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Aliases for TGFA-IT1 Gene

Subcategory (RNA class) for TGFA-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TGFA-IT1 Gene

  • TGFA Intronic Transcript 1 2 3 5
  • TGFA Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TGFA-IT1 Gene

Previous GeneCards Identifiers for TGFA-IT1 Gene

  • GC00U933038
  • GC02M070695

Summaries for TGFA-IT1 Gene

GeneCards Summary for TGFA-IT1 Gene

TGFA-IT1 (TGFA Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TGFA-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TGFA-IT1 Gene

Genomics for TGFA-IT1 Gene

Regulatory Elements for TGFA-IT1 Gene

Enhancers for TGFA-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02H070522 1.4 Ensembl ENCODE dbSUPER 0.3 -43.2 -43167 4 ELF3 TBP PKNOX1 FOXA2 SIN3A RAD21 DNMT3B RFX5 SCRT2 RCOR1 TGFA ADD2 ASPRV1 TGFA-IT1
GH02H070513 1.3 Ensembl ENCODE dbSUPER 0.3 -33.9 -33879 3 PKNOX1 ESRRA NFIB SIN3A MAX ZNF195 BATF ZIC2 RAD21 ZFHX2 TGFA ASPRV1 TGFA-IT1
GH02H070509 1.2 FANTOM5 ENCODE dbSUPER 0.3 -28.6 -28640 1 SMARCE1 CTCF GATA3 KLF9 KLF4 ZBTB20 TCF7L2 CD207 TGFA ASPRV1 FIGLA TGFA-IT1
GH02H070551 1.2 ENCODE dbSUPER 0.2 -71.7 -71716 4 ARID4B SIN3A DMAP1 ZBTB7B YY1 GLIS2 ZNF143 SP3 MXD4 REST CLEC4F TIA1 TEX261 PCBP1-AS1 CD207 VAX2 TGFA TGFA-IT1
GH02H070540 1.1 Ensembl ENCODE dbSUPER 0.2 -60.1 -60076 2 ZNF316 JUND RNF2 ZNF629 FOS ZNF600 PRDM10 PRDM1 SP7 ADD2 TGFA TGFA-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TGFA-IT1 Gene

Chromosome:
2
Start:
70,467,385 bp from pter
End:
70,481,640 bp from pter
Size:
14,256 bases
Orientation:
Minus strand

Genomic View for TGFA-IT1 Gene

Genes around TGFA-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TGFA-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TGFA-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TGFA-IT1 Gene

Proteins for TGFA-IT1 Gene

Post-translational modifications for TGFA-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TGFA-IT1 Gene

Domains & Families for TGFA-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TGFA-IT1 Gene

Function for TGFA-IT1 Gene

Phenotypes From GWAS Catalog for TGFA-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TGFA-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TGFA-IT1 Gene

Localization for TGFA-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TGFA-IT1 Gene

Pathways & Interactions for TGFA-IT1 Gene

SuperPathways for TGFA-IT1 Gene

No Data Available

Interacting Proteins for TGFA-IT1 Gene

Gene Ontology (GO) - Biological Process for TGFA-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TGFA-IT1 Gene

Drugs & Compounds for TGFA-IT1 Gene

No Compound Related Data Available

Transcripts for TGFA-IT1 Gene

mRNA/cDNA for TGFA-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TGFA-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TGFA-IT1 Gene

No ASD Table

Relevant External Links for TGFA-IT1 Gene

GeneLoc Exon Structure for
TGFA-IT1
ECgene alternative splicing isoforms for
TGFA-IT1

Expression for TGFA-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TGFA-IT1 Gene

genes like me logo Genes that share expression patterns with TGFA-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TGFA-IT1 Gene

Orthologs for TGFA-IT1 Gene

Evolution for TGFA-IT1 Gene

ENSEMBL:
Gene Tree for TGFA-IT1 (if available)
TreeFam:
Gene Tree for TGFA-IT1 (if available)

No data available for Orthologs for TGFA-IT1 Gene

Paralogs for TGFA-IT1 Gene

No data available for Paralogs for TGFA-IT1 Gene

Variants for TGFA-IT1 Gene

Sequence variations from dbSNP and Humsavar for TGFA-IT1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1001546605 -- 70,475,020(+) AAAGA(C/T)AGAGT intron-variant
rs1001547460 -- 70,478,465(+) TGTAT(C/T)TCACC intron-variant
rs1001829100 -- 70,480,209(+) GCCAG(C/T)AGTGA intron-variant, nc-transcript-variant
rs1002165687 -- 70,473,549(+) CAGAA(G/T)AACAA intron-variant
rs1002204612 -- 70,468,325(+) GCAGG(A/C)GTCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TGFA-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv834255 CNV gain 17160897

Relevant External Links for TGFA-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TGFA-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TGFA-IT1 Gene

Disorders for TGFA-IT1 Gene

Relevant External Links for TGFA-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TGFA-IT1

No disorders were found for TGFA-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TGFA-IT1 Gene

Publications for TGFA-IT1 Gene

  1. Common variants at 1p36 are associated with superior frontal gyrus volume. (PMID: 25335168) Hashimoto R … Ozaki N (Translational psychiatry 2014) 3 60
  2. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie AG … Butte NF (PloS one 2012) 3 60

Products for TGFA-IT1 Gene

Sources for TGFA-IT1 Gene

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