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Aliases for TGFBR3 Gene

Aliases for TGFBR3 Gene

  • Transforming Growth Factor, Beta Receptor III 2 3
  • TGF-Beta Receptor Type III 3 4
  • TGF-Beta Receptor Type 3 3 4
  • Betaglycan Proteoglycan 2 3
  • Betaglycan 3 4
  • TGFR-3 3 4
  • Transforming Growth Factor, Beta Receptor III (Betaglycan, 300kDa) 2
  • Transforming Growth Factor Beta Receptor Type 3 3
  • Transforming Growth Factor Beta Receptor III 4
  • BGCAN 3

External Ids for TGFBR3 Gene

Previous GeneCards Identifiers for TGFBR3 Gene

  • GC01M092604
  • GC01M091345
  • GC01M091485
  • GC01M091860
  • GC01M092145
  • GC01M090263

Summaries for TGFBR3 Gene

Entrez Gene Summary for TGFBR3 Gene

  • This locus encodes the transforming growth factor (TGF)-beta type III receptor. The encoded receptor is a membrane proteoglycan that often functions as a co-receptor with other TGF-beta receptor superfamily members. Ectodomain shedding produces soluble TGFBR3, which may inhibit TGFB signaling. Decreased expression of this receptor has been observed in various cancers. Alternatively spliced transcript variants encoding different isoforms have been identified for this gene.[provided by RefSeq, Sep 2010]

GeneCards Summary for TGFBR3 Gene

TGFBR3 (Transforming Growth Factor, Beta Receptor III) is a Protein Coding gene. Diseases associated with TGFBR3 include familial cerebral saccular aneurysm and priapism. Among its related pathways are ERK Signaling and GPCR Pathway. GO annotations related to this gene include heparin binding and SMAD binding. An important paralog of this gene is TGFBR3L.

UniProtKB/Swiss-Prot for TGFBR3 Gene

  • Binds to TGF-beta. Could be involved in capturing and retaining TGF-beta for presentation to the signaling receptors

Gene Wiki entry for TGFBR3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TGFBR3 Gene

Genomics for TGFBR3 Gene

Regulatory Elements for TGFBR3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TGFBR3 Gene

Start:
91,680,343 bp from pter
End:
91,906,335 bp from pter
Size:
225,993 bases
Orientation:
Minus strand

Genomic View for TGFBR3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TGFBR3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGFBR3 Gene

Proteins for TGFBR3 Gene

  • Protein details for TGFBR3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q03167-TGBR3_HUMAN
    Recommended name:
    Transforming growth factor beta receptor type 3
    Protein Accession:
    Q03167
    Secondary Accessions:
    • A0AUW8
    • A8K5N0
    • B9EG88
    • Q5T2T4
    • Q5U731
    • Q9UGI2

    Protein attributes for TGFBR3 Gene

    Size:
    851 amino acids
    Molecular mass:
    93499 Da
    Quaternary structure:
    • Interacts with TCTEX1D4.
    SequenceCaution:
    • Sequence=AAA67061.1; Type=Frameshift; Positions=70, 73, 349, 350; Evidence={ECO:0000305};

    Alternative splice isoforms for TGFBR3 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TGFBR3 Gene

Proteomics data for TGFBR3 Gene at MOPED

Post-translational modifications for TGFBR3 Gene

  • Extensively modified by glycosaminoglycan groups (GAG)
  • Glycosylation at Asn141, Thr369, Asn492, Ser534, Ser545, Asn571, Asn590, and Asn697
  • Modification sites at PhosphoSitePlus

Antibody Products

  • R&D Systems Antibodies for TGFBR3 (TGF-beta RIII)
  • Cell Signaling Technology (CST) Antibodies for TGFBR3 (TGFBR3)

No data available for DME Specific Peptides for TGFBR3 Gene

Domains for TGFBR3 Gene

Protein Domains for TGFBR3 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TGFBR3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q03167

UniProtKB/Swiss-Prot:

TGBR3_HUMAN :
  • Q03167
Domain:
  • Contains 1 ZP domain.
genes like me logo Genes that share domains with TGFBR3: view

