Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TEX26-AS1 Gene

Subcategory (RNA class) for TEX26-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TEX26-AS1 Gene

  • TEX26 Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 447 2 3
  • TEX26 Antisense RNA 1 (Non-Protein Coding) 2 3
  • LINC00447 3

External Ids for TEX26-AS1 Gene

Previous HGNC Symbols for TEX26-AS1 Gene

  • LINC00447

Previous GeneCards Identifiers for TEX26-AS1 Gene

  • GC13M031457

Summaries for TEX26-AS1 Gene

GeneCards Summary for TEX26-AS1 Gene

TEX26-AS1 (TEX26 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TEX26-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX26-AS1 Gene

Genomics for TEX26-AS1 Gene

GeneHancer (GH) Regulatory Elements for TEX26-AS1 Gene

Promoters and enhancers for TEX26-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH13I030932 Promoter/Enhancer 0.9 EPDnew ENCODE 550.8 +1.2 1187 0.1 CTCF SIN3A TEX26 TEX26-AS1 MEDAG
GH13I030862 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +68.8 68834 5.2 PKNOX1 ATF1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF48 YY1 TEX26 MEDAG TEX26-AS1 RXFP2 LINC00545 PIR60604
GH13I030867 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +62.4 62445 6.9 HDGF ATF1 INSM2 KLF17 ZNF2 ZEB1 GLIS2 ZNF391 FOS ATF7 TEX26 MEDAG TEX26-AS1 RXFP2 LINC00545 PIR60604
GH13I030895 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.8 +37.7 37734 1.8 JUND ZNF24 FOS ZFX ZBTB40 MEDAG TEX26 TEX26-AS1 LINC00545
GH13I030879 Enhancer 0.9 Ensembl ENCODE dbSUPER 10.5 +52.4 52441 3.8 JUND FOS ZNF48 NR2F2 LINC00545 MEDAG TEX26-AS1 TEX26 LOC105370145 PIR60604
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TEX26-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TEX26-AS1 Gene

Genomic Locations for TEX26-AS1 Gene
chr13:30,881,933-30,933,846
(GRCh38/hg38)
Size:
51,914 bases
Orientation:
Minus strand
chr13:31,456,070-31,507,983
(GRCh37/hg19)

Genomic View for TEX26-AS1 Gene

Genes around TEX26-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX26-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX26-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX26-AS1 Gene

Proteins for TEX26-AS1 Gene

Post-translational modifications for TEX26-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TEX26-AS1 Gene

Domains & Families for TEX26-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX26-AS1 Gene

Function for TEX26-AS1 Gene

Phenotypes From GWAS Catalog for TEX26-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX26-AS1 Gene

Localization for TEX26-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TEX26-AS1 Gene

Pathways & Interactions for TEX26-AS1 Gene

SuperPathways for TEX26-AS1 Gene

No Data Available

Interacting Proteins for TEX26-AS1 Gene

Gene Ontology (GO) - Biological Process for TEX26-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX26-AS1 Gene

Drugs & Compounds for TEX26-AS1 Gene

No Compound Related Data Available

Transcripts for TEX26-AS1 Gene

mRNA/cDNA for TEX26-AS1 Gene

(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX26-AS1 Gene

TEX26 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX26-AS1 Gene

No ASD Table

Relevant External Links for TEX26-AS1 Gene

GeneLoc Exon Structure for
TEX26-AS1
ECgene alternative splicing isoforms for
TEX26-AS1

Expression for TEX26-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX26-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TEX26-AS1 Gene

This gene is overexpressed in Testis (x13.8), Adipose - Visceral (Omentum) (x5.0), and Artery - Aorta (x4.1).

SOURCE GeneReport for Unigene cluster for TEX26-AS1 Gene:

Hs.654878
genes like me logo Genes that share expression patterns with TEX26-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX26-AS1 Gene

Orthologs for TEX26-AS1 Gene

Evolution for TEX26-AS1 Gene

ENSEMBL:
Gene Tree for TEX26-AS1 (if available)
TreeFam:
Gene Tree for TEX26-AS1 (if available)

No data available for Orthologs for TEX26-AS1 Gene

Paralogs for TEX26-AS1 Gene

No data available for Paralogs for TEX26-AS1 Gene

Variants for TEX26-AS1 Gene

Sequence variations from dbSNP and Humsavar for TEX26-AS1 Gene

SNP ID Clin Chr 13 pos Variation AA Info Type
rs1000023099 -- 30,893,885(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000040270 -- 30,887,673(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000087172 -- 30,917,593(-) A/C genic_downstream_transcript_variant, intron_variant
rs1000132803 -- 30,906,453(-) G/A genic_downstream_transcript_variant, intron_variant
rs1000246387 -- 30,912,304(-) G/C genic_downstream_transcript_variant, intron_variant

Additional Variant Information for TEX26-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX26-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TEX26-AS1 Gene

Disorders for TEX26-AS1 Gene

Additional Disease Information for TEX26-AS1

No disorders were found for TEX26-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX26-AS1 Gene

Publications for TEX26-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for TEX26-AS1 Gene

Sources for TEX26-AS1 Gene

Content
Loading form....