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Aliases & Descriptions for TGFA
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Descriptions transforming growth factor, alpha 2 transforming growth factor-alpha 2
Search outside databases for aliases for TGFA genePrevious GC identifers: GC02M070683 GC02M070885 GC02M070648
Summaries for TGFA (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for TGFA : Transforming growth factors (TGFs) are biologically active polypeptides that reversibly confer thetransformed phenotype on cultured cells. TGF-alpha shows about 40% sequence homology withepidermal growth factor (EGF; MIM 131530) and competes with EGF for binding to the EGF receptor(MIM 131550), stimulating its phosphorylation and producing a mitogenic response.[supplied byOMIM] UniProtKB/Swiss-Prot: TGFA_HUMAN, P01135 Function : TGF alpha is a mitogenic polypeptide that is able to bind to the EGF receptor and to actsynergistically with TGF beta to promote anchorage-independent cell proliferation in soft agar
Gene Wiki entry for TGFA (TGF_alpha)
Genomic Location for TGFA
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TGFA gene Entrez Gene cytogenetic band: 2p13 Ensembl cytogenetic band: 2p13.3 HGNC cytogenetic band: 2p13 TGFA Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 2 GeneLoc Exon Structure
GeneLoc location for GC02M070586:
(about GC identifiers )
Start:
70,527,924 bp from pter
End:
70,634,613 bp from pter
Size:
106,690 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000002.10 NT_022184.14 Proteins for TGFA
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: TGFA_HUMAN, P01135 (See
protein sequence )Recommended Name: Protransforming growth factor alpha precursor Size : 160 amino acids; 17006 Da
Subunit : Interacts with the PDZ domains of MAGI3, SDCBP and SNTA1. The interaction with SDCBP, isrequired for the targeting to the cell surface. In the endoplasmic reticulum, in its immature form(i.e. with a prosegment and lacking full N-glycosylation), interacts with CNIH. In the Golgiapparatus, may form a complex with CNIH and GORASP2
Subcellular location : Transforming growth factor alpha: Secreted, extracellular space
Subcellular location : Protransforming growth factor alpha: Cell membrane; Single-pass type Imembrane protein
PDB structures from and Proteopedia : 1GK5 (3D)
 1MOX (3D)
 1YUF (3D)
 1YUG (3D)
 2TGF (3D)
 3TGF (3D)
 4TGF (3D)
 
Secondary accessions : Q15577
REFSEQ proteins (2 alternative transcripts):
NP_001093161.1 NP_003227.1 ENSEMBL proteins: ENSP00000295400 ENSP00000377787 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for TGFA: Assays for TGFA:
Protein
Domains/ Families for TGFA(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P01135 ProtoNet protein and cluster: P01135
2 Blocks protein families : IPB001336 Type I EGF signature IPB006210 Type I EGF UniProtKB/Swiss-Prot: TGFA_HUMAN, P01135 Similarity : Contains 1 EGF-like domain
Gene Function for TGFA
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003236 Applied Biosystems Silencer ® siRNAs for TGFA Sigma-Aldrich siRNA and siRNA Panels for TGFA Sigma-Aldrich shRNA Panels and shRNA for TGFA Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099691                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099691                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001099691  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003236 UniProtKB/Swiss-Prot: TGFA_HUMAN, P01135 Function : TGF alpha is a mitogenic polypeptide that is able to bind to the EGF receptor and to actsynergistically with TGF beta to promote anchorage-independent cell proliferation in soft agar
Genatlas biochemistry entry for TGFA :transforming growth factor,alpha,17kDa,expressed in macrophages,brain cells,keratinocyte,alsoexpressed at high levels in the epithelial tissue of the medial edge of the palatal shelves at thetime of shelf fusion in mice,epidermal growth factor family,involved in mitogenesis andangiogenenesis,potentially mutated in cleft lip with or without cleft palate
