TGFBR1 Gene
protein-coding GIFtS : 74
GCID: GC09 P101867
transforming growth factor, beta receptor 1 (Previous names: transforming growth factor, beta receptor I (activin A... )
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Aliasesfor TGFBR1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Transforming Growth Factor, Beta Receptor 1 1 2 EC 2.7.11.303 8 ALK-51 2 3 AAT52 5 ALK52 3 5 LDS1A2 5 ACVRLK41 2 LDS2A2 5 Transforming Growth Factor, Beta Receptor I (Activin A Receptor Type II-LikeKinase, 53kD)1 2 MSSE2 Activin A Receptor Type II-Like Protein Kinase Of 53kD2 3 Activin A Receptor Type II-Like Kinase, 53kD2 Activin Receptor-Like Kinase 52 3 Activin A Receptor Type II-Like Kinase, 53kDa2 Serine/Threonine-Protein Kinase Receptor R42 3 TbetaR-I3 Transforming Growth Factor-Beta Receptor Type I2 3 TGF-Beta Receptor Type-12 SKR42 3 Transforming Growth Factor Beta Receptor I2 TGFR-12 3 TbetaR-I3 TGF-Beta Receptor Type I2 3 EC 2.7.118 TGF-Beta Type I Receptor2 3
Export aliases for TGFBR1 gene to outside databases Previous GC identifers: GC09P092667 GC09P093610 GC09P095324 GC09P097247 GC09P098946 GC09P100907 GC09P071464
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Summariesfor TGFBR1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TGFBR1 : The protein encoded by this gene forms a heteromeric complex with type II TGF-beta receptors when bound to TGF-beta, transducing the TGF-beta signal from the cell surface to the cytoplasm. The encoded protein is a serine/threonine protein kinase. Mutations in this gene have been associated with Loeys-Dietz aortic aneurysm syndrome (LDAS). Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Aug 2008) UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897 Function : Transmembrane serine/threonine kinase forming with the TGF-beta type II serine/threonine kinase receptor,TGFBR2, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinogenesis. The formation of the receptor complex composed of 2 TGFBR1 and 2 TGFBR2 molecules symmetrically bound to the cytokine dimer results in the phosphorylation and the activation of TGFBR1 by the constitutively active TGFBR2. Activated TGFBR1 phosphorylates SMAD2 which dissociates from the receptor and interacts with SMAD4. The SMAD2-SMAD4 complex is subsequently translocated to the nucleus where it modulates the transcription of the TGF-beta-regulated genes. This constitutes the canonical SMAD-dependent TGF-beta signaling cascade. Also involved in non-canonical, SMAD-independent TGF-beta signaling pathways. For instance, TGFBR1 induces TRAF6 autoubiquitination which in turn results in MAP3K7 ubiquitination and activation to trigger apoptosis. Also regulates epithelial to mesenchymal transition through a SMAD-independent signaling pathway through PARD6A phosphorylation and activation summary
for TGFBR1 : The transforming growth factor-beta family of polypeptides (TGF-beta1, TGF-beta2 and TGF-beta3) are involvedin the regulation of cellular processes, including cell division, differentiation, motility, adhesion anddeath. TGF-beta signals by binding the TGF-beta type II receptor (TGF-betaRII) which transphosphorylates andactivates the type I receptor (TGF-betaRI). Activated TGF-betaRI then phosphorylates a subset of SMADproteins, Smad2 and Smad3, which translocate to the nucleus where they form transcription complexes with DNAbinding factors and co-activators/co-repressors. TGF-beta functions as a tumor suppressor by inhibiting thecell cycle in the G1 phase. Administration of TGF-beta is able to protect against mammary tumor developmentin transgenic mouse models in vivo. Disruption of the TGF-beta/SMAD pathway has been implicated in a varietyof human cancers, with the majority of colon and gastric cancers being caused by an inactivating mutation ofTGF-betaRII. Homozygous deletions of TGF-betaRI and inactivating mutations of SMAD genes have also beenfound. A pro-oncogenic role for TGF-beta has also been proposed. Once cells lose their sensitivity toTGF-beta1-mediated growth inhibition, autocrine TGF-beta signaling can promote tumorigenesis. Elevatedlevels of TGF-beta1 are often observed in advanced carcinomas, and have been correlated with increased tumorinvasiveness and disease progression. Gene Wiki entry for TGFBR1 (TGF beta receptor 1)
