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Aliases for TEX30 Gene

Aliases for TEX30 Gene

  • Testis Expressed 30 2 3 5
  • C13orf27 3 4
  • Testis-Expressed Sequence 30 Protein 3
  • Chromosome 13 Open Reading Frame 27 2
  • Testis-Expressed Protein 30 3

External Ids for TEX30 Gene

Previous HGNC Symbols for TEX30 Gene

  • C13orf27

Previous GeneCards Identifiers for TEX30 Gene

  • GC13M103419

Summaries for TEX30 Gene

GeneCards Summary for TEX30 Gene

TEX30 (Testis Expressed 30) is a Protein Coding gene. Diseases associated with TEX30 include Rectal Neoplasm. GO annotations related to this gene include hydrolase activity.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX30 Gene

Genomics for TEX30 Gene

Regulatory Elements for TEX30 Gene

Enhancers for TEX30 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G102844 1.4 ENCODE dbSUPER 11.4 -72.7 -72679 3.9 HDGF PKNOX1 CREB3L1 AGO1 ZFP64 WRNIP1 ARID4B SIN3A DMAP1 ZNF2 BIVM TEX30 METTL21EP CCDC168 LINC00283 ERCC5 METTL21C GC13M102871
GH13G102830 1.1 ENCODE dbSUPER 11.2 -57.2 -57184 1.2 ELF3 FOXA2 MLX ARID4B DMAP1 ZNF48 RAD21 RARA MIXL1 THAP11 BIVM ERCC5 TEX30 LINC00283 GC13P102835 RNY5P8
GH13G102812 0.7 Ensembl ENCODE 11.2 -39.0 -39025 0.3 ZNF600 ZFX TEX30 LINC00283 CCDC168 METTL21EP RNY5P8 GC13M102806
GH13G102840 0.4 dbSUPER 11.4 -67.1 -67136 0.7 ZNF133 ERCC5 TEX30 BIVM CCDC168 LINC00283 METTL21C METTL21EP PIR34791
GH13G102772 1 ENCODE 0.7 +0.1 120 2.6 HDGF ATF1 CREB3L1 SIN3A GLI4 YY1 ZNF766 GLIS2 CBX5 ZNF207 METTL21EP TEX30 PIR36999
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX30 on UCSC Golden Path with GeneCards custom track

Promoters for TEX30 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000065342 321 1401 HDGF ATF1 CREB3L1 SIN3A GLI4 YY1 ZNF766 GLIS2 CBX5 ZNF207

Genomic Location for TEX30 Gene

Chromosome:
13
Start:
102,765,888 bp from pter
End:
102,773,821 bp from pter
Size:
7,934 bases
Orientation:
Minus strand

Genomic View for TEX30 Gene

Genes around TEX30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX30 Gene

Proteins for TEX30 Gene

  • Protein details for TEX30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JUR7-TEX30_HUMAN
    Recommended name:
    Testis-expressed protein 30
    Protein Accession:
    Q5JUR7
    Secondary Accessions:
    • Q5JUR8
    • Q96KZ8

    Protein attributes for TEX30 Gene

    Size:
    227 amino acids
    Molecular mass:
    25585 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH15148.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TEX30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TEX30 Gene

Post-translational modifications for TEX30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TEX30 Gene

Domains & Families for TEX30 Gene

Protein Domains for TEX30 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX30: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX30 Gene

Function for TEX30 Gene

Gene Ontology (GO) - Molecular Function for TEX30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with TEX30: view
genes like me logo Genes that share phenotypes with TEX30: view

Animal Model Products

CRISPR Products

miRNA for TEX30 Gene

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX30 Gene

Localization for TEX30 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEX30 gene
Compartment Confidence
extracellular 2
plasma membrane 1
mitochondrion 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TEX30 Gene

Pathways & Interactions for TEX30 Gene

SuperPathways for TEX30 Gene

No Data Available

Interacting Proteins for TEX30 Gene

Selected Interacting proteins: Q5JUR7-TEX30_HUMAN for TEX30 Gene via IID

Symbol External ID(s) Details
IPO5

Gene Ontology (GO) - Biological Process for TEX30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX30 Gene

Drugs & Compounds for TEX30 Gene

No Compound Related Data Available

Transcripts for TEX30 Gene

Unigene Clusters for TEX30 Gene

Testis expressed 30:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX30 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5:
SP6: - - - -

Relevant External Links for TEX30 Gene

GeneLoc Exon Structure for
TEX30
ECgene alternative splicing isoforms for
TEX30

Expression for TEX30 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX30 Gene

This gene is overexpressed in Testis (x10.5).

Protein differential expression in normal tissues from HIPED for TEX30 Gene

This gene is overexpressed in Testis (25.9), Ovary (22.0), and Monocytes (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for TEX30 Gene



Protein tissue co-expression partners for TEX30 Gene

NURSA nuclear receptor signaling pathways regulating expression of TEX30 Gene:

TEX30

SOURCE GeneReport for Unigene cluster for TEX30 Gene:

Hs.398111

Evidence on tissue expression from TISSUES for TEX30 Gene

  • Nervous system(2.4)
genes like me logo Genes that share expression patterns with TEX30: view

Primer Products

No data available for mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX30 Gene

Orthologs for TEX30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX30 34 35
  • 100 (n)
dog
(Canis familiaris)
Mammalia TEX30 34 35
  • 95.7 (n)
cow
(Bos Taurus)
Mammalia TEX30 34 35
  • 94.94 (n)
rat
(Rattus norvegicus)
Mammalia Tex30 34
  • 94.13 (n)
mouse
(Mus musculus)
Mammalia Tex30 34 16 35
  • 94.07 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 71 (a)
OneToMany
-- 35
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves C1H13ORF27 34 35
  • 73.12 (n)
lizard
(Anolis carolinensis)
Reptilia TEX30 35
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tex30 34
  • 67.04 (n)
zebrafish
(Danio rerio)
Actinopterygii tex30 34 35
  • 54.34 (n)
Species where no ortholog for TEX30 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TEX30 Gene

ENSEMBL:
Gene Tree for TEX30 (if available)
TreeFam:
Gene Tree for TEX30 (if available)

Paralogs for TEX30 Gene

No data available for Paralogs for TEX30 Gene

Variants for TEX30 Gene

Sequence variations from dbSNP and Humsavar for TEX30 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000266447 -- 102,770,253(+) TAGAG(A/G)GCCAG intron-variant, upstream-variant-2KB
rs1000355133 -- 102,766,906(+) GCTAA(C/T)ATTTA intron-variant
rs1000379584 -- 102,766,647(+) CTCTC(C/T)CCTGC intron-variant
rs1000576046 -- 102,773,873(+) CAGCC(A/C)GCCAC upstream-variant-2KB
rs1000871524 -- 102,768,746(+) CTGTG(C/T)TGTGC intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TEX30 Gene

Variant ID Type Subtype PubMed ID
nsv1048497 CNV gain 25217958

Variation tolerance for TEX30 Gene

Residual Variation Intolerance Score: 71.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.92; 19.11% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX30 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX30 Gene

Disorders for TEX30 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TEX30 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
rectal neoplasm
  • neoplasm of rectum
- elite association - COSMIC cancer census association via MalaCards
Search TEX30 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TEX30

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX30
genes like me logo Genes that share disorders with TEX30: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TEX30 Gene

Publications for TEX30 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64
  4. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for TEX30 Gene

Sources for TEX30 Gene

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