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Aliases for TFAP2A-AS1 Gene

Subcategory (RNA class) for TFAP2A-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TFAP2A-AS1 Gene

  • TFAP2A Antisense RNA 1 2 3 5

External Ids for TFAP2A-AS1 Gene

Previous GeneCards Identifiers for TFAP2A-AS1 Gene

  • GC06P010417
  • GC06P010419
  • GC06P010416
  • GC06P010418
  • GC06P010420
  • GC06P010421

Summaries for TFAP2A-AS1 Gene

GeneCards Summary for TFAP2A-AS1 Gene

TFAP2A-AS1 (TFAP2A Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFAP2A-AS1 Gene

Genomics for TFAP2A-AS1 Gene

Regulatory Elements for TFAP2A-AS1 Gene

Enhancers for TFAP2A-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F011143 1.8 FANTOM5 Ensembl ENCODE 10.4 +734.7 734729 1.9 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 SLC30A9 ENSG00000247925 TFAP2A-AS1 TMEM170B NEDD9 C6orf52 GC06P011137 ENSG00000271245
GH06F010382 1.3 FANTOM5 Ensembl ENCODE 12.1 -25.9 -25891 2.7 TBP TAF1 SUZ12 MAX ZKSCAN1 E2F1 POLR2A MAFK E2F6 EZH2 TFAP2A TFAP2A-AS1 ENSG00000228478 LOC442161
GH06F011341 1.3 FANTOM5 Ensembl ENCODE 10.4 +932.6 932562 1.0 JUND ZNF26 CEBPA JUN CEBPB EP300 RAD21 YY1 TFAP2A-AS1 TMEM170B NEDD9 GC06M011330 LOC105374925
GH06F010449 1.1 Ensembl ENCODE 11.4 +42.5 42487 4.2 TBP ATF1 SIN3A RAD21 RFX5 RCOR1 FOS CREM EGR2 SMARCC1 ENSG00000228478 TFAP2A TFAP2A-AS1 GCNT2 MRPL48P1 MIR5689
GH06F010889 1.1 Ensembl ENCODE 10.1 +480.3 480261 0.8 PKNOX1 ATF1 TBL1XR1 DEAF1 BMI1 CHAMP1 ZNF766 ELK1 CBX5 ETV6 RNA5SP203 TFAP2A-AS1 SYCP2L GC06M010903
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TFAP2A-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for TFAP2A-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001878098 -339 1599 PKNOX1 FEZF1 ZNF335 GLIS2 ZNF366 CEBPB ZEB2 ZNF843 ZFP69B ZSCAN16

Genomic Location for TFAP2A-AS1 Gene

10,409,340 bp from pter
10,416,446 bp from pter
7,107 bases
Plus strand

Genomic View for TFAP2A-AS1 Gene

Genes around TFAP2A-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFAP2A-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFAP2A-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFAP2A-AS1 Gene

Proteins for TFAP2A-AS1 Gene

Post-translational modifications for TFAP2A-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFAP2A-AS1 Gene

Domains & Families for TFAP2A-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFAP2A-AS1 Gene

Function for TFAP2A-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFAP2A-AS1 Gene

Localization for TFAP2A-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TFAP2A-AS1 Gene

Pathways & Interactions for TFAP2A-AS1 Gene

SuperPathways for TFAP2A-AS1 Gene

No Data Available

Interacting Proteins for TFAP2A-AS1 Gene

Gene Ontology (GO) - Biological Process for TFAP2A-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for TFAP2A-AS1 Gene

Transcripts for TFAP2A-AS1 Gene

mRNA/cDNA for TFAP2A-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TFAP2A-AS1 Gene

No ASD Table

Relevant External Links for TFAP2A-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TFAP2A-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TFAP2A-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TFAP2A-AS1 Gene

This gene is overexpressed in Prostate (x9.3), Skin - Not Sun Exposed (Suprapubic) (x4.4), and Skin - Sun Exposed (Lower leg) (x4.0).
genes like me logo Genes that share expression patterns with TFAP2A-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TFAP2A-AS1 Gene

Orthologs for TFAP2A-AS1 Gene

Evolution for TFAP2A-AS1 Gene

Gene Tree for TFAP2A-AS1 (if available)
Gene Tree for TFAP2A-AS1 (if available)

No data available for Orthologs for TFAP2A-AS1 Gene

Paralogs for TFAP2A-AS1 Gene

No data available for Paralogs for TFAP2A-AS1 Gene

Variants for TFAP2A-AS1 Gene

Sequence variations from dbSNP and Humsavar for TFAP2A-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1051512 -- 10,415,901(+) TGCAG(C/T)GTGTA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111994530 -- 10,410,501(+) TCAAG(A/T)GAAAC intron-variant, upstream-variant-2KB
rs112045626 -- 10,411,059(+) CCCCC(C/G)CCCCT intron-variant, upstream-variant-2KB
rs112157592 -- 10,414,489(+) TGAAT(G/T)AATAG intron-variant, upstream-variant-2KB
rs112549863 -- 10,413,633(+) GGACC(A/C)CCCCA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TFAP2A-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2667708 CNV deletion 23128226
nsv1022072 CNV gain 25217958

Relevant External Links for TFAP2A-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TFAP2A-AS1 Gene

Disorders for TFAP2A-AS1 Gene

Relevant External Links for TFAP2A-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TFAP2A-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TFAP2A-AS1 Gene

Publications for TFAP2A-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TFAP2A-AS1 Gene

Sources for TFAP2A-AS1 Gene

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