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Genomic Viewsfor TGFBR1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000009.11 NC_018920.1 NT_008470.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TGFBR1 gene promoter: USF1 Pbx1a AP-1 ATF-2 USF2 USF-1:USF-2 HNF-3beta USF-1 c-Jun Other transcription factors Search SABiosciences Chromatin IP Primers for TGFBR1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TGFBR1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 9q22 Ensembl cytogenetic band: 9q22.33 HGNC cytogenetic band: 9q22 TGFBR1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 9 GeneLoc Exon Structure
GeneLoc location for GC09P101867: view genomic region
(about GC identifiers )
Start:
101,866,320 bp from pter
End:
101,916,474 bp from pter
Size:
50,155 bases
Orientation:
plus strand
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Proteinsfor TGFBR1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897 (See
protein sequence )Recommended Name: TGF-beta receptor type-1 precursor Size : 503 amino acids; 55960 Da
Cofactor : Magnesium or manganese (By similarity)
Subunit : Homodimer; in the endoplasmic reticulum but also at the cell membrane. Heterohexamer; TGFB1, TGFB2 and TGFB3homodimeric ligands assemble a functional receptor composed of two TGFBR1 and TGFBR2 heterodimers to form a ligand-receptor heterohexamer. The respective affinity of TGBRB1 and TGFBR2 for the ligands may modulate the kinetics of assembly of the receptor and may explain the different biological activities of TGFB1, TGFB2 and TGFB3. Interacts with CD109; inhibits TGF-beta receptor activation in keratinocytes. Interacts with RBPMS. Interacts (unphosphorylated) with FKBP1A; prevents TGFBR1 phosphorylation by TGFBR2 and stabilizes it in the inactive conformation. Interacts with SMAD2, SMAD3 and ZFYVE9; ZFYVE9 recruits SMAD2 and SMAD3 to the TGF-beta receptor. Interacts with TRAF6 and MAP3K7; induces MAP3K7 activation by TRAF6. Interacts with PARD6A; involved in TGF-beta induced epithelial to mesenchymal transition. Interacts with SMAD7, NEDD4L, SMURF1 and SMURF2; SMAD7 recruits NEDD4L, SMURF1 and SMURF2 to the TGF-beta receptor. Interacts with USP15 and VPS39
Subcellular location : Cell membrane; Single-pass type I membrane protein. Cell junction, tight junction
6/17 PDB 3D structures from and Proteopedia for TGFBR1 (see all 17 ):1B6C (3D)
  1IAS (3D)
  1PY5 (3D)
  1RW8 (3D)
  1TBI (3D)
  1VJY (3D)
 
Secondary accessions : Q6IR47 Q706C0 Q706C1Alternative splicing : 3 isoforms : P36897-1 P36897-2 P36897-3 Explore the universe of human proteins at neXtProt for TGFBR1: NX_P36897 Post-translational modifications:
Phosphorylated at basal levels in the absence of ligand. Activated upon phosphorylation by TGFBR2, mainly in the GS domain. Phosphorylation in the GS domain abbrogates FKBP1A-binding1
N-Glycosylated1
Ubiquitinated; undergoes ubiquitination catalyzed by several E3 ubiquitin ligases including SMURF1, SMURF2 and NEDD4L2. Results in the proteasomal and/or lysosomal degradation of the receptor thereby negatively regulating its activity. Deubiquitinated by USP15, leading to stabilization of the protein and enhanced TGF-beta signal1
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_P36897 4/23 DME Specific Peptides for TGFBR1 (P36897 ) (see all 23 )TGFBR1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (2 alternative transcripts):
NP_001124388.1 NP_004603.1 ENSEMBL proteins: ENSP00000449934 ENSP00000447182 ENSP00000364133 ENSP00000364129 ENSP00000446685 ENSP00000447297 ENSP00000449028 ENSP00000448518 ENSP00000450052 ENSP00000447707 Reactome Protein details: P36897 Human Recombinant Protein Products: Gene Ontology (GO): 5/9 cellular component terms (GO ID links to tree view) (see all 9 ): About this table
