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Aliases for TEX40 Gene

Aliases for TEX40 Gene

  • Testis Expressed 40 2 3
  • C11orf20 3 4
  • Testis-Expressed Sequence 40 Protein 3
  • Chromosome 11 Open Reading Frame 20 2

External Ids for TEX40 Gene

Previous HGNC Symbols for TEX40 Gene

  • C11orf20

Previous GeneCards Identifiers for TEX40 Gene

  • GC11P064069

Summaries for TEX40 Gene

GeneCards Summary for TEX40 Gene

TEX40 (Testis Expressed 40) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TEX40 Gene

  • May be involved in late spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX40 Gene

Genomics for TEX40 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TEX40 Gene

Start:
64,300,391 bp from pter
End:
64,304,770 bp from pter
Size:
4,380 bases
Orientation:
Plus strand

Genomic View for TEX40 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX40 Gene

No data available for Regulatory Elements for TEX40 Gene

Proteins for TEX40 Gene

  • Protein details for TEX40 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NTU4-TEX40_HUMAN
    Recommended name:
    Testis-expressed sequence 40 protein
    Protein Accession:
    Q9NTU4
    Secondary Accessions:

    Protein attributes for TEX40 Gene

    Size:
    200 amino acids
    Molecular mass:
    22839 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX40 Gene

Proteomics data for TEX40 Gene at MOPED

Post-translational modifications for TEX40 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX40 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX40 Gene

Domains for TEX40 Gene

Protein Domains for TEX40 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX40: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX40 Gene

Function for TEX40 Gene

Molecular function for TEX40 Gene

UniProtKB/Swiss-Prot Function: May be involved in late spermatogenesis.

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TEX40 Gene

Localization for TEX40 Gene

Gene Ontology (GO) - Cellular Components for TEX40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with TEX40: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for TEX40 Gene

Pathways for TEX40 Gene

SuperPathways for TEX40 Gene

No Data Available

Interacting Proteins for TEX40 Gene

Gene Ontology (GO) - Biological Process for TEX40 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007140 male meiosis ISS --
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with TEX40: view

No data available for Pathways by source for TEX40 Gene

Transcripts for TEX40 Gene

mRNA/cDNA for TEX40 Gene

(1) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX40 Gene

Testis expressed 40:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX40

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TEX40
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX40 Gene

No ASD Table

Relevant External Links for TEX40 Gene

GeneLoc Exon Structure for
TEX40
ECgene alternative splicing isoforms for
TEX40

Expression for TEX40 Gene

mRNA expression in normal human tissues for TEX40 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX40 Gene

This gene is overexpressed in Testis (47.3).

SOURCE GeneReport for Unigene cluster for TEX40 Gene Hs.97174

genes like me logo Genes that share expressions with TEX40: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for TEX40 Gene

Orthologs for TEX40 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX40 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX40 35
  • 99.5 (n)
  • 99 (a)
TEX40 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TEX40 35
  • 71.6 (n)
  • 56.63 (a)
dog
(Canis familiaris)
Mammalia TEX40 35
  • 77.15 (n)
  • 63.92 (a)
mouse
(Mus musculus)
Mammalia Tex40 35
  • 65.43 (n)
  • 51.06 (a)
Tex40 16
Tex40 36
  • 47 (a)
OneToOne
Species with no ortholog for TEX40:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX40 Gene

ENSEMBL:
Gene Tree for TEX40 (if available)
TreeFam:
Gene Tree for TEX40 (if available)

Paralogs for TEX40 Gene

No data available for Paralogs for TEX40 Gene

Variants for TEX40 Gene

Sequence variations from dbSNP and Humsavar for TEX40 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs523461 -- 64,303,310(-) cccac(C/T)cacat intron-variant
rs605827 -- 64,302,666(+) CTCCC(C/T)GGTTC intron-variant
rs1320688 -- 64,301,284(+) tgttt(C/T)gtttg intron-variant
rs2286614 - 64,300,838(-) GCCCC(A/G)GGCTG reference, missense
rs3016145 -- 64,302,655(-) gcgga(A/G)gttgc intron-variant

Relevant External Links for TEX40 Gene

HapMap Linkage Disequilibrium report
TEX40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEX40 Gene

Disorders for TEX40 Gene

No disorders were found for TEX40 Gene.

No data available for UniProtKB/Swiss-Prot for TEX40 Gene

Publications for TEX40 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  2. Systematic subcellular localization of novel proteins identified by large-scale cDNA sequencing. (PMID: 11256614) Simpson J.C. … Wiemann S. (EMBO Rep. 2000) 3
  3. From ORFeome to biology: a functional genomics pipeline. (PMID: 15489336) Wiemann S. … Poustka A. (Genome Res. 2004) 3
  4. The LIFEdb database in 2006. (PMID: 16381901) Mehrle A. … Wiemann S. (Nucleic Acids Res. 2006) 3
  5. ESRRA-C11orf20 is a recurrent gene fusion in serous ovarian carcinoma. (PMID: 21949640) Salzman J. … Brown P.O. (PLoS Biol. 2011) 3

Products for TEX40 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TEX40
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TEX40
    • Block miRNA regulation of TEX40 using miScript Target Protectors

    Sources for TEX40 Gene

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