Function for TGFBR3 Gene

Molecular function for TGFBR3 Gene

GENATLAS Biochemistry: transforming growth factor beta,receptor type III
UniProtKB/Swiss-Prot Function: Binds to TGF-beta. Could be involved in capturing and retaining TGF-beta for presentation to the signaling receptors

Gene Ontology (GO) - Molecular Function for TGFBR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005024 transforming growth factor beta-activated receptor activity IDA 12958365
GO:0005114 type II transforming growth factor beta receptor binding IDA 11157754
GO:0005160 transforming growth factor beta receptor binding ISS 1333192
GO:0005515 contributes_to protein binding IPI 10746731
GO:0005539 glycosaminoglycan binding TAS 1333192
genes like me logo Genes that share ontologies with TGFBR3: view
genes like me logo Genes that share phenotypes with TGFBR3: view

Animal Models for TGFBR3 Gene

MGI Knock Outs for TGFBR3:

Animal Model Products

CRISPR Products

miRNA for TGFBR3 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TGFBR3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for TGFBR3 Gene

Localization for TGFBR3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TGFBR3 Gene

Secreted. Secreted, extracellular space. Cell membrane; Single-pass type I membrane protein. Note=Exists both as a membrane-bound form and as soluble form in serum and in the extracellular matrix.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TGFBR3 Gene COMPARTMENTS Subcellular localization image for TGFBR3 gene
Compartment Confidence
extracellular 5
plasma membrane 5
cytosol 2
endoplasmic reticulum 2
golgi apparatus 1
lysosome 1

Gene Ontology (GO) - Cellular Components for TGFBR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005578 proteinaceous extracellular matrix IEA --
GO:0005615 extracellular space TAS 18184661
GO:0005737 cytoplasm --
GO:0005783 endoplasmic reticulum IEA --
GO:0005887 integral component of plasma membrane ISS --
genes like me logo Genes that share ontologies with TGFBR3: view

Pathways for TGFBR3 Gene

genes like me logo Genes that share pathways with TGFBR3: view

PCR Array Products

Gene Ontology (GO) - Biological Process for TGFBR3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001568 blood vessel development IEA --
GO:0001666 response to hypoxia IEA --
GO:0001701 in utero embryonic development --
GO:0001824 blastocyst development IEA --
GO:0001837 epithelial to mesenchymal transition IDA 18184661
genes like me logo Genes that share ontologies with TGFBR3: view

Compounds for TGFBR3 Gene

(3) Novoseek inferred chemical compound relationships for TGFBR3 Gene

Compound -log(P) Hits PubMed IDs
glycosaminoglycan 37.3 1
threonine 28.6 1
tyrosine 0 2

(1) PharmGKB related drug/compound annotations for TGFBR3 Gene

Drug/compound Annotation
antidepressants CA
genes like me logo Genes that share compounds with TGFBR3: view

Transcripts for TGFBR3 Gene

Unigene Clusters for TGFBR3 Gene

Transforming growth factor, beta receptor III:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TGFBR3

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TGFBR3

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TGFBR3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: - -
SP2: - -
SP3: -
SP4: -
SP5:

Relevant External Links for TGFBR3 Gene

GeneLoc Exon Structure for
TGFBR3
ECgene alternative splicing isoforms for
TGFBR3

Expression for TGFBR3 Gene

mRNA expression in normal human tissues for TGFBR3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TGFBR3 Gene

SOURCE GeneReport for Unigene cluster for TGFBR3 Gene Hs.482390

genes like me logo Genes that share expressions with TGFBR3: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TGFBR3 Gene

Orthologs for TGFBR3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TGFBR3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TGFBR3 35
  • 99.26 (n)
  • 99.29 (a)
TGFBR3 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TGFBR3 35
  • 88.5 (n)
  • 87.75 (a)
TGFBR3 36
  • 87 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TGFBR3 35
  • 89.8 (n)
  • 89.76 (a)
TGFBR3 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tgfbr3 35
  • 84.2 (n)
  • 82.15 (a)
Tgfbr3 16
Tgfbr3 36
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TGFBR3 36
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 59 (a)
OneToMany
-- 36
  • 73 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tgfbr3 35
  • 83.67 (n)
  • 82.29 (a)
chicken
(Gallus gallus)
Aves TGFBR3 35
  • 70.01 (n)
  • 69.08 (a)
TGFBR3 36
  • 67 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TGFBR3 36
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tgfbr3 35
  • 63.5 (n)
  • 60.77 (a)
zebrafish
(Danio rerio)
Actinopterygii tgfbr3 35
  • 57.21 (n)
  • 51.09 (a)
tgfbr3 36
  • 49 (a)
OneToOne
Species with no ortholog for TGFBR3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TGFBR3 Gene