TGFBR1 for ontologies About GeneDecksing TGFBR1 Antibody Products: Assay Products for TGFBR1:
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Protein
Domains / Familiesfor TGFBR1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TGFBR1 for domains About GeneDecksing 5/6 InterPro domains/families (see all 6 ):
Graphical View of Domain Structure for InterPro Entry P36897 ProtoNet protein and cluster: P36897
1 Blocks protein family : IPB000472 Domain in TGF-beta receptor/activin receptor UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897 Similarity : Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamilySimilarity : Contains 1 GS domainSimilarity : Contains 1 protein kinase domain
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Functionfor TGFBR1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897 Function : Transmembrane serine/threonine kinase forming with the TGF-beta type II serine/threonine kinase receptor,TGFBR2, the non-promiscuous receptor for the TGF-beta cytokines TGFB1, TGFB2 and TGFB3. Transduces the TGFB1, TGFB2 and TGFB3 signal from the cell surface to the cytoplasm and is thus regulating a plethora of physiological and pathological processes including cell cycle arrest in epithelial and hematopoietic cells, control of mesenchymal cell proliferation and differentiation, wound healing, extracellular matrix production, immunosuppression and carcinogenesis. The formation of the receptor complex composed of 2 TGFBR1 and 2 TGFBR2 molecules symmetrically bound to the cytokine dimer results in the phosphorylation and the activation of TGFBR1 by the constitutively active TGFBR2. Activated TGFBR1 phosphorylates SMAD2 which dissociates from the receptor and interacts with SMAD4. The SMAD2-SMAD4 complex is subsequently translocated to the nucleus where it modulates the transcription of the TGF-beta-regulated genes. This constitutes the canonical SMAD-dependent TGF-beta signaling cascade. Also involved in non-canonical, SMAD-independent TGF-beta signaling pathways. For instance, TGFBR1 induces TRAF6 autoubiquitination which in turn results in MAP3K7 ubiquitination and activation to trigger apoptosis. Also regulates epithelial to mesenchymal transition through a SMAD-independent signaling pathway through PARD6A phosphorylation and activation Catalytic activity : ATP + [receptor-protein] = ADP + [receptor-protein] phosphateEnzyme regulation : Kept in an inactive conformation by FKBP1A preventing receptor activation in absence of ligand.CD109 is another inhibitor of the receptor
Genatlas biochemistry entry for TGFBR1 : transforming growth factor beta,receptor type I,regulating cell cycle progression,including two variants TGFBR1,6A and TGFBR1,10A,inactivated in pancreatic and biliary cancers,deleted in cutaneous T cell lymphoma Enzyme Numbers (IUBMB): EC 2.7.11.30 1 2 EC 2.7.11 2 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TGFBR1 (NM_001130916 ) Sino Biological Human cDNA Clone for TGFBR1 DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TGFBR1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TGFBR1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TGFBR1
Gene Ontology (GO): 5/15 molecular function terms (GO ID links to tree view) (see all 15 ): About this table
TGFBR1 for ontologies About GeneDecksing 5 GenomeRNAi human phenotypes for TGFBR1 :Animal Models: Mouse knock-outs for TGFBR1: Tgfbr1 tm1Bopa Tgfbr1 tm1Karl 15 MGI mutant phenotypes (inferred from 7 alleles ) (MGI details for Tgfbr1) :
TGFBR1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor TGFBR1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways  - 5/56 super-pathways (see all 56 ) About this table See pathways by source Super-pathway contained gene-specific pathways 1 Apoptotic Pathways in Synovial Fibroblasts 2 Development_CNTF receptor signaling 3 Apoptosis Pathway 4 PAK Pathway 5 Transcription_Role of VDR in regulation of genes involved in osteoporosis
