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Aliases for TFP1 Gene

Aliases for TFP1 Gene

  • Transferrin Pseudogene 1 2 3 5
  • Transferrin Pseudogene 2
  • TFP 3

External Ids for TFP1 Gene

Previous HGNC Symbols for TFP1 Gene

  • TFP

Previous GeneCards Identifiers for TFP1 Gene

  • GC03P133407
  • GC03P130774

Summaries for TFP1 Gene

GeneCards Summary for TFP1 Gene

TFP1 (Transferrin Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFP1 Gene

Genomics for TFP1 Gene

Regulatory Elements for TFP1 Gene

Enhancers for TFP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F133591 0.6 Ensembl ENCODE 17.7 -70.4 -70444 0.9 HLF JUN CEBPB EP300 ZEB1 RFX5 ZNF121 JUND MAFF TFP1 TOPBP1 BFSP2-AS1 RNU6-678P BFSP2 CDV3 GC03P133653
GH03F133620 0.5 ENCODE 11.6 -41.7 -41747 0.2 HDGF TBP PKNOX1 MXI1 TBL1XR1 WRNIP1 POLR2A ETV6 MTA2 ZBED1 TFP1 TOPBP1 BFSP2-AS1 GC03P133653 CDV3
GH03F133609 0.2 ENCODE 11.5 -52.3 -52295 0.3 NFE2 TFP1 TOPBP1 TF CDV3 GC03P133653
GH03F133595 0.2 Ensembl 11.2 -66.5 -66498 0.2 GATA3 JUND FOS TFP1 TOPBP1 BFSP2-AS1 RNU6-678P BFSP2 CDV3 GC03P133653
GH03F133540 1.1 Ensembl ENCODE 11.1 -120.8 -120798 1.2 ELF3 DRAP1 TBP SAP130 ZNF644 YY1 RELA ZKSCAN1 EED HNF4G TFP1 CDV3 ENSG00000272832 GC03P133492
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TFP1 on UCSC Golden Path with GeneCards custom track

Promoters for TFP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001374253 -498 2601 PKNOX1 ATF1 CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF48 ETS1 ELK1

Genomic Location for TFP1 Gene

Chromosome:
3
Start:
133,661,998 bp from pter
End:
133,754,576 bp from pter
Size:
92,579 bases
Orientation:
Plus strand

Genomic View for TFP1 Gene

Genes around TFP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFP1 Gene

Proteins for TFP1 Gene

Post-translational modifications for TFP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFP1 Gene

Domains & Families for TFP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFP1 Gene

Function for TFP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFP1 Gene

Localization for TFP1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TFP1 Gene COMPARTMENTS Subcellular localization image for TFP1 gene
Compartment Confidence
vacuole 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TFP1 Gene

Pathways & Interactions for TFP1 Gene

SuperPathways for TFP1 Gene

No Data Available

Interacting Proteins for TFP1 Gene

Gene Ontology (GO) - Biological Process for TFP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TFP1 Gene

Transcripts for TFP1 Gene

mRNA/cDNA for TFP1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TFP1 Gene

No ASD Table

Relevant External Links for TFP1 Gene

GeneLoc Exon Structure for
TFP1
ECgene alternative splicing isoforms for
TFP1

Expression for TFP1 Gene

mRNA expression in normal human tissues for TFP1 Gene

mRNA differential expression in normal tissues according to GTEx for TFP1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x15.4), Liver (x14.5), and Brain - Substantia nigra (x5.7).

NURSA nuclear receptor signaling pathways regulating expression of TFP1 Gene:

TFP1
genes like me logo Genes that share expression patterns with TFP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TFP1 Gene

Orthologs for TFP1 Gene

Evolution for TFP1 Gene

ENSEMBL:
Gene Tree for TFP1 (if available)
TreeFam:
Gene Tree for TFP1 (if available)

No data available for Orthologs for TFP1 Gene

Paralogs for TFP1 Gene

No data available for Paralogs for TFP1 Gene

Variants for TFP1 Gene

Relevant External Links for TFP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TFP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TFP1 Gene

Disorders for TFP1 Gene

Relevant External Links for TFP1

Genetic Association Database (GAD)
TFP1

No disorders were found for TFP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TFP1 Gene

Publications for TFP1 Gene

  1. Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (PMID: 19084217) Benyamin B. … Visscher P.M. (Am. J. Hum. Genet. 2009) 3 46 64
  2. A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity? (PMID: 25534755) Chaste P. … Devlin B. (Biol. Psychiatry 2015) 3 64
  3. MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity. (PMID: 22678362) Stehling O. … Lill R. (Science 2012) 3 64
  4. Complete structure of the human transferrin gene. Comparison with analogous chicken gene and human pseudogene. (PMID: 3678832) Schaeffer E. … Zakin M.M. (Gene 1987) 3 64

Products for TFP1 Gene

Sources for TFP1 Gene

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