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Aliases for TEX41 Gene

Subcategory (RNA class) for TEX41 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TEX41 Gene

  • Testis Expressed 41 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 953 2 3
  • DKFZp686O1327 3
  • LINC00953 3

External Ids for TEX41 Gene

Previous GeneCards Identifiers for TEX41 Gene

  • GC02P145430

Summaries for TEX41 Gene

GeneCards Summary for TEX41 Gene

TEX41 (Testis Expressed 41 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX41 Gene

Genomics for TEX41 Gene

Regulatory Elements for TEX41 Gene

Enhancers for TEX41 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F145065 2.2 Ensembl ENCODE 4.6 +398.9 398917 2.6 TBP ELF3 ATF1 DMAP1 RAD21 THRB ZSCAN9 DNMT3B ZBTB40 RARA ZEB2 TEX41 LOC100505498 GC02P145300
GH02F144659 1.6 FANTOM5 Ensembl ENCODE 4.4 -7.3 -7278 2.9 HDAC1 ATF1 PKNOX1 CBX3 CREB3L1 NFRKB CHAMP1 GATA2 FOS CREM ZEB2 TEX41 GTDC1 GC02P144567
GH02F145035 0.8 FANTOM5 Ensembl ENCODE 4.3 +369.1 369095 3.4 TEX41 LOC100505498 GC02P145300
GH02F144669 0.9 FANTOM5 Ensembl 0.8 +1.9 1934 1.0 SMARCA4 GLIS1 CEBPA CEBPB PRDM10 CEBPG ZEB2 GTDC1 TEX41 GC02P144679
GH02F144662 0.9 FANTOM5 Ensembl 0.8 -4.5 -4545 0.9 BCOR IKZF1 ZMYM3 ZEB2 TEX41 GC02P144567
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX41 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX41 Gene

Chromosome:
2
Start:
144,667,967 bp from pter
End:
145,262,988 bp from pter
Size:
595,022 bases
Orientation:
Plus strand

Genomic View for TEX41 Gene

Genes around TEX41 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX41 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX41 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX41 Gene

Proteins for TEX41 Gene

Post-translational modifications for TEX41 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TEX41 Gene

Domains & Families for TEX41 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX41 Gene

Function for TEX41 Gene

Phenotypes for TEX41 Gene

genes like me logo Genes that share phenotypes with TEX41: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX41 Gene

Localization for TEX41 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TEX41 Gene

Pathways & Interactions for TEX41 Gene

SuperPathways for TEX41 Gene

No Data Available

Interacting Proteins for TEX41 Gene

Gene Ontology (GO) - Biological Process for TEX41 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX41 Gene

Transcripts for TEX41 Gene

mRNA/cDNA for TEX41 Gene

(5) Selected AceView cDNA sequences:
(103) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TEX41 Gene

No ASD Table

Relevant External Links for TEX41 Gene

GeneLoc Exon Structure for
TEX41
ECgene alternative splicing isoforms for
TEX41

Expression for TEX41 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TEX41 Gene

mRNA differential expression in normal tissues according to GTEx for TEX41 Gene

This gene is overexpressed in Testis (x5.8).

NURSA nuclear receptor signaling pathways regulating expression of TEX41 Gene:

TEX41
genes like me logo Genes that share expression patterns with TEX41: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TEX41 Gene

Orthologs for TEX41 Gene

Evolution for TEX41 Gene

ENSEMBL:
Gene Tree for TEX41 (if available)
TreeFam:
Gene Tree for TEX41 (if available)

No data available for Orthologs for TEX41 Gene

Paralogs for TEX41 Gene

No data available for Paralogs for TEX41 Gene

Variants for TEX41 Gene

Sequence variations from dbSNP and Humsavar for TEX41 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs1004716 -- 145,036,573(+) TAGTT(C/T)ATAGT intron-variant
rs1006923 -- 145,017,832(+) AGTGG(C/T)TTGGG intron-variant
rs10164782 -- 144,980,387(+) tttaa(A/G)agatg intron-variant
rs10168164 -- 144,931,501(+) tgtta(C/T)atatt intron-variant
rs10173755 -- 144,711,452(+) AACAT(C/G)ACAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TEX41 Gene

Variant ID Type Subtype PubMed ID
nsv979132 CNV duplication 23825009
nsv834398 CNV loss 17160897
nsv834397 CNV gain 17160897
nsv478451 CNV novel sequence insertion 20440878
nsv477848 CNV novel sequence insertion 20440878
nsv472675 CNV novel sequence insertion 20440878
nsv1138854 CNV deletion 24896259
nsv1110353 CNV duplication 24896259
esv7732 OTHER inversion 19470904
esv3592785 CNV loss 21293372
esv3592784 CNV loss 21293372
esv3592782 CNV loss 21293372
esv3592781 CNV loss 21293372
esv3592780 CNV loss 21293372
esv3592779 CNV loss 21293372
esv3592778 CNV loss 21293372
esv3446558 CNV insertion 20981092
esv2720924 CNV deletion 23290073
esv2720923 CNV deletion 23290073
esv27024 CNV loss 19812545
esv2676997 CNV deletion 23128226
esv2675091 CNV deletion 23128226
esv2669763 CNV deletion 23128226
esv2660268 CNV deletion 23128226
esv2027100 CNV deletion 18987734
esv1921476 CNV deletion 18987734

Relevant External Links for TEX41 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX41

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TEX41 Gene

Disorders for TEX41 Gene

Relevant External Links for TEX41

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX41

No disorders were found for TEX41 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX41 Gene

Publications for TEX41 Gene

  1. Variation at the NFATC2 locus increases the risk of thiazolidinedione-induced edema in the Diabetes REduction Assessment with ramipril and rosiglitazone Medication (DREAM) study. (PMID: 20628086) Bailey S.D. … Anand S. (Diabetes Care 2010) 3 64
  2. Gene-centric association signals for lipids and apolipoproteins identified via the HumanCVD BeadChip. (PMID: 19913121) Talmud P.J. … . (Am. J. Hum. Genet. 2009) 3 64
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TEX41 Gene

Sources for TEX41 Gene

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