ENSEMBL:
Gene Tree for TGFBR3 (if available)
TreeFam:
Gene Tree for TGFBR3 (if available)

Paralogs for TGFBR3 Gene

Paralogs for TGFBR3 Gene

genes like me logo Genes that share paralogs with TGFBR3: view

Variants for TGFBR3 Gene

Sequence variations from dbSNP and Humsavar for TGFBR3 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs902 -- 91,682,670(-) AAACT(C/G)TAGCA utr-variant-3-prime, nc-transcript-variant
rs990 -- 91,682,679(-) ATAAA(A/C/G)ACCAA utr-variant-3-prime, nc-transcript-variant
rs205710 -- 91,796,852(-) gtagt(C/T)ccagc intron-variant
rs284138 -- 91,797,015(-) tgatg(G/T)tgcac intron-variant
rs284139 -- 91,796,785(-) GAGCC(A/G)TGATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TGFBR3 Gene

Variant ID Type Subtype PubMed ID
esv2714684 CNV Deletion 23290073
nsv528991 CNV Loss 19592680
nsv462517 CNV Gain 19166990
nsv524845 CNV Gain 19592680
esv988308 CNV Deletion 20482838
esv2714795 CNV Deletion 23290073
esv2661714 CNV Deletion 23128226
esv989733 CNV Deletion 20482838
esv25877 CNV Loss 19812545
nsv823520 CNV Loss 20364138
nsv525320 CNV Loss 19592680
nsv519291 CNV Loss 19592680
nsv830581 CNV Loss 17160897
dgv264n71 CNV Gain 21882294
esv2750842 CNV Gain 17911159

Relevant External Links for TGFBR3 Gene

HapMap Linkage Disequilibrium report
TGFBR3
Human Gene Mutation Database (HGMD)
TGFBR3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TGFBR3 Gene

Disorders for TGFBR3 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for TGFBR3 Gene including...

Search for TGFBR3 Gene in MalaCards »

(4) Novoseek inferred disease relationships for TGFBR3 Gene

Disease -log(P) Hits PubMed IDs
breast cancer 11.4 4
tumors 7.26 1
cancer 1.83 2
metastasis 0.398 2

Relevant External Links for TGFBR3

Genetic Association Database (GAD)
TGFBR3
Human Genome Epidemiology (HuGE) Navigator
TGFBR3
genes like me logo Genes that share disorders with TGFBR3: view

No data available for UniProtKB/Swiss-Prot for TGFBR3 Gene

Publications for TGFBR3 Gene

  1. Molecular cloning and characterization of the human and porcine transforming growth factor-beta type III receptors. (PMID: 1333192) Moren A. … Miyazono K. (Biochem. Biophys. Res. Commun. 1992) 2 3 4 23
  2. Eleven single nucleotide polymorphisms and one triple nucleotide insertion of the human TGF-beta III receptor gene. (PMID: 10944857) Zippert R. … Schunkert H. (J. Hum. Genet. 2000) 3 4 23
  3. Mutational analysis of the betaglycan gene-coding region in susceptibility for ovarian failure. (PMID: 16613887) Dixit H. … Singh L. (Hum. Reprod. 2006) 3 23 48
  4. Transforming growth factor-beta receptor-3 is associated with pulmonary emphysema. (PMID: 19131638) Hersh C.P. … Silverman E.K. (Am. J. Respir. Cell Mol. Biol. 2009) 3 23 48
  5. Down-regulation of transforming growth factor beta receptor type III in hepatocellular carcinoma is not directly associated with genetic alterations or loss of heterozygosity. (PMID: 19639191) Bae H.J. … Nam S.W. (Oncol. Rep. 2009) 3 23

Products for TGFBR3 Gene

Sources for TGFBR3 Gene

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