Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TEX46 Gene

Aliases for TEX46 Gene

  • Testis Expressed 46 2 3
  • C1orf234 3 4 5
  • Chromosome 1 Open Reading Frame 234 2 5
  • Uncharacterized Protein C1orf234 3
  • TEX# 3

External Ids for TEX46 Gene

Previous HGNC Symbols for TEX46 Gene

  • C1orf234
  • TEX#

Summaries for TEX46 Gene

GeneCards Summary for TEX46 Gene

TEX46 (Testis Expressed 46) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX46 Gene

Genomics for TEX46 Gene

Regulatory Elements for TEX46 Gene

Enhancers for TEX46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G023184 1 Ensembl ENCODE 10.2 -168.9 -168932 0.5 CTCF RB1 ZNF2 RAD21 ZNF101 ZFHX2 EGR1 SMC3 ZNF143 MIXL1 RNU6-514P RNU6-135P KDM1A TEX46 LACTBL1 LUZP1 HTR1D
GH01G022153 0.4 dbSUPER 4.7 +861.8 861828 1.7 ZFHX2 EGR2 TEX46 HSPG2 LOC105376850 WNT4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX46 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX46 Gene

Chromosome:
1
Start:
23,010,834 bp from pter
End:
23,015,850 bp from pter
Size:
5,017 bases
Orientation:
Minus strand

Genomic View for TEX46 Gene

Genes around TEX46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX46 Gene

Proteins for TEX46 Gene

  • Protein details for TEX46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    H3BTG2-CA234_HUMAN
    Recommended name:
    Uncharacterized protein C1orf234
    Protein Accession:
    H3BTG2
    Secondary Accessions:
    • H3BR39

    Protein attributes for TEX46 Gene

    Size:
    121 amino acids
    Molecular mass:
    14053 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BX377446; Type=Frameshift; Positions=11; Evidence={ECO:0000305};

    Alternative splice isoforms for TEX46 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TEX46 Gene

Post-translational modifications for TEX46 Gene

No Post-translational modifications

Other Protein References for TEX46 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX46 Gene

Domains & Families for TEX46 Gene

Protein Domains for TEX46 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX46: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX46 Gene

Function for TEX46 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX46 Gene

Localization for TEX46 Gene

Gene Ontology (GO) - Cellular Components for TEX46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX46: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TEX46 Gene

Pathways & Interactions for TEX46 Gene

SuperPathways for TEX46 Gene

No Data Available

Interacting Proteins for TEX46 Gene

Gene Ontology (GO) - Biological Process for TEX46 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX46 Gene

Transcripts for TEX46 Gene

mRNA/cDNA for TEX46 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX46 Gene

No ASD Table

Relevant External Links for TEX46 Gene

GeneLoc Exon Structure for
TEX46
ECgene alternative splicing isoforms for
TEX46

Expression for TEX46 Gene

NURSA nuclear receptor signaling pathways regulating expression of TEX46 Gene:

TEX46
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX46 Gene

Orthologs for TEX46 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX46 Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia 4930549C01Rik 34 35
  • 73.89 (n)
Tex46 16
rat
(Rattus norvegicus)
Mammalia LOC102552669 34
  • 70 (n)
dog
(Canis familiaris)
Mammalia C1orf234 35
  • 54 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia C1orf234 35
  • 31 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia C1orf234 35
  • 30 (a)
OneToOne
Species where no ortholog for TEX46 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX46 Gene

ENSEMBL:
Gene Tree for TEX46 (if available)
TreeFam:
Gene Tree for TEX46 (if available)

Paralogs for TEX46 Gene

No data available for Paralogs for TEX46 Gene

Variants for TEX46 Gene

Sequence variations from dbSNP and Humsavar for TEX46 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000442140 -- 23,012,220(+) CACCT(A/G)TAGTC intron-variant
rs1000786323 -- 23,017,353(+) GCCTC(C/G/T)GAGTA upstream-variant-2KB
rs1001405265 -- 23,014,832(+) TATTA(C/T)TTTAT intron-variant
rs1001454249 -- 23,011,220(+) AGCAC(C/G)AGGAA intron-variant
rs1002314490 -- 23,017,713(+) CTCGG(C/T)GGGGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TEX46 Gene

Variant ID Type Subtype PubMed ID
nsv819213 CNV loss 19587683

Relevant External Links for TEX46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TEX46 Gene

Disorders for TEX46 Gene

Relevant External Links for TEX46

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX46

No disorders were found for TEX46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX46 Gene

Publications for TEX46 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for TEX46 Gene

Sources for TEX46 Gene

Content
Loading form....