13 MGI mutant phenotypes (inferred from 4 alleles ) (MGI details for Tgfa) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for TGFA
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5 Sigma-Aldrich "Your Favorite Gene" Pathways for TGFA (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TGFA 5/104 Interacting proteins for TGFA (ENSP00000295400 3 P01135 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 104
)About this table 5/6 Gene Ontology (GO) biological process terms (links to tree view) (see all 6
):
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Drugs & Compounds for TGFA (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for TGFA 10/39 Novoseek chemical compound relationships for TGFA gene (see all 39
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tyrosine
68.20
150
1572907 (5), 7980404 (4), 9716460 (2), 2302227 (2) (see all 92 )
thymidine
56.89
52
1717146 (3), 8033155 (2), 7714549 (2), 11466216 (2) (see all 34 )
tab-2
54.99
6
16879932 (1), 7507364 (1), 10891104 (1), 17073730 (1) (see all 5 )
bibx-1382bs
52.10
1
11178955 (1)
tgf beta1
51.83
29
14627647 (6), 10598907 (3), 10928772 (3), 16139244 (2) (see all 12 )
hrgbeta1
49.07
3
15714117 (2), 17237269 (1)
exotoxin-a
48.93
12
8501821 (2), 1512230 (2), 2352944 (1), 8826849 (1) (see all 7 )
progesterone
47.54
62
8624430 (5), 2064983 (3), 7672457 (3), 2173938 (3) (see all 32 )
estradiol
45.18
60
1319834 (8), 8297814 (3), 9184775 (3), 2334912 (2) (see all 29 )
pertuzumab
43.00
2
15503865 (1)
About this table
Transcripts for TGFA(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_003236 Sigma-Aldrich siRNA and siRNA Panels for TGFA Sigma-Aldrich shRNA Panels and shRNA for TGFA Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001099691 NM_003236
REFSEQ mRNAs for TGFA gene (2 alternative transcripts): NM_001099691.1 NM_003236.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001099691 NM_003236
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099691                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001099691                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001099691  
Additional cDNA sequence: AF149096.1 AF149097.1 AF149098.1 AK290151.1 AK309066.1 AK309220.1 AK312899.1 AY548763.1 BC005308.1 BT006833.1 K03222.1 M31172.1 X70340.1
3 DOTS entries : DT.409431 DT.92422695 DT.120952753
24/68 AceView cDNA sequences (see all 68
):AI858901 AW340378 AV727156 BX093407 BQ942216 BC005308 AL698738 AY548763 BU728692 BI760767 M31172 BV206634 AI347589 T27592 BT006833 BG741780 NM_003236 BM663384 AI167705 BI964715 BE925944 AF149096 BG740369 BF062540
highest scoring ESTs for TGFA :X70340 AF149096 AF149097 AF149098 AL698738 BT006833 K03222 M31172 BC005308 AA037107
Unigene Cluster for TGFA: Transforming growth factor, alpha Hs.170009 [show with all ESTs ] Unigene Representative Sequence: NM_003236 GeneLoc Exon Structure 5/8 Alternative Splicing Database (ASD) splice patterns (SP) for TGFA (see all 8
) ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b ^ 8 ^ 9 ^ 10a · 10b ^ 11 SP1 :       -   -     -   -             -         SP2 :       -   -     -   -             -         SP3 :       -   -     -   -             -   -   -     SP4 :       -   -     -   -                     SP5 :       -   -     -   -             -   -   -    
About this scheme ECgene alternative splicing isoforms for TGFA 2 Ensembl transcripts including schematic representations : ENST00000295400
ENST00000394241
Expression for TGFA
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TGFA expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TGFA 1 / 2 / 3
7 probe-sets matching TGFA gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.170009 Expression variation in blood from EXPOLDB for TGFA
Orthologs for TGFA
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for TGFA gene from 5 species
About this table Species with no ortholog for TGFA ENSEMBL Gene Tree for TGFA Paralogs for TGFA (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TGFA gene BTC 2 C9orf30 2 TMEFF2 2
