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Aliases for TEX38 Gene

Aliases for TEX38 Gene

  • Testis Expressed 38 2 3
  • ATPAF1 Antisense RNA 1 2 3 4
  • Testis Highly Expressed Protein 4 2 3
  • ATPAF1 Antisense Gene Protein 1 3 4
  • ATPAF1-AS1 3 4
  • C1orf223 3 4
  • ATPAF1 Antisense RNA 1 (Non-Protein Coding) 2
  • Testis-Expressed Sequence 38 Protein 3
  • Chromosome 1 Open Reading Frame 223 2
  • THEG4 3

External Ids for TEX38 Gene

Previous Symbols for TEX38 Gene

  • C1orf223
  • ATPAF1-AS1

Summaries for TEX38 Gene

GeneCards Summary for TEX38 Gene

TEX38 (Testis Expressed 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX38 Gene

Genomics for TEX38 Gene

Genomic Location for TEX38 Gene

Start:
46,668,855 bp from pter
End:
46,673,594 bp from pter
Size:
4,740 bases
Orientation:
Plus strand

Genomic View for TEX38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX38 Gene

No data available for Regulatory Elements for TEX38 Gene

Proteins for TEX38 Gene

  • Protein details for TEX38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PEX7-TEX38_HUMAN
    Recommended name:
    Testis-expressed sequence 38 protein
    Protein Accession:
    Q6PEX7
    Secondary Accessions:
    • A1A4F8

    Protein attributes for TEX38 Gene

    Size:
    206 amino acids
    Molecular mass:
    23280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH57818.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI26319.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TEX38 Gene

Proteomics data for TEX38 Gene at MOPED

Post-translational modifications for TEX38 Gene

No Post-translational modifications

Other Protein References for TEX38 Gene

No data available for DME Specific Peptides for TEX38 Gene

Domains for TEX38 Gene

Protein Domains for TEX38 Gene

ProtoNet:
genes like me logo Genes that share domains with TEX38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TEX38 Gene

Function for TEX38 Gene

Phenotypes for TEX38 Gene

GenomeRNAi human phenotypes for TEX38:
genes like me logo Genes that share phenotypes with TEX38: view

miRNA for TEX38 Gene

miRTarBase miRNAs that target TEX38

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for TEX38 Gene

Localization for TEX38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX38 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX38: view

Pathways for TEX38 Gene

SuperPathways for TEX38 Gene

No Data Available

Interacting Proteins for TEX38 Gene

Gene Ontology (GO) - Biological Process for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0098779 activation of mitophagy in response to mitochondrial depolarization IMP 22020285
genes like me logo Genes that share ontologies with TEX38: view

No data available for Pathways by source for TEX38 Gene

Transcripts for TEX38 Gene

mRNA/cDNA for TEX38 Gene

Unigene Clusters for TEX38 Gene

Testis expressed 38:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TEX38 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c
SP1:
SP2: -

Relevant External Links for TEX38 Gene

GeneLoc Exon Structure for
TEX38
ECgene alternative splicing isoforms for
TEX38

Expression for TEX38 Gene

mRNA expression in normal human tissues for TEX38 Gene

mRNA differential expression in normal tissues according to GTEx for TEX38 Gene

This gene is overexpressed in Testis (46.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TEX38 Gene

SOURCE GeneReport for Unigene cluster for TEX38 Gene Hs.443299

genes like me logo Genes that share expressions with TEX38: view

Orthologs for TEX38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX38 36
  • 98.06 (n)
  • 95.15 (a)
cow
(Bos Taurus)
Mammalia ATPAF1-AS1 36
  • 85.92 (n)
  • 77.18 (a)
TEX38 37
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX38 36
  • 84.14 (n)
  • 76.21 (a)
TEX38 37
  • 49 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tex38 36
  • 79.73 (n)
  • 70.1 (a)
Tex38 16
Tex38 37
  • 68 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TEX38 37
  • 56 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tex38 36
  • 79.73 (n)
  • 71.65 (a)
Species with no ortholog for TEX38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX38 Gene

ENSEMBL:
Gene Tree for TEX38 (if available)
TreeFam:
Gene Tree for TEX38 (if available)

Paralogs for TEX38 Gene

Selected SIMAP similar genes for TEX38 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TEX38: view

No data available for Paralogs for TEX38 Gene

Variants for TEX38 Gene

Sequence variations from dbSNP and Humsavar for TEX38 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs594891 -- 46,671,753(+) CCACT(G/T)CACAA upstream-variant-2KB
rs1767602 -- 46,671,844(-) AGCCA(A/G)TCAGA utr-variant-5-prime, upstream-variant-2KB
rs12118483 -- 46,670,551(+) tgtca(C/G)tgtat upstream-variant-2KB
rs12742306 -- 46,671,552(+) CATCA(A/C)CCGTT upstream-variant-2KB
rs12746356 -- 46,671,508(+) TGCTG(G/T)GTGTT upstream-variant-2KB

Relevant External Links for TEX38 Gene

HapMap Linkage Disequilibrium report
TEX38

No data available for Structural Variations from Database of Genomic Variants (DGV) for TEX38 Gene

Disorders for TEX38 Gene

No disorders were found for TEX38 Gene.

No data available for UniProtKB/Swiss-Prot for TEX38 Gene

Publications for TEX38 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for TEX38 Gene

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat
  • QIAGEN qRT-PCR Assays for microRNAs that regulate TEX38
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TEX38
    • Block miRNA regulation of TEX38 using miScript Target Protectors

    Sources for TEX38 Gene

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