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Aliases for TEX47 Gene

Aliases for TEX47 Gene

  • Testis Expressed 47 2 3 5
  • C7orf62 3 4
  • Chromosome 7 Open Reading Frame 62 2
  • Uncharacterized Protein C7orf62 3
  • Testis-Expressed Protein 47 3

External Ids for TEX47 Gene

Previous HGNC Symbols for TEX47 Gene

  • C7orf62

Summaries for TEX47 Gene

GeneCards Summary for TEX47 Gene

TEX47 (Testis Expressed 47) is a Protein Coding gene.

Additional gene information for TEX47 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX47 Gene

Genomics for TEX47 Gene

Regulatory Elements for TEX47 Gene

Enhancers for TEX47 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07H088311 0.7 ENCODE dbSUPER 9.2 +483.6 483584 1 STAT1 HNF4A NR2F2 TEX47 SRI STEAP4 PIR57969
GH07H088314 0.7 FANTOM5 9.2 +481.4 481412 0.3 PKNOX1 IKZF1 ELF1 ATF7 IKZF2 SPI1 NR2F2 TEX47 STEAP4 PIR57969
GH07H088347 0.4 ENCODE 10.2 +448.5 448473 0.2 IKZF1 HNF4A EIF4A1P13 ENSG00000207094 TEX47 SRI PIR57969 STEAP4
GH07H088634 0.4 ENCODE 9.9 +160.5 160505 0.8 POU5F1 EZH2 TEX47 EEF1A1P28 PQLC1P1
GH07H088964 0.4 ENCODE 9.8 -169.5 -169504 1 CEBPB CEBPG TEX47 GC07M088936 PIR57028
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX47 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TEX47 Gene

Genomic Locations for TEX47 Gene
chr7:88,794,106-88,795,773
(GRCh38/hg38)
Size:
1,668 bases
Orientation:
Minus strand
chr7:88,423,420-88,425,035
(GRCh37/hg19)

Genomic View for TEX47 Gene

Genes around TEX47 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX47 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX47 Gene

Proteins for TEX47 Gene

  • Protein details for TEX47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TBZ9-TEX47_HUMAN
    Recommended name:
    Testis-expressed protein 47
    Protein Accession:
    Q8TBZ9

    Protein attributes for TEX47 Gene

    Size:
    253 amino acids
    Molecular mass:
    29483 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX47 Gene

Post-translational modifications for TEX47 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX47 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX47 Gene

Domains & Families for TEX47 Gene

Gene Families for TEX47 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TEX47 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX47: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX47 Gene

Function for TEX47 Gene

genes like me logo Genes that share phenotypes with TEX47: view

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX47 Gene

Localization for TEX47 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEX47 gene
Compartment Confidence
mitochondrion 3
nucleus 2
cytosol 2
peroxisome 1
golgi apparatus 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (1)
  • Nucleoplasm (1)
See all subcellular structures

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TEX47 Gene

Pathways & Interactions for TEX47 Gene

SuperPathways for TEX47 Gene

No Data Available

Interacting Proteins for TEX47 Gene

Gene Ontology (GO) - Biological Process for TEX47 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX47 Gene

Drugs & Compounds for TEX47 Gene

No Compound Related Data Available

Transcripts for TEX47 Gene

mRNA/cDNA for TEX47 Gene

(2) REFSEQ mRNAs :
(21) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX47 Gene

No ASD Table

Relevant External Links for TEX47 Gene

GeneLoc Exon Structure for
TEX47
ECgene alternative splicing isoforms for
TEX47

Expression for TEX47 Gene

NURSA nuclear receptor signaling pathways regulating expression of TEX47 Gene:

TEX47

mRNA Expression by UniProt/SwissProt for TEX47 Gene:

Q8TBZ9-TEX47_HUMAN
Tissue specificity: Testis-specific.

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX47 Gene

Orthologs for TEX47 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX47 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C7H7orf62 33
  • 99.21 (n)
C7orf62 34
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia C14H7orf62 33
  • 82.08 (n)
C7orf62 34
  • 75 (a)
OneToOne
cow
(Bos Taurus)
Mammalia C4H7orf62 33 34
  • 81.61 (n)
mouse
(Mus musculus)
Mammalia 4921511H03Rik 33 34
  • 75.63 (n)
Tex47 16
rat
(Rattus norvegicus)
Mammalia RGD1564345 33
  • 74.97 (n)
oppossum
(Monodelphis domestica)
Mammalia C7orf62 34
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C7orf62 34
  • 51 (a)
OneToOne
chicken
(Gallus gallus)
Aves C7orf62 34
  • 33 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 34
  • 39 (a)
OneToMany
-- 34
  • 34 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC100497111 33
  • 46.7 (n)
zebrafish
(Danio rerio)
Actinopterygii LOC100006770 33
  • 44.91 (n)
C7orf62 34
  • 27 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 28 (a)
OneToOne
Species where no ortholog for TEX47 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TEX47 Gene

ENSEMBL:
Gene Tree for TEX47 (if available)
TreeFam:
Gene Tree for TEX47 (if available)

Paralogs for TEX47 Gene

No data available for Paralogs for TEX47 Gene

Variants for TEX47 Gene

Sequence variations from dbSNP and Humsavar for TEX47 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000098216 -- 88,794,124(+) GTTTT(C/T)TTTAT intron-variant, utr-variant-3-prime
rs1000102440 -- 88,796,415(+) CACTT(G/T)ATCAC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001491728 -- 88,799,719(+) TCAGG(A/T)GCTTA intron-variant, upstream-variant-2KB
rs1001614532 -- 88,796,713(+) TCTCG(A/C)TCTAC intron-variant, upstream-variant-2KB, utr-variant-5-prime
rs1001643379 -- 88,793,711(+) CATAT(C/T)GTAAC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TEX47 Gene

Variant ID Type Subtype PubMed ID
nsv515995 CNV gain+loss 19592680
nsv464626 CNV gain 19166990
nsv1015471 CNV gain 25217958
esv3576401 CNV gain 25503493
esv3576400 CNV gain 25503493
esv2764019 CNV loss 21179565
esv2752188 CNV gain 17911159
esv2752187 CNV gain 17911159
dgv6526n100 CNV gain 25217958
dgv6525n100 CNV gain 25217958
dgv11493n54 CNV gain 21841781

Variation tolerance for TEX47 Gene

Residual Variation Intolerance Score: 69.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.82; 73.82% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX47 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX47

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX47 Gene

Disorders for TEX47 Gene

Relevant External Links for TEX47

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX47
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX47

No disorders were found for TEX47 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX47 Gene

Publications for TEX47 Gene

  1. Human chromosome 7: DNA sequence and biology. (PMID: 12690205) Scherer SW … Tsui LC (Science (New York, N.Y.) 2003) 2 3 4 60
  2. Novel associations for hypothyroidism include known autoimmune risk loci. (PMID: 22493691) Eriksson N … Do CB (PloS one 2012) 3 60
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P … Vidal M (Genomics 2007) 3 60
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 4 60
  5. The DNA sequence of human chromosome 7. (PMID: 12853948) Hillier LW … Wilson RK (Nature 2003) 4 60

Products for TEX47 Gene

Sources for TEX47 Gene

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