Pathway sources See GeneCards unified pathways Show all pathways 5/8 EMD Millipore Pathways for TGFBR1 (see all 8 )4 R&D Systems Pathways for TGFBR1 5/42 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for TGFBR1 (see all 42 )2
Cell Signaling Technology (CST) Pathways for TGFBR1 4 Tocris Bioscience Pathways for TGFBR1 5/9 GeneGo (Thomson Reuters) Pathways for TGFBR1 (see all 9 )5/10 BioSystems Pathways for TGFBR1 (see all 10 ) 5/7
Reactome Pathways for TGFBR1 (see all 7 )5/11
Kegg Pathways (Kegg details for TGFBR1) (see all 11 ):
TGFBR1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for TGFBR1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)5/332 Interacting proteins for TGFBR1 (P36897 1 , 2 , 3 ENSP00000364133 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 332 )Interactant Interaction Details GeneCard External ID(s) TGFBR2 P37173 2 , 3 , ENSP00000351905 4 MINT-8182908 MINT-8183771 MINT-8182846 MINT-8182828 MINT-8182931 I2D:
score=6 STRING: ENSP00000351905 TGFB3 P10600 2 , 3 , ENSP00000238682 4 MINT-8182908 MINT-8183771 MINT-8182846 MINT-8182828 MINT-8182931 I2D:
score=3 STRING: ENSP00000238682 SMAD2 Q15796 2 , 3 , ENSP00000262160 4 MINT-6799216 I2D:
score=5 STRING: ENSP00000262160 TGFB1 P01137 1 , 3 , ENSP00000221930 4 EBI-1027557,EBI-779636 I2D:
score=3 STRING: ENSP00000221930 YWHAZ P63104 1 , 3 , ENSP00000309503 4 EBI-1027557,EBI-347088 I2D:
score=1 STRING: ENSP00000309503
About this table Gene Ontology (GO): 5/69 biological process terms (GO ID links to tree view) (see all 69 ): About this table
TGFBR1 for ontologies About GeneDecksing
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Drugs & Compoundsfor TGFBR1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TGFBR1 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for TGFBR1
Compounds for TGFBR1 available from Tocris Bioscience About this table Compound Action
CAS
# D 4476 Selective CK1 inhibitor. Also inhibits TGF-betaRI [301836-43-1] A 83-01 Selective inhibitor of TGF-betaRI, ALK4 and ALK7 [909910-43-6] SB 525334 Selective inhibitor of TGF-betaRI [356559-20-1] SD 208 Potent ATP-competitive TGF-betaRI inhibitor [627536-09-8] GW 788388 Selective inhibitor of TGF-betaRI [452342-67-5]
4 HMDB Compounds for TGFBR1 About this table 6 DrugBank Compounds for TGFBR1 About this table 10/26 Novoseek chemical compound relationships for TGFBR1 gene (see all 26 ) About this table
Compound
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tgf beta1
78.7
22
16762882 (4), 17071858 (2), 20169621 (1), 10208456 (1) (see all 16 )
threonine
65.3
13
10997691 (1), 8044838 (1), 8576253 (1), 12606401 (1) (see all 12 )
serine
54.2
15
10997691 (1), 17673906 (1), 8044838 (1), 8576253 (1) (see all 13 )
pyrazole
17
2
15317461 (1)
ribonucleic acid
12.2
2
8636304 (1), 10819793 (1)
matrigel
11.4
2
16407850 (1), 9139855 (1)
vegf
8.68
9
19506300 (5), 15797633 (4)
rapamycin
7.01
8
12417722 (1), 16362038 (1)
ly294002
4.78
1
14610066 (1)
nitric oxide
4.16
1
12027535 (1)
Search CenterWatch for drugs/clinical trials and news about TGFBR1 / TGFR1
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Transcriptsfor TGFBR1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TGFBR1 gene (2 alternative transcripts): NM_001130916.1 NM_004612.2 Unigene Cluster for TGFBR1:
Transforming growth factor, beta receptor 1 Hs.494622 [show with all ESTs ] Unigene Representative Sequence: AJ619019 10 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000547314 ENST00000552573 ENST00000374994 (uc004azc.3 uc004azd.3 uc004aze.3 uc011lvc.2 )ENST00000374990 ENST00000549766 ENST00000552516 ENST00000549021 ENST00000548365 ENST00000550253 ENST00000546584 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 (see all 4 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): TGFBR1 (NM_001130916 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TGFBR1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TGFBR1
Additional cDNA sequence: AJ420419.1 AJ619019.2 AJ619020.1 AK002171.1 AK129793.1 AK302059.1 AK302234.1 AL117597.1 BC038347.1 BC056247.1 BC071181.1 BX648917.1 L11695.1
