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Aliases & Descriptions for TFF1
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase, and/or 9Nature:405,311-319 and CroW21) About This Section
|
| Aliases |
|---|
| BCEI 2, 3, 5 | | D21S21 1, 2 | | HP1.A 1, 2 | | HPS2 1, 2 | | PNR-2 3 | | PS2 3 | | hP1.A 3 | | pNR-2 1, 2 | | pS2 1, 2 |
| | | Descriptions |
|---|
| Breast cancer estrogen-inducible protein 3 | | Polypeptide P1.A 3 | | Protein pS2 3 | | breast cancer estrogen-inducible sequence 2 | | breast cancer, estrogen-inducible sequence expressed in 1 | | gastrointestinal trefoil protein pS2 2 | | trefoil factor 1 2 | trefoil factor, BCE1, human pS2 induced by estrogen from human breast cancer cell line M 9 |
|
| | Search outside databases for aliases for TFF1 genePrevious GC identifers: GC21M040330 GC21M042676 |
Summaries for TFF1(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for TFF1: Members of the trefoil family are characterized by having at least one copy of the trefoil motif, a 40-amino acid domain that contains three conserved disulfides. They are stable secretory proteins expressed in gastrointestinal mucosa. Their functions are not defined, but they may protect the mucosa from insults, stabilize the mucus layer, and affect healing of the epithelium. This gene, which is expressed in the gastric mucosa, has also been studied because of its expression in human tumors. This gene and two other related trefoil family member genes are found in a cluster on chromosome 21. [provided by RefSeq] UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155Function: Stabilizer of the mucous gel overlying the gastrointestinal mucosa that provides a physical barrier against various noxious agents. May inhibit the growth of calcium oxalate crystals in urineGene Wiki entry for TFF1 (Trefoil_factor_1) |
Genomic Location for TFF1
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences, Whole Chromsome Sequence According to
Nature (Cited Here with Permission):405,311-319 and CroW21) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 21q22.3 Ensembl cytogenetic band: 21q22.3 HGNC cytogenetic band: 21q22.3 Nature(405: 311-319) cytogenetic band: 21q22.3 | TFF1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 |
| GC21M042655: |
GeneLoc |
Nature:405,311-319 |
Start:
|
42,655,460 bp from pter |
29,329,717 bp from centromere |
End:
|
42,659,713 bp from pter |
29,333,970 bp from centromere |
Size:
|
4,254 bases |
4,254 bases |
Orientation:
|
minus strand |
minus strand |
RefSeq DNA sequence:- NC_000021.7 NT_030188.4
| Whole chromosome sequencing: |
| cDNA sequence: |
X00474 | | genomic clones: |
KB169B4 |
Proteins for TFF1
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155 (See
protein sequence)Recommended Name: Trefoil factor 1 precursor Size: 84 amino acids; 9150 Da
Subunit: Heterodimer with GKN2; disulfide linked
Subcellular location: Secreted
PDB structure from and Proteopedia :1HI7 (3D)
 1PS2 (3D)
 REFSEQ proteins: NP_003216.1
ENSEMBL proteins: ENSP00000291527
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005576 | extracellular region |
IEA | -- | About this table
Antibodies for TFF1: Assays for TFF1: | Protein
Domains/ Families for TFF1(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P04155
ProtoNet protein and cluster: P04155 1 Blocks protein family: IPB000519 P-type trefoil domain
UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155Similarity: Contains 1 P-type (trefoil) domain | Gene Function for TFF1
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003225
Applied Biosystems Silencer® siRNAs for TFF1
Sigma-Aldrich siRNA and siRNA Panels for TFF1  Sigma-Aldrich shRNA Panels and shRNA for TFF1  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003225                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003225                                  untagged cDNA clone in CMV expression vector: NM_003225 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003225
UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155Function: Stabilizer of the mucous gel overlying the gastrointestinal mucosa that provides a physical barrier against various noxious agents. May inhibit the growth of calcium oxalate crystals in urineGenatlas biochemistry entry for TFF1:estrogen-inducible protein,expressed in breast cancer,and some digestive tumors (stomach,pancreas,biliary tract)2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Tff1):
1 Gene Ontology (GO) molecular function term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008083 | growth factor activity |
IEA | -- | About this table | Pathways & Interactions for TFF1
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for TFF1 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for TFF1 
5/34 Interacting proteins for TFF1 (ENSP000002915273 P041552) via UniProtKB, MINT, and/or STRING (see all 34
)About this table
3 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for TFF1(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TFF1 10/38 Novoseek chemical compound relationships for TFF1 gene (see all 38
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| progesterone |
78.63 |
170 |
8754494 (4), 9737246 (3), 17883902 (2), 1562465 (2) (see all 99) |
| estradiol |
68.77 |
47 |
1319834 (4), 7867021 (4), 16651411 (3), 8915481 (2) (see all 30) |
| arzoxifene |
55.99 |
1 |
15149724 (1) |
| methylseleninic acid |
52.14 |
1 |
16093440 (1) |
| (+-)-fenvalerate |
51.34 |
3 |
10064545 (1), 12396874 (1), 12437293 (1) |
| steroid |
48.00 |
37 |
10080679 (5), 19132993 (4), 1515241 (2), 7561244 (2) (see all 23) |
| genistin |
46.38 |
2 |
15131010 (1), 11577007 (1) |
| nonylphenol |
44.00 |
5 |
10811566 (2), 9158695 (2), 16393665 (1) |
| isoflavone |
43.21 |
1 |
16424064 (1) |
| tetrabromobisphenol a |
42.20 |
2 |
12753421 (1), 11693576 (1) |
About this table
|
Transcripts for TFF1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003225
Sigma-Aldrich siRNA and siRNA Panels for TFF1  Sigma-Aldrich shRNA Panels and shRNA for TFF1  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_003225 REFSEQ mRNAs for TFF1 gene: NM_003225.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_003225               OriGene GFP tagged cDNA clone in CMV expression vector: NM_003225                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_003225                                  untagged cDNA clone in CMV expression vector: NM_003225  Additional cDNA sequence: BC032811.1 M12075.1 X00474.1 X52003.1 7 DOTS entries: DT.75173682 DT.100060235 DT.121132799 DT.95319988 DT.97864290 DT.100741977 DT.75147373 24/190 AceView cDNA sequences (see all 190
):BM856237 BM855700 BM855692 BM850313 BM142503 BX341674 R55292 BM855339 BM854657 AA858276 BF435137 BM855263 CK820254 BM853943 AA524242 BM768507 BM786056 AI925552 AK172842 CK820253 AI970839 AB038157 BM856488 BM853888
highest scoring ESTs for TFF1:AA307578 AA308400 AA314326 AA314825 AA506787 AA514776 AA568312 AA573793 AA578674 AA588034 Unigene Cluster for TFF1: Trefoil factor 1 Hs.162807 [show with all ESTs]Unigene Representative Sequence: BM923753
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000291527
|
Expression for TFF1
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TFF1 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TFF1
1 / 2 / 3 3 probe-sets matching TFF1 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: CTGGCCCTCG
SOURCE GeneReport for Unigene cluster: Hs.162807
Expression variation in blood from EXPOLDB for TFF1 UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155Tissue specificity: Found in stomach, with highest levels in the upper gastric mucosal cells (at protein level). Detected in goblet cells of the small and large intestine and rectum, small submucosal glands in the esophagus, mucous acini of the sublingual gland, submucosal glands of the trachea, and epithelial cells lining the exocrine pancreatic ducts but not in the remainder of the pancreas (at protein level). Scattered expression is detected in the epithelial cells of the gallbladder and submucosal glands of the vagina, and weak expression is observed in the bronchial goblet cells of the pseudostratified epithelia in the respiratory system (at protein level). Detected in urine (at protein level). Strongly expressed in breast cancer but at low levels in normal mammary tissue. It is regulated by estrogen in MCF-7 cells. Strong expression found in normal gastric mucosa and in the regenerative tissues surrounding ulcerous lesions of gastrointestinal tract, but lower expression found in gastric cancer (at protein level) |
