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Aliases for TEX43 Gene

Aliases for TEX43 Gene

  • Testis Expressed 43 2 3 5
  • Testis Specific Expressed Gene 7 2 3
  • C5orf48 3 4
  • Chromosome 5 Open Reading Frame 48 2
  • Tseg7 3

External Ids for TEX43 Gene

Previous HGNC Symbols for TEX43 Gene

  • C5orf48

Previous GeneCards Identifiers for TEX43 Gene

  • GC05P125969

Summaries for TEX43 Gene

GeneCards Summary for TEX43 Gene

TEX43 (Testis Expressed 43) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX43 Gene

Genomics for TEX43 Gene

Regulatory Elements for TEX43 Gene

Enhancers for TEX43 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TEX43 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX43 Gene

Chromosome:
5
Start:
126,631,722 bp from pter
End:
126,636,287 bp from pter
Size:
4,566 bases
Orientation:
Plus strand

Genomic View for TEX43 Gene

Genes around TEX43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX43 Gene

Proteins for TEX43 Gene

  • Protein details for TEX43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZNM6-TEX43_HUMAN
    Recommended name:
    Testis-expressed sequence 43 protein
    Protein Accession:
    Q6ZNM6

    Protein attributes for TEX43 Gene

    Size:
    134 amino acids
    Molecular mass:
    15452 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX43 Gene

Proteomics data for TEX43 Gene at MOPED

Post-translational modifications for TEX43 Gene

No Post-translational modifications

Other Protein References for TEX43 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX43 Gene

Domains & Families for TEX43 Gene

Protein Domains for TEX43 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX43: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX43 Gene

Function for TEX43 Gene

Phenotypes for TEX43 Gene

genes like me logo Genes that share phenotypes with TEX43: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX43 Gene

Localization for TEX43 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TEX43 Gene

Pathways & Interactions for TEX43 Gene

SuperPathways for TEX43 Gene

No Data Available

Interacting Proteins for TEX43 Gene

Gene Ontology (GO) - Biological Process for TEX43 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX43 Gene

Drugs & Compounds for TEX43 Gene

No Compound Related Data Available

Transcripts for TEX43 Gene

mRNA/cDNA for TEX43 Gene

(1) REFSEQ mRNAs :
(10) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX43 Gene

No ASD Table

Relevant External Links for TEX43 Gene

GeneLoc Exon Structure for
TEX43
ECgene alternative splicing isoforms for
TEX43

Expression for TEX43 Gene

mRNA expression in normal human tissues for TEX43 Gene

mRNA differential expression in normal tissues according to GTEx for TEX43 Gene

This gene is overexpressed in Testis (x46.7).
genes like me logo Genes that share expression patterns with TEX43: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TEX43 Gene

Orthologs for TEX43 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX43 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TEX43 35
  • 90.23 (n)
  • 87.97 (a)
C7H5orf48 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX43 35
  • 90.05 (n)
  • 86.57 (a)
C5orf48 36
  • 77 (a)
OneToOne
mouse
(Mus musculus)
Mammalia 1700065I17Rik 35
  • 78.61 (n)
  • 75.37 (a)
Tex43 16
1700065I17Rik 36
  • 72 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TEX43 35
  • 99.75 (n)
  • 100 (a)
C5orf48 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia RGD1561039 35
  • 78.46 (n)
  • 76.92 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 52 (a)
OneToMany
-- 36
  • 55 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia C5orf48 36
  • 45 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 35 (a)
OneToOne
Species with no ortholog for TEX43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX43 Gene

ENSEMBL:
Gene Tree for TEX43 (if available)
TreeFam:
Gene Tree for TEX43 (if available)

Paralogs for TEX43 Gene

No data available for Paralogs for TEX43 Gene

Variants for TEX43 Gene

Sequence variations from dbSNP and Humsavar for TEX43 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs6862980 -- 126,631,712(+) ATGAG(A/T)ATTCC upstream-variant-2KB
rs7721342 -- 126,631,389(+) AAGGG(A/G)GATTT upstream-variant-2KB
rs12654569 -- 126,636,590(+) CTTCA(A/G)TGTCA downstream-variant-500B
rs6887295 -- 126,632,609(+) TATGT(C/T)ATGCC reference, synonymous-codon
rs12655861 -- 126,631,961(+) TGCAG(A/G)GAAAG intron-variant

Variation tolerance for TEX43 Gene

Residual Variation Intolerance Score: 53.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.35; 7.64% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for TEX43 Gene

Disorders for TEX43 Gene

Relevant External Links for TEX43

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX43

No disorders were found for TEX43 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX43 Gene

Publications for TEX43 Gene

  1. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4 67
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TEX43 Gene

Sources for TEX43 Gene

Content