14 DOTS entries : DT.99954952 DT.91865585
DT.444189 DT.86853546 DT.121169149 DT.100790430 DT.121169150 DT.435429 DT.101977267 DT.121169110 DT.95256903 DT.75182985 DT.92463787 DT.95275649 24/228 AceView cDNA sequences (see all 228 ):
CB143622 CF242945 BC056247 AA191512 BM472996 BC071181 AA548169 BQ434440 AA256814 NM_004612 N52775 BQ004098 AW339527 AU140082 Z41211 BF725757 AA565660 AU156571 AA652779 BP369056 AI627324 BG539642 AI017162 BF433822 GeneLoc Exon Structure 5/9 Alternative Splicing Database (ASD) splice patterns (SP) for TGFBR1 (see all 9 ) About this scheme ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b · 3c ^ 4a · 4b ^ 5a · 5b · 5c · 5d ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10 ^ 11a · 11b · 11c SP1 :         -   -   -   -     -                             SP2 :         -   -   -   -     -   -   -   -                       SP3 :                                     -           SP4 :     -   -   -   -   -   -     -                             SP5 :     -   -   -   -   -   -                                
ECgene alternative splicing isoforms for TGFBR1
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Expression for TGFBR1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TGFBR1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image TGFBR1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TGFBR1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TGFBR1 SOURCE GeneReport for Unigene cluster: Hs.494622 UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897 Tissue specificity : Found in all tissues examined, most abundant in placenta and least abundant in brain and heart SABiosciences Expression via Pathway-Focused PCR Arrays including TGFBR1 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TGFBR1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat TGFBR1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TGFBR1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TGFBR1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TGFBR1
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Orthologsfor TGFBR1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for TGFBR1 gene from 6/23 species (see all 23 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
TGFBR11
transforming growth factor, beta receptor I (activin more
82.11(n) 92.86(a)
 
374094 NM_204246.1 NP_989577.1
lizard (Anolis carolinensis)
Reptilia
TGFBR16
--
88(a)
1 ↔ 1
6(55823060-55835728)
African clawed frog (Xenopus laevis)
Amphibia
Xl.9962
Xenopus laevis type I serine/threonine kinase receptor more
73.99(n)
 
U21860.1
zebrafish (Danio rerio)
Actinopterygii
tgfbr1b1
transforming growth factor, beta receptor 1 b
69.44(n) 85.26(a)
 
792928 NM_001115059.1 NP_001108531.1
fruit fly (Drosophila melanogaster)
Insecta
babo1 , 3
TGFbeta ligand binding to type I receptor protein more 3 baboon1
58(a) (best of 3)3 58.03(n) 1 59.74(a) 1
 
44F123 35900 1 NM_057652.3 1 NP_477000.1 1
worm (Caenorhabditis elegans)
Secernentea
daf-13
protein kinase
42(a) (best of 2)
 
IV(132451-137621) --
ENSEMBL Gene Tree for TGFBR1 (if available)TreeFam Gene Tree for TGFBR1 (if available)
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Paralogsfor TGFBR1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TGFBR1 gene TGFBR2 2 ACVR1C 2 AMHR2 2 ACVR2A 2 ACVR2B 2 ACVR1B 2 BMPR1A 2 ACVR1 2 BMPR2 2 ACVRL1 2 BMPR1B 2 11 SIMAP similar genes for TGFBR1 using alignment to 11 protein entries: TGFR1_HUMAN (see all proteins ):ACVR1B ACVR1C ACVRL1 BMPR1B BMPR1A ACVR1 ACVR2A ACVR2B TGFBR2 BMPR2 ZAK
TGFBR1 for paralogs About GeneDecksing 1 Pseudogenes.org Pseudogene for TGFBR1 PGOHUM00000261258
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Genomic Variantsfor TGFBR1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 9 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TGFBR1 (101866320 - 101916474 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for TGFBR1: -- Human Gene Mutation Database (HGMD) : TGFBR1 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TGFBR1
