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Aliases for TEX29 Gene

Aliases for TEX29 Gene

  • Testis Expressed 29 2 3 5
  • C13orf16 3 4
  • Testis-Expressed Sequence 29 Protein 3
  • Chromosome 13 Open Reading Frame 16 2
  • Testis-Expressed Protein 29 3
  • BA474D23.1 3

External Ids for TEX29 Gene

Previous HGNC Symbols for TEX29 Gene

  • C13orf16

Previous GeneCards Identifiers for TEX29 Gene

  • GC13P111969

Summaries for TEX29 Gene

GeneCards Summary for TEX29 Gene

TEX29 (Testis Expressed 29) is a Protein Coding gene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX29 Gene

Genomics for TEX29 Gene

Regulatory Elements for TEX29 Gene

Enhancers for TEX29 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13G110971 0.7 FANTOM5 dbSUPER 48.1 -344.5 -344491 0.1 GLIS1 TEX29 ING1 LOC105370364 GC13P110984
GH13G111278 0.9 Ensembl ENCODE 16.4 -35.3 -35257 4.9 ZNF263 ZNF280D BHLHE40 SCRT2 FOS HNF4A MAFK NFE2L2 ARHGEF7 TEX29 GC13P111283 SALL4P4
GH13G111209 1.2 Ensembl ENCODE dbSUPER 10.6 -104.9 -104888 4.0 ATF1 ZNF133 TEAD4 RBBP5 CEBPG ZIC2 FOS HLF CEBPB ATF2 ARHGEF7 TEX29 ANKRD10 SALL4P4 GC13P111283
GH13G111238 0.7 dbSUPER 16.4 -75.0 -74991 4.5 SCRT1 MXI1 ZNF680 L3MBTL2 SUZ12 RBBP5 MNT EP300 ZIC2 RAD21 ARHGEF7 TEX29 ARHGEF7-AS2 ANKRD10 GC13P111283 SALL4P4
GH13G111384 1.7 VISTA ENCODE 5.5 +69.1 69121 0.8 MXI1 EP300 TEX29 LOC105370365 GC13M111529
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX29 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX29 Gene

Chromosome:
13
Start:
111,316,184 bp from pter
End:
111,344,249 bp from pter
Size:
28,066 bases
Orientation:
Plus strand

Genomic View for TEX29 Gene

Genes around TEX29 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX29 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX29 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX29 Gene

Proteins for TEX29 Gene

  • Protein details for TEX29 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N6K0-TEX29_HUMAN
    Recommended name:
    Testis-expressed protein 29
    Protein Accession:
    Q8N6K0

    Protein attributes for TEX29 Gene

    Size:
    151 amino acids
    Molecular mass:
    16649 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX29 Gene

Post-translational modifications for TEX29 Gene

No Post-translational modifications

Other Protein References for TEX29 Gene

No data available for DME Specific Peptides for TEX29 Gene

Domains & Families for TEX29 Gene

Protein Domains for TEX29 Gene

Blocks:
InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX29: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX29 Gene

Function for TEX29 Gene

genes like me logo Genes that share phenotypes with TEX29: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX29 Gene

Localization for TEX29 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX29 Gene

Membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEX29 gene
Compartment Confidence
plasma membrane 3
cytosol 3

Gene Ontology (GO) - Cellular Components for TEX29 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEX29: view

Pathways & Interactions for TEX29 Gene

SuperPathways for TEX29 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TEX29 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX29 Gene

Transcripts for TEX29 Gene

mRNA/cDNA for TEX29 Gene

(4) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(17) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX29 Gene

Testis expressed 29:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX29 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1: -
SP2:

Relevant External Links for TEX29 Gene

GeneLoc Exon Structure for
TEX29
ECgene alternative splicing isoforms for
TEX29

Expression for TEX29 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX29 Gene

mRNA differential expression in normal tissues according to GTEx for TEX29 Gene

This gene is overexpressed in Testis (x19.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TEX29 Gene



NURSA nuclear receptor signaling pathways regulating expression of TEX29 Gene:

TEX29

SOURCE GeneReport for Unigene cluster for TEX29 Gene:

Hs.210677

Evidence on tissue expression from TISSUES for TEX29 Gene

  • Nervous system(4)
genes like me logo Genes that share expression patterns with TEX29: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX29 Gene

Orthologs for TEX29 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX29 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX29 34 35
  • 97.13 (n)
cow
(Bos Taurus)
Mammalia TEX29 34 35
  • 69.7 (n)
dog
(Canis familiaris)
Mammalia TEX29 34
  • 68.47 (n)
C13ORF16 35
  • 61 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tex29 34
  • 65.57 (n)
oppossum
(Monodelphis domestica)
Mammalia TEX29 35
  • 46 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tex29 35
  • 37 (a)
OneToOne
Species where no ortholog for TEX29 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX29 Gene

ENSEMBL:
Gene Tree for TEX29 (if available)
TreeFam:
Gene Tree for TEX29 (if available)

Paralogs for TEX29 Gene

No data available for Paralogs for TEX29 Gene

Variants for TEX29 Gene

Sequence variations from dbSNP and Humsavar for TEX29 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000053483 -- 111,313,854(+) AATGT(A/G)ATTCC intron-variant, upstream-variant-2KB
rs1000099377 -- 111,335,292(+) ACCTG(A/C)CTCAC intron-variant
rs1000159211 -- 111,331,746(+) GCAAG(A/G)AAGGT intron-variant
rs1000233595 -- 111,310,179(+) TGGTT(A/G)GAGGA intron-variant
rs1000280741 -- 111,326,727(+) GACTG(C/T)GGGCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TEX29 Gene

Variant ID Type Subtype PubMed ID
dgv1115e59 CNV duplication 20981092
dgv120n21 CNV loss 19592680
esv1005888 CNV insertion 20482838
esv1655457 CNV insertion 17803354
esv22877 CNV loss 19812545
esv2486174 CNV deletion 19546169
esv2660741 CNV deletion 23128226
esv2748061 CNV deletion 23290073
esv2748062 CNV deletion 23290073
esv3394068 CNV duplication 20981092
esv6389 CNV gain 19470904
nsv1112264 CNV deletion 24896259
nsv1113609 CNV deletion 24896259
nsv1141495 CNV deletion 24896259
nsv1152269 CNV deletion 26484159
nsv518673 CNV gain 19592680
nsv563183 CNV loss 21841781
nsv64702 CNV insertion 16902084
nsv821529 CNV deletion 20802225
nsv951920 CNV deletion 24416366

Variation tolerance for TEX29 Gene

Residual Variation Intolerance Score: 80.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.67; 14.19% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX29 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX29

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX29 Gene

Disorders for TEX29 Gene

Relevant External Links for TEX29

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX29

No disorders were found for TEX29 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX29 Gene

Publications for TEX29 Gene

  1. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64
  4. Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. (PMID: 25231870) Perry J.R. … Ong K.K. (Nature 2014) 3 64
  5. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 64

Products for TEX29 Gene

Sources for TEX29 Gene

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