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Aliases for TEX30 Gene

Aliases for TEX30 Gene

  • Testis Expressed 30 2 3
  • C13orf27 3 4
  • Testis-Expressed Sequence 30 Protein 3
  • Chromosome 13 Open Reading Frame 27 2

External Ids for TEX30 Gene

Previous HGNC Symbols for TEX30 Gene

  • C13orf27

Previous GeneCards Identifiers for TEX30 Gene

  • GC13M103419

Summaries for TEX30 Gene

GeneCards Summary for TEX30 Gene

TEX30 (Testis Expressed 30) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX30 Gene

Genomics for TEX30 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TEX30 Gene

Start:
102,765,888 bp from pter
End:
102,773,821 bp from pter
Size:
7,934 bases
Orientation:
Minus strand

Genomic View for TEX30 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX30 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX30 Gene

No data available for Regulatory Elements for TEX30 Gene

Proteins for TEX30 Gene

  • Protein details for TEX30 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JUR7-TEX30_HUMAN
    Recommended name:
    Testis-expressed sequence 30 protein
    Protein Accession:
    Q5JUR7
    Secondary Accessions:
    • Q5JUR8
    • Q96KZ8

    Protein attributes for TEX30 Gene

    Size:
    227 amino acids
    Molecular mass:
    25585 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH15148.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TEX30 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TEX30 Gene

Proteomics data for TEX30 Gene at MOPED

Post-translational modifications for TEX30 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for TEX30 Gene

Domains for TEX30 Gene

Protein Domains for TEX30 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX30: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX30 Gene

Function for TEX30 Gene

Gene Ontology (GO) - Molecular Function for TEX30 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016787 hydrolase activity --
genes like me logo Genes that share ontologies with TEX30: view

Phenotypes for TEX30 Gene

GenomeRNAi human phenotypes for TEX30:
genes like me logo Genes that share phenotypes with TEX30: view

Animal Model Products

CRISPR Products

miRNA for TEX30 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX30

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TEX30 Gene

Localization for TEX30 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TEX30 Gene

Pathways for TEX30 Gene

SuperPathways for TEX30 Gene

No Data Available

Interacting Proteins for TEX30 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000365200%0d%0a9606.ENSP00000344818%0d%0a9606.ENSP00000250495%0d%0a
Selected Interacting proteins: ENSP00000365200 for TEX30 Gene via STRING

Gene Ontology (GO) - Biological Process for TEX30 Gene

None

No data available for Pathways by source for TEX30 Gene

Transcripts for TEX30 Gene

Unigene Clusters for TEX30 Gene

Testis expressed 30:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX30

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TEX30
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX30 Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d
SP1: -
SP2: - -
SP3: - -
SP4: - - -
SP5:
SP6: - - - -

Relevant External Links for TEX30 Gene

GeneLoc Exon Structure for
TEX30
ECgene alternative splicing isoforms for
TEX30

Expression for TEX30 Gene

mRNA expression in normal human tissues for TEX30 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX30 Gene

This gene is overexpressed in Testis (10.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TEX30 Gene

SOURCE GeneReport for Unigene cluster for TEX30 Gene Hs.398111

genes like me logo Genes that share expressions with TEX30: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for TEX30 Gene

Orthologs for TEX30 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEX30 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX30 35
  • 100 (n)
  • 100 (a)
TEX30 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TEX30 35
  • 94.94 (n)
  • 96.43 (a)
TEX30 36
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TEX30 35
  • 95.7 (n)
  • 97.78 (a)
TEX30 36
  • 98 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tex30 35
  • 94.07 (n)
  • 96 (a)
Tex30 16
Tex30 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 71 (a)
OneToMany
-- 36
  • 63 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tex30 35
  • 94.13 (n)
  • 95.59 (a)
chicken
(Gallus gallus)
Aves C1H13ORF27 35
  • 73.12 (n)
  • 68.47 (a)
C1H13ORF27 36
  • 68 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TEX30 36
  • 58 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tex30 35
  • 67.04 (n)
  • 60.34 (a)
zebrafish
(Danio rerio)
Actinopterygii tex30 35
  • 54.34 (n)
  • 46.92 (a)
tex30 36
  • 40 (a)
OneToOne
Species with no ortholog for TEX30:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TEX30 Gene

ENSEMBL:
Gene Tree for TEX30 (if available)
TreeFam:
Gene Tree for TEX30 (if available)

Paralogs for TEX30 Gene

No data available for Paralogs for TEX30 Gene

Variants for TEX30 Gene

Sequence variations from dbSNP and Humsavar for TEX30 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type MAF
rs7963 -- 102,766,216(-) ACAGT(C/T)GTATA utr-variant-3-prime, nc-transcript-variant
rs8054 -- 102,766,378(-) TTGAG(C/T)ACACA utr-variant-3-prime, nc-transcript-variant
rs1470654 -- 102,768,330(+) AAAAT(A/C)ATCAG intron-variant
rs2274388 -- 102,773,337(-) AGCCC(C/T)GGCAG intron-variant
rs2893115 -- 102,767,643(+) cacgg(G/T)ggctc intron-variant

Relevant External Links for TEX30 Gene

HapMap Linkage Disequilibrium report
TEX30

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEX30 Gene

Disorders for TEX30 Gene

No disorders were found for TEX30 Gene.

No data available for UniProtKB/Swiss-Prot for TEX30 Gene

Publications for TEX30 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  4. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  5. Identification of new mechanisms of cellular response to chemotherapy by tracking changes in post-translational modifications by ubiquitin and ubiquitin-like proteins. (PMID: 24654937) Bonacci T. … Soubeyran P. (J. Proteome Res. 2014) 3

Products for TEX30 Gene

Sources for TEX30 Gene

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