Orthologs for TFF1
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TFF1 gene from 3 species
About this table Species with no ortholog for TFF1
ENSEMBL Gene Tree for TFF1 | Paralogs for TFF1(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for TFF1 gene
- TFF22 TFF32
|
SNPs/Variants for TFF1(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TFF1 (up to first 250kb)
|
Disorders & Mutations for TFF1
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 113710
UniProtKB/Swiss-Prot: TFF1_HUMAN, P04155
Expressed in a number of carcinomas including breast (50%), pancreas (70-75%), stomach (50-55%), and large bowel (58%)10/79 Novoseek disease relationships for TFF1 gene (see all 79
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| breast cancer |
81.25 |
219 |
11919164 (6), 9260605 (4), 16267614 (4), 8161252 (4) (see all 99) |
| breast carcinoma |
74.70 |
54 |
8110971 (3), 10080679 (3), 1352440 (2), 7720888 (2) (see all 39) |
| carcinoma ductal |
61.32 |
15 |
11709137 (2), 8385977 (2), 15375487 (2), 8253523 (1) (see all 11) |
| metaplasia |
60.32 |
33 |
10190312 (4), 7557569 (3), 9600121 (3), 8818606 (2) (see all 16) |
| gastric cancer |
59.34 |
88 |
12324709 (6), 16697734 (5), 15059374 (4), 16718800 (4) (see all 27) |
| gastric carcinoma |
57.37 |
54 |
8911122 (6), 14601088 (5), 12379766 (5), 17143957 (4) (see all 14) |
| tumors |
56.94 |
282 |
2354435 (7), 7667210 (6), 14756547 (6), 9587935 (5) (see all 99) |
| ductal breast carcinoma |
53.72 |
3 |
11523925 (1), 9202892 (1), 11060273 (1) |
| carcinoma |
53.62 |
103 |
9221798 (4), 8818606 (3), 11327531 (3), 2306733 (3) (see all 43) |
| intestinal carcinoma |
52.32 |
4 |
8911122 (1), 12210076 (1) |
About this table
Human Genome Epidemiology Navigator: TFF1 (1 document)
|
Medical News for TFF1(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TFF1 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/544 PubMed articles for TFF1 gene (see all 544
):- Complete primary structure of the human estrogen-responsive gene (pS2) product. (PubMed id 2185238)1, 3, 4 Mori K.... Hayashi K. (1990)
- Expression of the pS2 gene in human gastric cancer cells derived from poorly differentiated adenocarcinoma. (PubMed id 2311759)1, 3, 4 Takahashi H....Hayashi K. (1990)
- Expression of trefoil factors 1 and 2 in precancerous condition and gastric cancer. (PubMed id 16718800)1, 3, 4 Shi S.Q....Yang J.M. (2006)
- Interaction between TFF1, a gastric tumor suppressor trefoil protein, and TFIZ1, a brichos domain-containing protein with homology to SP-C. (PubMed id 15924415)1, 3, 4 Westley B.R....May F.E. (2005)
- Identification of human urinary trefoil factor 1 as a novel calcium oxalate crystal growth inhibitor. (PubMed id 16308573)1, 3, 4 Chutipongtanate S....Thongboonkerd V. (2005)
- Human trefoil peptides: genomic structure in 21q22.3 and coordinated expression. (PubMed id 9043862)1, 2, 3 Gott P....Blin N. (1996)
- Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161)3, 4 Zhang Z. and Henzel W.J. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The DNA sequence of human chromosome 21. (PubMed id 10830953)3, 4 Hattori M....Yaspo M.L. (2000)
- Refined localization of autosomal recessive nonsyndromic deafness DFNB10 locus using 34 novel microsatellite markers, genomic structure, and exclusion of six known genes in the region. (PubMed id 10950923)3, 4 Berry A.... Bonne-Tamir B. (2000)
|
Search for TFF1
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TFF1
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TFF1
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TFF1(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TFF1(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
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Incremental update: 13 Oct 2009
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