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Aliases for TFP1 Gene

Aliases for TFP1 Gene

  • Transferrin Pseudogene 1 2 3 5
  • Transferrin Pseudogene 2
  • TFP 3

External Ids for TFP1 Gene

Previous HGNC Symbols for TFP1 Gene

  • TFP

Previous GeneCards Identifiers for TFP1 Gene

  • GC03P133407
  • GC03P130774

Summaries for TFP1 Gene

GeneCards Summary for TFP1 Gene

TFP1 (Transferrin Pseudogene 1) is a Pseudogene.

Additional gene information for TFP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFP1 Gene

Genomics for TFP1 Gene

Regulatory Elements for TFP1 Gene

Enhancers for TFP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H134347 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.2 +699.8 699844 29.2 HDGF PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 ENSG00000260633 RYK TOPBP1 TFP1 RAB6B AMOTL2 MIR6827 RPL39P5
GH03H133441 1.5 Ensembl ENCODE dbSUPER 10.7 -208.3 -208298 24.8 PKNOX1 FOXA2 SIN3A FEZF1 YY1 TCF12 ZNF766 GATA2 ZNF207 FOS BFSP2 CDV3 TFP1 TOPBP1 RNU6-678P BFSP2-AS1 ENSG00000249820
GH03H133591 0.9 Ensembl ENCODE 17.7 -70.4 -70444 0.9 JUN HLF CEBPB EP300 ZEB1 RFX5 ZNF121 JUND MAFF TFP1 TOPBP1 BFSP2-AS1 RNU6-678P BFSP2 CDV3 GC03P133653
GH03H133479 1.3 Ensembl ENCODE dbSUPER 10.3 -181.8 -181843 1.2 HDGF PKNOX1 FEZF1 ZIC2 RFX5 POLR2A EED PRDM10 RUNX3 KLF8 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 BFSP2 GC03P133482 GC03P133475 GC03P133476
GH03H133473 1.3 Ensembl ENCODE dbSUPER 10.3 -185.5 -185498 5.5 PKNOX1 TBL1XR1 BATF ATF7 ETV6 RUNX3 IKZF2 CREM CBFB JUNB BFSP2 BFSP2-AS1 ENSG00000250983 ENSG00000201827 CDV3 TFP1 TOPBP1 GC03P133476 GC03P133475 GC03P133482
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TFP1 on UCSC Golden Path with GeneCards custom track

Promoters for TFP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158634 -298 1801 PKNOX1 ATF1 ARID4B SIN3A FEZF1 DMAP1 ETS1 ELK1 ATF7 RUNX3

Genomic Locations for TFP1 Gene

Genomic Locations for TFP1 Gene
chr3:133,661,998-133,754,576
(GRCh38/hg38)
Size:
92,579 bases
Orientation:
Plus strand
chr3:133,380,842-133,473,420
(GRCh37/hg19)

Genomic View for TFP1 Gene

Genes around TFP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFP1 Gene

Proteins for TFP1 Gene

Post-translational modifications for TFP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFP1 Gene

Domains & Families for TFP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFP1 Gene

Function for TFP1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFP1 Gene

Localization for TFP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TFP1 Gene

Pathways & Interactions for TFP1 Gene

No Data Available

Interacting Proteins for TFP1 Gene

Gene Ontology (GO) - Biological Process for TFP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TFP1 Gene

Drugs & Compounds for TFP1 Gene

No Compound Related Data Available

Transcripts for TFP1 Gene

mRNA/cDNA for TFP1 Gene

(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TFP1 Gene

No ASD Table

Relevant External Links for TFP1 Gene

GeneLoc Exon Structure for
TFP1
ECgene alternative splicing isoforms for
TFP1

Expression for TFP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TFP1 Gene

mRNA differential expression in normal tissues according to GTEx for TFP1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x15.4), Liver (x14.5), and Brain - Substantia nigra (x5.7).

NURSA nuclear receptor signaling pathways regulating expression of TFP1 Gene:

TFP1
genes like me logo Genes that share expression patterns with TFP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TFP1 Gene

Orthologs for TFP1 Gene

Evolution for TFP1 Gene

ENSEMBL:
Gene Tree for TFP1 (if available)
TreeFam:
Gene Tree for TFP1 (if available)

No data available for Orthologs for TFP1 Gene

Paralogs for TFP1 Gene

No data available for Paralogs for TFP1 Gene

Variants for TFP1 Gene

Relevant External Links for TFP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TFP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TFP1 Gene

Disorders for TFP1 Gene

Relevant External Links for TFP1

Genetic Association Database (GAD)
TFP1

No disorders were found for TFP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TFP1 Gene

Publications for TFP1 Gene

  1. Variants in TF and HFE explain approximately 40% of genetic variation in serum-transferrin levels. (PMID: 19084217) Benyamin B … Visscher PM (American journal of human genetics 2009) 3 45 60
  2. A genome-wide association study of autism using the Simons Simplex Collection: Does reducing phenotypic heterogeneity in autism increase genetic homogeneity? (PMID: 25534755) Chaste P … Devlin B (Biological psychiatry 2015) 3 60
  3. MMS19 assembles iron-sulfur proteins required for DNA metabolism and genomic integrity. (PMID: 22678362) Stehling O … Lill R (Science (New York, N.Y.) 2012) 3 60
  4. Complete structure of the human transferrin gene. Comparison with analogous chicken gene and human pseudogene. (PMID: 3678832) Schaeffer E … Zakin MM (Gene 1987) 3 60

Products for TFP1 Gene

Sources for TFP1 Gene

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