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Disorders
/ Diseasesfor TGFBR1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TGFBR1 for disorders About GeneDecksing OMIM gene information: 190181 OMIM disorders : 609192 608967 UniProtKB/Swiss-Prot: TGFR1_HUMAN, P36897
Defects in TGFBR1 are the cause of Loeys-Dietz syndrome type 1A (LDS1A) [MIM:609192]; also known as Furlong syndrome or Loeys-Dietz aortic aneurysm syndrome (LDAS). LDS1 is an aortic aneurysm syndrome with widespread systemic involvement. The disorder is characterized by arterial tortuosity and aneurysms, craniosynostosis, hypertelorism, and bifid uvula or cleft palate. Other findings include exotropy, micrognathia and retrognathia, structural brain abnormalities, intellectual deficit, congenital heart disease, translucent skin, joint hyperlaxity and aneurysm with dissection throughout the arterial tree Defects in TGFBR1 are the cause of Loeys-Dietz syndrome type 2A (LDS2A) [MIM:608967]. An aortic aneurysm syndrome with widespread systemic involvement. Physical findings include prominent joint laxity, easy bruising, wide and atrophic scars, velvety and translucent skin with easily visible veins, spontaneous rupture of the spleen or bowel, diffuse arterial aneurysms and dissections, and catastrophic complications of pregnancy, including rupture of the gravid uterus and the arteries, either during pregnancy or in the immediate postpartum period. LDS2 is characterized by the absence of craniofacial abnormalities with the exception of bifid uvula that can be present in some patients. Note=TGFBR1 mutation Gln-487 has been reported to be associated with thoracic aortic aneurysms and dissection (TAAD) (PubMed:16791849). This phenotype, also known as thoracic aortic aneurysms type 5 (AAT5), is distinguised from LDS2A by having aneurysms restricted to thoracic aorta. It is unclear, however, if this condition is fulfilled in individuals bearing Gln-487 mutation, that is why they are considered as LDS2A by the OMIM resource Defects in TGFBR1 are the cause of multiple self-healing squamous epithelioma (MSSE) [MIM:132800]. A disorder characterized by multiple skin tumors that undergo spontaneous regression. Tumors appear most often on sun-exposed regions, are locally invasive, and undergo spontaneous resolution over a period of months leaving pitted scars 20/120 diseases for TGFBR1 (see all 120 ): About MalaCards aortic aneurysm loeys-dietz syndrome loeys-dietz syndrome type 1a loeys-dietz syndrome type 2a multiple self healing squamous epithelioma marfan-like connective tissue disorder thoracic aortic aneurysm camurati-engelmann disease gastric cancer estrogen-receptor negative breast cancer familial thoracic aortic aneurysm and dissection carcinoma cleft lip/palate arteriovenous malformation patent ductus arteriosus lichen planus craniofacial abnormalities oral lichen planus abdominal aortic aneurysm hereditary hemorrhagic telangiectasia 3 diseases from the University of Copenhagen DISEASES database for TGFBR1 :Loeys-Dietz syndrome Cleft palate Aortic aneurysm 10/56 Novoseek disease relationships for TGFBR1 gene (see all 56 ) About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
marfan syndrome
57.3
12
16799921 (2), 18377530 (1), 16596670 (1), 16835936 (1) (see all 8 )
telangiectasia hereditary hemorrhagic
57.1
1
12384983 (1)
sclerosis systemic
43.5
4
15593186 (1), 16575856 (1), 16947635 (1)
tumors
36.4
21
7622234 (2), 10932976 (2), 8636304 (1), 8760600 (1) (see all 15 )
renal fibrosis
35.1
1
17274978 (1)
breast cancer
33.9
15
16428477 (2), 10416594 (2), 14760070 (1), 11221885 (1) (see all 11 )
telangiectasia
31.4
1
15385967 (1)
cancer
25.9
18
8760600 (2), 10416594 (2), 19509225 (2), 11746979 (1) (see all 11 )
hnscc
25.1
2
20111589 (1), 16478646 (1)
keloid
21.2
1
11496185 (1)
