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Aliases for TGFA-IT1 Gene

Subcategory (RNA class) for TGFA-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TGFA-IT1 Gene

  • TGFA Intronic Transcript 1 2 3 5
  • TGFA Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TGFA-IT1 Gene

Previous GeneCards Identifiers for TGFA-IT1 Gene

  • GC00U933038
  • GC02M070695

Summaries for TGFA-IT1 Gene

GeneCards Summary for TGFA-IT1 Gene

TGFA-IT1 (TGFA Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TGFA-IT1 Gene

Genomics for TGFA-IT1 Gene

Regulatory Elements for TGFA-IT1 Gene

Enhancers for TGFA-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F070509 1.2 FANTOM5 Ensembl ENCODE 0.3 -28.5 -28533 1.5 CTCF GATA3 ZNF146 KLF9 KLF4 ZBTB20 TCF7L2 CD207 TGFA ASPRV1 FIGLA TGFA-IT1
GH02F070513 1.2 Ensembl ENCODE 0.3 -33.9 -33931 4.1 HDGF HDAC1 CBX3 PKNOX1 ARNT CREB3L1 RAD21 GATA2 SCRT2 FOS TGFA ASPRV1 TGFA-IT1
GH02F070480 0.4 Ensembl 0.8 +1.4 1440 0.4 ATF3 CEBPB TGFA TGFA-IT1 GC02M070401
GH02F070470 0.8 Ensembl 0.4 +8.5 8540 5.8 KLF17 MAX YBX1 FEZF1 PLRG1 ZIC2 ZNF366 POLR2A PATZ1 PRDM10 TGFA MPHOSPH10 TGFA-IT1 GC02M070401
GH02F070522 1.3 Ensembl ENCODE 0.2 -43.2 -43167 4.0 PKNOX1 ARNT SIN3A FOS ZNF263 SP3 REST PPARG MEF2D MAFF TGFA ADD2 ASPRV1 TGFA-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TGFA-IT1 Gene

Chromosome:
2
Start:
70,467,385 bp from pter
End:
70,481,640 bp from pter
Size:
14,256 bases
Orientation:
Minus strand

Genomic View for TGFA-IT1 Gene

Genes around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TGFA-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TGFA-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGFA-IT1 Gene

Proteins for TGFA-IT1 Gene

Post-translational modifications for TGFA-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TGFA-IT1 Gene

Domains & Families for TGFA-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TGFA-IT1 Gene

Function for TGFA-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TGFA-IT1 Gene

Localization for TGFA-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TGFA-IT1 Gene

Pathways & Interactions for TGFA-IT1 Gene

SuperPathways for TGFA-IT1 Gene

No Data Available

Interacting Proteins for TGFA-IT1 Gene

Gene Ontology (GO) - Biological Process for TGFA-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TGFA-IT1 Gene

Transcripts for TGFA-IT1 Gene

mRNA/cDNA for TGFA-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TGFA-IT1 Gene

No ASD Table

Relevant External Links for TGFA-IT1 Gene

GeneLoc Exon Structure for
TGFA-IT1
ECgene alternative splicing isoforms for
TGFA-IT1

Expression for TGFA-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TGFA-IT1 Gene

genes like me logo Genes that share expression patterns with TGFA-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TGFA-IT1 Gene

Orthologs for TGFA-IT1 Gene

Evolution for TGFA-IT1 Gene

ENSEMBL:
Gene Tree for TGFA-IT1 (if available)
TreeFam:
Gene Tree for TGFA-IT1 (if available)

No data available for Orthologs for TGFA-IT1 Gene

Paralogs for TGFA-IT1 Gene

No data available for Paralogs for TGFA-IT1 Gene

Variants for TGFA-IT1 Gene

Sequence variations from dbSNP and Humsavar for TGFA-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10173132 -- 70,481,707(+) aactt(C/T)tgcct intron-variant, upstream-variant-2KB
rs10179737 -- 70,483,632(+) TTCTA(C/T)CTGCC intron-variant, upstream-variant-2KB
rs111321692 -- 70,472,375(+) TTCCT(A/G)TTGCC intron-variant
rs111327660 -- 70,469,027(+) GTTCA(A/G/T)AAAGG intron-variant
rs111643057 -- 70,480,068(+) GCTAG(A/C)TAAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TGFA-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv834255 CNV gain 17160897

Relevant External Links for TGFA-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TGFA-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TGFA-IT1 Gene

Disorders for TGFA-IT1 Gene

Relevant External Links for TGFA-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TGFA-IT1

No disorders were found for TGFA-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TGFA-IT1 Gene

Publications for TGFA-IT1 Gene

  1. Common variants at 1p36 are associated with superior frontal gyrus volume. (PMID: 25335168) Hashimoto R. … Ozaki N. (Transl Psychiatry 2014) 3 64
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3 64

Products for TGFA-IT1 Gene

Sources for TGFA-IT1 Gene

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