SNPs/Variants for TGFA (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TGFA (up to first 250kb)
Disorders & Mutations for TGFA
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 190170 10/97 Novoseek disease relationships for TGFA gene (see all 97
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
70.33
904
11727256 (8), 1746909 (5), 1519669 (5), 7687782 (5) (see all 99 )
menetrier disease
64.87
35
1451986 (5), 8636814 (5), 8522306 (4), 15887112 (3) (see all 9 )
cholesteatoma middle ear
62.49
8
8817015 (2), 8369082 (1), 12725186 (1), 11078065 (1)
cleft lip
60.79
72
18788876 (3), 9003904 (3), 17334078 (3), 15449618 (3) (see all 34 )
carcinoma squamous cell
60.43
105
9828815 (5), 8843456 (4), 1863074 (3), 9625170 (3) (see all 53 )
cleft palate
59.59
60
15449618 (3), 8105683 (3), 17334078 (3), 10552925 (2) (see all 26 )
breast cancer
59.38
180
8508397 (5), 1912611 (4), 10668644 (4), 8137282 (3) (see all 89 )
colon carcinoma
57.71
61
8014008 (4), 8398905 (4), 11973637 (3), 9935234 (3) (see all 28 )
carcinoma
57.51
187
8523820 (5), 9542514 (4), 8371007 (4), 8625090 (3) (see all 99 )
hyperplasia
56.62
80
10233260 (2), 10708482 (2), 8371007 (2), 12607604 (2) (see all 51 )
About this table Genetic Association Database: TGFA Human Genome Epidemiology Navigator: TGFA (29 documents) Tumor Gene Database : TGFA Breast Cancer Gene Database : TGFA
Medical News for TGFA (Possibly Related Articles in
Doctor's Guide )
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Publications for TGFA (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/1842 PubMed articles for TGFA gene (see all 1842
): Transforming growth factor-alpha (TGFA): genomic structure, boundary sequences, and mutation analysis in nonsyndromic cleft lip/palate and cleft palate only. (PubMed id 10552925) 1, 2, 3, 4 Machida J....Murray J.C. (1999) [The TGF-alpha gene Taq I polymorphism and non-syndromic cleft lip with or without cleft palate] (PubMed id 15449618) 1, 3, 6 Zhang W.G....Liang J. (2004) Transforming growth factor-alpha and nonsyndromic cleft lip with or without palate in Brazilian patients: results of a large case-control study. (PubMed id 15222785) 1, 3, 6 Passos-Bueno M.R....Araujo B. (2004) Transforming growth factor-alpha: characterization of the BamHI, RsaI, and TaqI polymorphic regions. (PubMed id 8100397) 1, 3, 4 Qian J.F.... May E. (1993) Oral clefts, maternal smoking, and TGFA: a meta-analysis of gene-environment interaction. (PubMed id 15643916) 1, 3, 6 Zeiger J.S....Liang K.Y. (2005) [Possible association due to linkage disequilibrium of TGFA, RARA and BCL3 with nonsyndromic cleft lip with or without cleft palate in the Chilean population] (PubMed id 16311697) 1, 3, 6 Suazo J....Blanco R. (2005) Microsatellite polymorphisms in the epidermal growth factor receptor (EGFR) gene and the transforming growth factor-alpha (TGFA) gene and risk of oral cancer in Puerto Rico. (PubMed id 15864136) 3, 6 Kang D....Hayes R.B. (2005) Genotyping for cytokine polymorphisms: allele frequencies in the Italian population. (PubMed id 12558814) 3, 6 Uboldi de Capei M.U....Curtoni E.S. (2003) Variants of developmental genes (TGFA, TGFB3, and MSX1) and their associations with orofacial clefts: a case-parent triad analysis. (PubMed id 12652527) 3, 6 Jugessur A....Abyholm F. (2003) A role for a PDZ protein in the early secretory pathway for the targeting of proTGF-alpha to the cell surface. (PubMed id 10230395) 3, 4 Fernandez-Larrea J....Arribas J. (1999)
Search for TGFA
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Genome Databases showing TGFA
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing TGFA
(According to HUGE )
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--
Specialized Databases showing TGFA (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for TGFA (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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GeneCards Homepage - Last full update: 2 Jul 2009
Incremental update: 13 Oct 2009