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Aliases for TEX38 Gene

Aliases for TEX38 Gene

  • Testis Expressed 38 2 3 5
  • ATPAF1 Antisense RNA 1 2 3 4
  • Testis Highly Expressed Protein 4 2 3
  • ATPAF1 Antisense Gene Protein 1 3 4
  • ATPAF1-AS1 3 4
  • C1orf223 3 4
  • ATPAF1 Antisense RNA 1 (Non-Protein Coding) 2
  • Testis-Expressed Sequence 38 Protein 3
  • Chromosome 1 Open Reading Frame 223 2
  • THEG4 3

External Ids for TEX38 Gene

Previous HGNC Symbols for TEX38 Gene

  • C1orf223
  • ATPAF1-AS1

Previous GeneCards Identifiers for TEX38 Gene

  • GC01P047134

Summaries for TEX38 Gene

GeneCards Summary for TEX38 Gene

TEX38 (Testis Expressed 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX38 Gene

Genomics for TEX38 Gene

Regulatory Elements for TEX38 Gene

Enhancers for TEX38 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F046621 1.2 Ensembl ENCODE 10.9 -46.3 -46300 1.2 CTCF ZNF654 JUN KLF17 REST ZIC2 RAD21 SCRT2 IKZF1 SMC3 MKNK1 EFCAB14 TEX38 ATPAF1 EFCAB14-AS1 LOC105378697 MOB3C
GH01F046603 0.2 ENCODE 10.8 -64.5 -64486 2.7 HDGF ATF1 ARID4B SIN3A DMAP1 ZNF48 YY1 ZNF121 SLC30A9 GLIS2 MKNK1 EFCAB14 TEX38 ATPAF1 EFCAB14-AS1 GC01P046604 KNCN
GH01F046717 0.4 ENCODE 10.8 +49.9 49930 3.3 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF143 EFCAB14 EFCAB14-AS1 NSUN4 TEX38 CYP4B1 NENFP1 ATPAF1 PIR52630 LOC105378698
GH01F046441 0.5 ENCODE 10.7 -226.2 -226197 1.5 HDGF PKNOX1 ARNT CREB3L1 ZFP64 FEZF1 ZNF2 ZNF143 KLF13 ZNF263 NSUN4 TEX38 PRDX1 LINC01398 FAAHP1
GH01F046594 1 Ensembl ENCODE 10.4 -73.7 -73749 2.2 SMARCA5 SCRT1 PKNOX1 ATF1 MAX ZBTB40 JUND ZNF318 SCRT2 IKZF1 MKNK1 MOB3C EFCAB14 TEX38 ATPAF1 EFCAB14-AS1 GC01P046604 KNCN
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TEX38 on UCSC Golden Path with GeneCards custom track

Promoters for TEX38 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000076967 -555 1401 SIN3A ZNF48 ZNF2 YY1 ZNF143 ZNF263 SP3 REST ZNF610 MXD3
ENSR00001744592 -1655 401 ZNF146 ATF1 ZNF280D ATF3 ZFP37

Genomic Location for TEX38 Gene

Chromosome:
1
Start:
46,668,855 bp from pter
End:
46,673,594 bp from pter
Size:
4,740 bases
Orientation:
Plus strand

Genomic View for TEX38 Gene

Genes around TEX38 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX38 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX38 Gene

Proteins for TEX38 Gene

  • Protein details for TEX38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6PEX7-TEX38_HUMAN
    Recommended name:
    Testis-expressed sequence 38 protein
    Protein Accession:
    Q6PEX7
    Secondary Accessions:
    • A1A4F8

    Protein attributes for TEX38 Gene

    Size:
    206 amino acids
    Molecular mass:
    23280 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH57818.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI26319.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TEX38 Gene

Post-translational modifications for TEX38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX38 Gene

No data available for DME Specific Peptides for TEX38 Gene

Domains & Families for TEX38 Gene

Protein Domains for TEX38 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX38 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX38: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TEX38 Gene

Function for TEX38 Gene

genes like me logo Genes that share phenotypes with TEX38: view

Animal Model Products

miRNA for TEX38 Gene

miRTarBase miRNAs that target TEX38

Inhibitory RNA Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX38 Gene

Localization for TEX38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX38 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX38: view

No data available for Subcellular locations from COMPARTMENTS for TEX38 Gene

Pathways & Interactions for TEX38 Gene

SuperPathways for TEX38 Gene

No Data Available

Interacting Proteins for TEX38 Gene

Gene Ontology (GO) - Biological Process for TEX38 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX38 Gene

Transcripts for TEX38 Gene

mRNA/cDNA for TEX38 Gene

Unigene Clusters for TEX38 Gene

Testis expressed 38:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX38 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c
SP1:
SP2: -

Relevant External Links for TEX38 Gene

GeneLoc Exon Structure for
TEX38
ECgene alternative splicing isoforms for
TEX38

Expression for TEX38 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TEX38 Gene

mRNA differential expression in normal tissues according to GTEx for TEX38 Gene

This gene is overexpressed in Testis (x46.9).

Protein differential expression in normal tissues from HIPED for TEX38 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TEX38 Gene



Protein tissue co-expression partners for TEX38 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TEX38 Gene:

TEX38

SOURCE GeneReport for Unigene cluster for TEX38 Gene:

Hs.443299
genes like me logo Genes that share expression patterns with TEX38: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TEX38 Gene

Orthologs for TEX38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX38 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX38 34
  • 98.06 (n)
cow
(Bos Taurus)
Mammalia ATPAF1-AS1 34
  • 85.92 (n)
TEX38 35
  • 73 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX38 34 35
  • 84.14 (n)
mouse
(Mus musculus)
Mammalia Tex38 34 16 35
  • 79.73 (n)
rat
(Rattus norvegicus)
Mammalia Tex38 34
  • 79.73 (n)
oppossum
(Monodelphis domestica)
Mammalia TEX38 35
  • 56 (a)
OneToOne
Species where no ortholog for TEX38 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX38 Gene

ENSEMBL:
Gene Tree for TEX38 (if available)
TreeFam:
Gene Tree for TEX38 (if available)

Paralogs for TEX38 Gene

(2) SIMAP similar genes for TEX38 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TEX38: view

No data available for Paralogs for TEX38 Gene

Variants for TEX38 Gene

Sequence variations from dbSNP and Humsavar for TEX38 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1025806 -- 46,673,431(-) GCTTG(A/G)CATTG upstream-variant-2KB, reference, missense
rs11211337 -- 46,668,139(-) CCGAC(A/G)GCAGC upstream-variant-2KB, reference, missense
rs11211338 -- 46,669,910(+) gactt(C/T)gattt intron-variant, upstream-variant-2KB
rs112496056 -- 46,671,578(+) ACATC(C/T)GTAAG intron-variant, upstream-variant-2KB
rs112802475 -- 46,669,703(+) AGAGA(C/G)ATAGA intron-variant, upstream-variant-2KB

Variation tolerance for TEX38 Gene

Gene Damage Index Score: 8.88; 87.04% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX38 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX38

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEX38 Gene

Disorders for TEX38 Gene

Relevant External Links for TEX38

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX38

No disorders were found for TEX38 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX38 Gene

Publications for TEX38 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3 64
  3. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64

Products for TEX38 Gene

Sources for TEX38 Gene

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