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Aliases for TEX43 Gene

Aliases for TEX43 Gene

  • Testis Expressed 43 2 3
  • Testis Specific Expressed Gene 7 2 3
  • C5orf48 3 4
  • Testis-Expressed Sequence 43 Protein 3
  • Chromosome 5 Open Reading Frame 48 2
  • Tseg7 3

External Ids for TEX43 Gene

Previous Symbols for TEX43 Gene

  • C5orf48

Summaries for TEX43 Gene

GeneCards Summary for TEX43 Gene

TEX43 (Testis Expressed 43) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX43 Gene

Genomics for TEX43 Gene

Genomic Location for TEX43 Gene

Start:
126,631,722 bp from pter
End:
126,636,287 bp from pter
Size:
4,566 bases
Orientation:
Plus strand

Genomic View for TEX43 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX43 Gene

No data available for Regulatory Elements for TEX43 Gene

Proteins for TEX43 Gene

  • Protein details for TEX43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZNM6-TEX43_HUMAN
    Recommended name:
    Testis-expressed sequence 43 protein
    Protein Accession:
    Q6ZNM6
    Secondary Accessions:

    Protein attributes for TEX43 Gene

    Size:
    134 amino acids
    Molecular mass:
    15452 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX43 Gene

Proteomics data for TEX43 Gene at MOPED

Post-translational modifications for TEX43 Gene

No Post-translational modifications

Other Protein References for TEX43 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX43 Gene

Domains for TEX43 Gene

Protein Domains for TEX43 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with TEX43: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TEX43 Gene

Function for TEX43 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TEX43 Gene

Localization for TEX43 Gene

No data available for Gene Ontology (GO) - Cellular Components for TEX43 Gene

Pathways for TEX43 Gene

SuperPathways for TEX43 Gene

No Data Available

Interacting Proteins for TEX43 Gene

Gene Ontology (GO) - Biological Process for TEX43 Gene

None

No data available for Pathways by source for TEX43 Gene

Transcripts for TEX43 Gene

mRNA/cDNA for TEX43 Gene

(1) REFSEQ mRNAs :
(10) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX43 Gene

No ASD Table

Relevant External Links for TEX43 Gene

GeneLoc Exon Structure for
TEX43
ECgene alternative splicing isoforms for
TEX43

Expression for TEX43 Gene

mRNA expression in normal human tissues for TEX43 Gene

mRNA differential expression in normal tissues according to GTEx for TEX43 Gene

This gene is overexpressed in Testis (46.7).
genes like me logo Genes that share expressions with TEX43: view

Orthologs for TEX43 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX43 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C5orf48 37
  • 100 (a)
OneToOne
TEX43 36
  • 99.75 (n)
  • 100 (a)
cow
(Bos Taurus)
Mammalia C7H5orf48 37
  • 88 (a)
OneToOne
TEX43 36
  • 90.23 (n)
  • 87.97 (a)
dog
(Canis familiaris)
Mammalia C5orf48 37
  • 77 (a)
OneToOne
TEX43 36
  • 90.05 (n)
  • 86.57 (a)
mouse
(Mus musculus)
Mammalia 1700065I17Rik 36
  • 78.61 (n)
  • 75.37 (a)
1700065I17Rik 16
1700065I17Rik 37
  • 72 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 37
  • 52 (a)
OneToMany
-- 37
  • 55 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia RGD1561039 36
  • 78.46 (n)
  • 76.92 (a)
lizard
(Anolis carolinensis)
Reptilia C5orf48 37
  • 45 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 35 (a)
OneToOne
Species with no ortholog for TEX43:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX43 Gene

ENSEMBL:
Gene Tree for TEX43 (if available)
TreeFam:
Gene Tree for TEX43 (if available)

Paralogs for TEX43 Gene

No data available for Paralogs for TEX43 Gene

Variants for TEX43 Gene

Sequence variations from dbSNP and Humsavar for TEX43 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type MAF
rs6862980 -- 126,631,712(+) ATGAG(A/T)ATTCC upstream-variant-2KB
rs6887295 -- 126,632,609(+) TATGT(C/T)ATGCC reference, synonymous-codon
rs6887803 -- 126,632,918(+) AGAGG(C/T)AGAGG intron-variant
rs6893933 -- 126,634,090(+) ttcta(A/G)gtata intron-variant
rs7705714 -- 126,636,007(+) TGATA(C/T)ACAGA intron-variant

Relevant External Links for TEX43 Gene

HapMap Linkage Disequilibrium report
TEX43

No data available for Structural Variations from Database of Genomic Variants (DGV) for TEX43 Gene

Disorders for TEX43 Gene

No disorders were found for TEX43 Gene.

No data available for UniProtKB/Swiss-Prot for TEX43 Gene

Publications for TEX43 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  3. The DNA sequence and comparative analysis of human chromosome 5. (PMID: 15372022) Schmutz J. … Rubin E.M. (Nature 2004) 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for TEX43 Gene

Sources for TEX43 Gene

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