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Aliases for TEX38 Gene

Aliases for TEX38 Gene

  • Testis Expressed 38 2 3
  • ATPAF1 Antisense RNA 1 2 3 4
  • Testis Highly Expressed Protein 4 2 3
  • ATPAF1 Antisense Gene Protein 1 3 4
  • ATPAF1-AS1 3 4
  • C1orf223 3 4
  • ATPAF1 Antisense RNA 1 (Non-Protein Coding) 2
  • Testis-Expressed Sequence 38 Protein 3
  • Chromosome 1 Open Reading Frame 223 2
  • THEG4 3

External Ids for TEX38 Gene

Previous HGNC Symbols for TEX38 Gene

  • C1orf223
  • ATPAF1-AS1

Previous GeneCards Identifiers for TEX38 Gene

  • GC01P047134

Summaries for TEX38 Gene

GeneCards Summary for TEX38 Gene

TEX38 (Testis Expressed 38) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX38 Gene

Genomics for TEX38 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TEX38 Gene

46,668,855 bp from pter
46,673,594 bp from pter
4,740 bases
Plus strand

Genomic View for TEX38 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX38 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX38 Gene

No data available for Regulatory Elements for TEX38 Gene

Proteins for TEX38 Gene

  • Protein details for TEX38 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Testis-expressed sequence 38 protein
    Protein Accession:
    Secondary Accessions:
    • A1A4F8

    Protein attributes for TEX38 Gene

    206 amino acids
    Molecular mass:
    23280 Da
    Quaternary structure:
    No Data Available
    • Sequence=AAH57818.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305}; Sequence=AAI26319.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for TEX38 Gene

Proteomics data for TEX38 Gene at MOPED

Post-translational modifications for TEX38 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX38 Gene

No data available for DME Specific Peptides for TEX38 Gene

Domains for TEX38 Gene

Protein Domains for TEX38 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX38: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX38 Gene

Function for TEX38 Gene

Phenotypes for TEX38 Gene

GenomeRNAi human phenotypes for TEX38:
genes like me logo Genes that share phenotypes with TEX38: view

Animal Model Products

CRISPR Products

miRNA for TEX38 Gene

miRTarBase miRNAs that target TEX38

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX38

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for TEX38 Gene

Localization for TEX38 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX38 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX38: view

No data available for Subcellular locations from COMPARTMENTS for TEX38 Gene

Pathways for TEX38 Gene

SuperPathways for TEX38 Gene

No Data Available

Interacting Proteins for TEX38 Gene

Gene Ontology (GO) - Biological Process for TEX38 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0098779 activation of mitophagy in response to mitochondrial depolarization IMP 22020285
genes like me logo Genes that share ontologies with TEX38: view

No data available for Pathways by source for TEX38 Gene

Transcripts for TEX38 Gene

mRNA/cDNA for TEX38 Gene

Unigene Clusters for TEX38 Gene

Testis expressed 38:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX38

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TEX38
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX38 Gene

ExUns: 1a · 1b ^ 2a · 2b · 2c
SP2: -

Relevant External Links for TEX38 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TEX38 Gene

mRNA expression in normal human tissues for TEX38 Gene

mRNA differential expression in normal tissues according to GTEx for TEX38 Gene

This gene is overexpressed in Testis (46.9).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TEX38 Gene

SOURCE GeneReport for Unigene cluster for TEX38 Gene Hs.443299

genes like me logo Genes that share expressions with TEX38: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TEX38 Gene

Orthologs for TEX38 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX38 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia TEX38 35
  • 98.06 (n)
  • 95.15 (a)
(Bos Taurus)
Mammalia ATPAF1-AS1 35
  • 85.92 (n)
  • 77.18 (a)
TEX38 36
  • 73 (a)
(Canis familiaris)
Mammalia TEX38 35
  • 84.14 (n)
  • 76.21 (a)
TEX38 36
  • 49 (a)
(Mus musculus)
Mammalia Tex38 35
  • 79.73 (n)
  • 70.1 (a)
Tex38 16
Tex38 36
  • 68 (a)
(Monodelphis domestica)
Mammalia TEX38 36
  • 56 (a)
(Rattus norvegicus)
Mammalia Tex38 35
  • 79.73 (n)
  • 71.65 (a)
Species with no ortholog for TEX38:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX38 Gene

Gene Tree for TEX38 (if available)
Gene Tree for TEX38 (if available)

Paralogs for TEX38 Gene

Selected SIMAP similar genes for TEX38 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TEX38: view

No data available for Paralogs for TEX38 Gene

Variants for TEX38 Gene

Sequence variations from dbSNP and Humsavar for TEX38 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs594891 -- 46,671,753(+) CCACT(G/T)CACAA upstream-variant-2KB
rs1767602 -- 46,671,844(-) AGCCA(A/G)TCAGA utr-variant-5-prime, upstream-variant-2KB
rs12118483 -- 46,670,551(+) tgtca(C/G)tgtat upstream-variant-2KB
rs12742306 -- 46,671,552(+) CATCA(A/C)CCGTT upstream-variant-2KB
rs12746356 -- 46,671,508(+) TGCTG(G/T)GTGTT upstream-variant-2KB

Relevant External Links for TEX38 Gene

HapMap Linkage Disequilibrium report

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEX38 Gene

Disorders for TEX38 Gene

No disorders were found for TEX38 Gene.

No data available for UniProtKB/Swiss-Prot for TEX38 Gene

Publications for TEX38 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Image-based genome-wide siRNA screen identifies selective autophagy factors. (PMID: 22020285) Orvedahl A. … Levine B. (Nature 2011) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for TEX38 Gene

Sources for TEX38 Gene

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