GeneTests: TGFBR1 Thoracic Aortic Aneurysms and Aortic Dissections Loeys-Dietz Syndrome Genetic Association Database (GAD): TGFBR1 Human Genome Epidemiology (HuGE) Navigator: TGFBR1 (76 documents) Export disorders for TGFBR1 gene to outside databases
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Publicationsfor TGFBR1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TGFBR1 gene, integrated from 9 sources (see all 657 ): (articles sorted by number of sources associating them with TGFBR1) Utopia : connect your pdf to the dynamic world of online information
TGFBR1(*)6A is not associated with prostate cancer in men of European ancestry. (PubMed id 15505640) 1 , 2 , 4 Suarez B.K.... Catalona W.J. (2005) No major association between TGFBR1*6A and prostate cancer. (PubMed id 15385056) 1 , 2 , 4 Kaklamani V.G.... Pasche B. (2004) TGFBR1*6A and cancer risk: a meta-analysis of seven case-control studies. (PubMed id 12947057) 1 , 2 , 4 Kaklamani V.G.... Pasche B. (2003) Identification and in silico analyses of novel TGFBR1 and TGFBR2 mutations in Marfan syndrome-related disorders. (PubMed id 16791849) 1 , 2 , 9 Matyas G.... Steinmann B. (2006) An intronic variant of the TGFBR1 gene is associated with carcinomas of the kidney and bladder. (PubMed id 15382067) 1 , 4, 9 Chen T....Carter J.H. (2004) Identification of 1,5-naphthyridine derivatives as a novel series of potent and selective TGF-beta type I receptor inhibitors. (PubMed id 15317461) 1 , 2 , 9 Gellibert F....Hartley D. (2004) FBN1, TGFBR1, and the Marfan-craniosynostosis/mental retardation disorders revisited. (PubMed id 16596670) 1 , 2 , 9 Ades L.C.... Bennetts B. (2006) Loeys-Dietz syndrome type I and type II: clinical fin dings and novel mutations in two Italian patients. (PubMed id 19883511) 1 , 2 , 9 Drera B....Colombi M. (2009) Smurf1 interacts with transforming growth factor-beta type I receptor through Smad7 and induces receptor degradation. (PubMed id 11278251) 1 , 2 , 9 Ebisawa T....Miyazono K. (2001) Cloning and genomic organization of the human transforming growth factor-beta type I receptor gene. (PubMed id 9417915) 1 , 2 , 9 Vellucci V.F. and Reiss M. (1997)
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External Searches for TGFBR1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TGFBR1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing TGFBR1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing TGFBR1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TGFBR1 Pharmacogenomics, SNPs, Pathways ATLAS Chromosomes in Cancer entry for TGFBR1 Genetics and Cytogenetics in Oncology and Haematology GeneReviews http://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/TGFBR1 NIEHS-SNPs http://egp.gs.washington.edu/data/tgfbr1/
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About This Section Patent Information for TGFBR1 gene: Search GeneIP for patents involving TGFBR1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TGFBR1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TGFBR1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TGFBR1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TGFBR1 OriGene Protein Over-expression Lysate for TGFBR1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TGFBR1 OriGene 3'-UTR Clone for TGFBR1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TGFBR1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for TGFBR1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TGFBR1 OriGene Custom Protein Services for TGFBR1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TGFBR1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TGFBR1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TGFBR1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TGFBR1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TGFBR1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TGFBR1
Antibodies & Assays for TGFBR1  
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TGFBR1
ThermoFisher Antibodies for TGFBR1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TGFBR1
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