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Aliases for TEX30 Gene

Aliases for TEX30 Gene

  • Testis Expressed 30 2 3 5
  • C13orf27 3 4
  • Chromosome 13 Open Reading Frame 27 2

External Ids for TEX30 Gene

Previous HGNC Symbols for TEX30 Gene

  • C13orf27

Previous GeneCards Identifiers for TEX30 Gene

  • GC13M103419

Summaries for TEX30 Gene

GeneCards Summary for TEX30 Gene

TEX30 (Testis Expressed 30) is a Protein Coding gene. Diseases associated with TEX30 include Rectal Neoplasm. GO annotations related to this gene include hydrolase activity.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX30 Gene

Genomics for TEX30 Gene

Regulatory Elements for TEX30 Gene

Enhancers for TEX30 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around TEX30 on UCSC Golden Path with GeneCards custom track

Promoters for TEX30 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TEX30 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX30 Gene

Chromosome:
13
Start:
102,765,888 bp from pter
End:
102,773,821 bp from pter
Size:
7,934 bases
Orientation:
Minus strand

Genomic View for TEX30 Gene

Genes around TEX30 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX30 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX30 Gene

Proteins for TEX30 Gene

  • Protein details for TEX30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JUR7-TEX30_HUMAN
    Recommended name:
    Testis-expressed sequence 30 protein
    Protein Accession:
    Q5JUR7
    Secondary Accessions:
    • Q5JUR8
    • Q96KZ8

    Protein attributes for TEX30 Gene

    Size:
    227 amino acids
    Molecular mass:
    25585 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH15148.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TEX30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TEX30 Gene

Proteomics data for TEX30 Gene at MOPED

Post-translational modifications for TEX30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TEX30 Gene

Domains & Families for TEX30 Gene

Protein Domains for TEX30 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX30: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX30 Gene

Function for TEX30 Gene

genes like me logo Genes that share phenotypes with TEX30: view

Animal Model Products

CRISPR Products

miRNA for TEX30 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX30 Gene

Localization for TEX30 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TEX30 Gene COMPARTMENTS Subcellular localization image for TEX30 gene
Compartment Confidence
nucleus 3
extracellular 2
cytosol 1
mitochondrion 1
peroxisome 1
plasma membrane 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TEX30 Gene

Pathways & Interactions for TEX30 Gene

SuperPathways for TEX30 Gene

No Data Available

Interacting Proteins for TEX30 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000365200%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000250495%0d%0a
Selected Interacting proteins: ENSP00000365200 for TEX30 Gene via STRING

Gene Ontology (GO) - Biological Process for TEX30 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX30 Gene

Drugs & Compounds for TEX30 Gene

No Compound Related Data Available

Transcripts for TEX30 Gene

Unigene Clusters for TEX30 Gene

Testis expressed 30:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TEX30 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5:
SP6: - - - -

Relevant External Links for TEX30 Gene

GeneLoc Exon Structure for
TEX30
ECgene alternative splicing isoforms for
TEX30

Expression for TEX30 Gene

mRNA expression in normal human tissues for TEX30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX30 Gene

This gene is overexpressed in Testis (x10.5).

Protein differential expression in normal tissues from HIPED for TEX30 Gene

This gene is overexpressed in Testis (25.9), Ovary (22.0), and Monocytes (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for TEX30 Gene



SOURCE GeneReport for Unigene cluster for TEX30 Gene Hs.398111

genes like me logo Genes that share expression patterns with TEX30: view

Protein tissue co-expression partners for TEX30 Gene

Primer Products

No data available for mRNA Expression by UniProt/SwissProt for TEX30 Gene

Orthologs for TEX30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX30 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TEX30 35
  • 94.94 (n)
  • 96.43 (a)
TEX30 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX30 35
  • 95.7 (n)
  • 97.78 (a)
TEX30 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tex30 35
  • 94.07 (n)
  • 96 (a)
Tex30 16
Tex30 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TEX30 35
  • 100 (n)
  • 100 (a)
TEX30 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tex30 35
  • 94.13 (n)
  • 95.59 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
chicken
(Gallus gallus)
Aves C1H13ORF27 35
  • 73.12 (n)
  • 68.47 (a)
C1H13ORF27 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TEX30 36
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tex30 35
  • 67.04 (n)
  • 60.34 (a)
zebrafish
(Danio rerio)
Actinopterygii tex30 35
  • 54.34 (n)
  • 46.92 (a)
tex30 36
  • 40 (a)
OneToOne
Species with no ortholog for TEX30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TEX30 Gene

ENSEMBL:
Gene Tree for TEX30 (if available)
TreeFam:
Gene Tree for TEX30 (if available)

Paralogs for TEX30 Gene

No data available for Paralogs for TEX30 Gene

Variants for TEX30 Gene

Sequence variations from dbSNP and Humsavar for TEX30 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs2274388 -- 102,773,337(-) AGCCC(C/T)GGCAG intron-variant, upstream-variant-2KB
rs7489745 -- 102,770,576(+) CTtgg(C/T)tacgt intron-variant, upstream-variant-2KB
rs7995465 -- 102,771,981(+) GTTTT(A/G)GAGCC intron-variant, upstream-variant-2KB
rs9300761 -- 102,772,894(+) GGCTT(C/T)AGGTT intron-variant, upstream-variant-2KB
rs9514053 -- 102,772,271(+) TTGAG(G/T)AGGTG intron-variant, upstream-variant-2KB

Variation tolerance for TEX30 Gene

Residual Variation Intolerance Score: 71.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.92; 19.11% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Relevant External Links for TEX30 Gene

Disorders for TEX30 Gene

MalaCards: The human disease database

(1) MalaCards diseases for TEX30 Gene - From: DISEASES

Disorder Aliases PubMed IDs
rectal neoplasm
  • neoplasm of rectum
- elite association - COSMIC cancer census association via MalaCards
Search TEX30 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TEX30

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX30
genes like me logo Genes that share disorders with TEX30: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TEX30 Gene

Publications for TEX30 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 67
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TEX30 Gene

Sources for TEX30 Gene

Content