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Aliases for TFAMP2 Gene

Aliases for TFAMP2 Gene

  • Transcription Factor A, Mitochondrial Pseudogene 2 2 3 5
  • Transcription Factor 6-Like 3 (Mitochondrial Transcription Factor 1-Like) 2 3
  • Processed Pseudogene MtTFA 2 3
  • TCF6L3 3
  • MTTF1 3

External Ids for TFAMP2 Gene

Previous HGNC Symbols for TFAMP2 Gene

  • TCF6L3

Previous GeneCards Identifiers for TFAMP2 Gene

  • GC11M109282
  • GC11M109776

Summaries for TFAMP2 Gene

GeneCards Summary for TFAMP2 Gene

TFAMP2 (Transcription Factor A, Mitochondrial Pseudogene 2) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFAMP2 Gene

Genomics for TFAMP2 Gene

Regulatory Elements for TFAMP2 Gene

Enhancers for TFAMP2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G109945 1.5 Ensembl ENCODE dbSUPER 0.3 -38.6 -38643 1.4 ATF1 WRNIP1 ARID4B SIN3A CBX5 ZNF143 ZNF207 JUNB REST MIER2 ZC3H12C LOC105369484 TFAMP2
GH11G109913 0.8 ENCODE 0.4 -7.0 -6972 2.3 TEAD4 JUN BACH1 RBBP5 CEBPG FOSL1 ZNF316 GATA2 NFE2 TRIM24 ZC3H12C TFAMP2 LOC105369484
GH11G109939 1 Ensembl ENCODE 0.3 -31.5 -31535 0.4 CTCF ZNF654 NFIA TRIM22 REST RAD21 RFX5 MEF2D NFIC KLF16 LOC105369484 TFAMP2
GH11G109940 0.9 ENCODE 0.3 -33.0 -32970 1.3 HDAC1 PKNOX1 CBX3 ATF1 NFRKB CHAMP1 FOS CREM ZNF592 NFIC ZC3H12C LOC105369484 TFAMP2
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TFAMP2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TFAMP2 Gene

Chromosome:
11
Start:
109,905,922 bp from pter
End:
109,907,866 bp from pter
Size:
1,945 bases
Orientation:
Minus strand

Genomic View for TFAMP2 Gene

Genes around TFAMP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TFAMP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TFAMP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFAMP2 Gene

Proteins for TFAMP2 Gene

Post-translational modifications for TFAMP2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFAMP2 Gene

Domains & Families for TFAMP2 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFAMP2 Gene

Function for TFAMP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TFAMP2 Gene

Localization for TFAMP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TFAMP2 Gene

Pathways & Interactions for TFAMP2 Gene

SuperPathways for TFAMP2 Gene

No Data Available

Interacting Proteins for TFAMP2 Gene

Gene Ontology (GO) - Biological Process for TFAMP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TFAMP2 Gene

Transcripts for TFAMP2 Gene

mRNA/cDNA for TFAMP2 Gene

(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TFAMP2 Gene

No ASD Table

Relevant External Links for TFAMP2 Gene

GeneLoc Exon Structure for
TFAMP2
ECgene alternative splicing isoforms for
TFAMP2

Expression for TFAMP2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TFAMP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of TFAMP2 Gene:

TFAMP2
genes like me logo Genes that share expression patterns with TFAMP2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TFAMP2 Gene

Orthologs for TFAMP2 Gene

Evolution for TFAMP2 Gene

ENSEMBL:
Gene Tree for TFAMP2 (if available)
TreeFam:
Gene Tree for TFAMP2 (if available)

No data available for Orthologs for TFAMP2 Gene

Paralogs for TFAMP2 Gene

No data available for Paralogs for TFAMP2 Gene

Variants for TFAMP2 Gene

Relevant External Links for TFAMP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TFAMP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TFAMP2 Gene

Disorders for TFAMP2 Gene

No disorders were found for TFAMP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TFAMP2 Gene

Publications for TFAMP2 Gene

  1. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. (PMID: 12095695) Reyes A. … Gadaleta G. (Gene 2002) 3 64

Products for TFAMP2 Gene

Sources for TFAMP2 Gene

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