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Aliases for TFAMP1 Gene

Subcategory (RNA class) for TFAMP1 Gene

lncRNA

Aliases for TFAMP1 Gene

  • Transcription Factor A, Mitochondrial Pseudogene 1 2 3
  • Transcription Factor 6-Like 1 (Mitochondrial Transcription Factor 1-Like) 2 3
  • Processed Pseudogene MtTFA 1 3
  • TCF6L1 3
  • MTTF1 3

External Ids for TFAMP1 Gene

ORGUL Members for TFAMP1 Gene

Previous HGNC Symbols for TFAMP1 Gene

  • TCF6L1

Previous GeneCards Identifiers for TFAMP1 Gene

  • GC07P001623
  • GC07P001573
  • GC07P001654

Summaries for TFAMP1 Gene

GeneCards Summary for TFAMP1 Gene

TFAMP1 (Transcription Factor A, Mitochondrial Pseudogene 1) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TFAMP1 Gene

Genomics for TFAMP1 Gene

Regulatory Elements for TFAMP1 Gene

Genomic Location for TFAMP1 Gene

Start:
1,614,470 bp from pter
End:
1,616,692 bp from pter
Size:
2,223 bases
Orientation:
Plus strand

Genomic View for TFAMP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TFAMP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TFAMP1 Gene

Proteins for TFAMP1 Gene

Post-translational modifications for TFAMP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TFAMP1 Gene

Domains for TFAMP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TFAMP1 Gene

Function for TFAMP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TFAMP1 Gene

Localization for TFAMP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TFAMP1 Gene

Pathways for TFAMP1 Gene

SuperPathways for TFAMP1 Gene

No Data Available

Interacting Proteins for TFAMP1 Gene

Gene Ontology (GO) - Biological Process for TFAMP1 Gene

None

No data available for Pathways by source for TFAMP1 Gene

Transcripts for TFAMP1 Gene

mRNA/cDNA for TFAMP1 Gene

(1) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TFAMP1 Gene

Transcription factor A, mitochondrial pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TFAMP1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TFAMP1 Gene

No ASD Table

Relevant External Links for TFAMP1 Gene

GeneLoc Exon Structure for
TFAMP1
ECgene alternative splicing isoforms for
TFAMP1

Expression for TFAMP1 Gene

mRNA expression in normal human tissues for TFAMP1 Gene

mRNA differential expression in normal tissues according to GTEx for TFAMP1 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (7.0), Brain - Cerebellum (5.8), Brain - Caudate (basal ganglia) (4.7), and Brain - Putamen (basal ganglia) (4.5).

SOURCE GeneReport for Unigene cluster for TFAMP1 Gene Hs.534596

genes like me logo Genes that share expressions with TFAMP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for TFAMP1 Gene

Orthologs for TFAMP1 Gene

Evolution for TFAMP1 Gene

ENSEMBL:
Gene Tree for TFAMP1 (if available)
TreeFam:
Gene Tree for TFAMP1 (if available)

No data available for Orthologs for TFAMP1 Gene

Paralogs for TFAMP1 Gene

No data available for Paralogs for TFAMP1 Gene

Variants for TFAMP1 Gene

Sequence variations from dbSNP and Humsavar for TFAMP1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs1655564 -- 1,616,731(-) gagtt(C/T)tgaac downstream-variant-500B
rs2228266 -- 1,614,772(+) TTTTC(C/T)AAAGA nc-transcript-variant
rs6970313 -- 1,614,510(+) GGGTC(A/G)CAGGC nc-transcript-variant
rs6975322 -- 1,612,646(+) tCAGT(G/T)AGGCC upstream-variant-2KB
rs6975335 -- 1,612,680(+) gctcc(G/T)ggcag upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TFAMP1 Gene

Variant ID Type Subtype PubMed ID
dgv2045e1 CNV Complex 17122850
dgv7093n71 CNV Loss 21882294
nsv830879 CNV Gain+Loss 17160897
nsv830880 CNV Loss 17160897
nsv887224 CNV Loss 21882294
nsv887233 CNV Loss 21882294
dgv7103n71 CNV Loss 21882294
dgv7104n71 CNV Loss 21882294
dgv7105n71 CNV Loss 21882294
nsv887241 CNV Loss 21882294
nsv464248 CNV Gain 19166990

Relevant External Links for TFAMP1 Gene

HapMap Linkage Disequilibrium report
TFAMP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TFAMP1 Gene

Disorders for TFAMP1 Gene

No disorders were found for TFAMP1 Gene.

No data available for UniProtKB/Swiss-Prot for TFAMP1 Gene

Publications for TFAMP1 Gene

  1. Similarity of human mitochondrial transcription factor 1 to high mobility group proteins. (PMID: 2035027) Parisi M.A. … Clayton D.A. (Science 1991) 3
  2. Smaller isoform of human mitochondrial transcription factor 1: its wide distribution and production by alternative splicing. (PMID: 8333869) Tominaga K. … Ohta S. (Biochem. Biophys. Res. Commun. 1993) 3
  3. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E. … Simpson A.J.G. (Proc. Natl. Acad. Sci. U.S.A. 2000) 3
  4. Human mitochondrial transcription factor A (mtTFA): gene structure and characterization of related pseudogenes. (PMID: 12095695) Reyes A. … Gadaleta G. (Gene 2002) 3

Products for TFAMP1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TFAMP1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TFAMP1
    • Block miRNA regulation of TFAMP1 using miScript Target Protectors

    Sources for TFAMP1 Gene

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