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Aliases for TEX26-AS1 Gene

Subcategory (RNA class) for TEX26-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TEX26-AS1 Gene

  • TEX26 Antisense RNA 1 2 3 5
  • Long Intergenic Non-Protein Coding RNA 447 2 3
  • TEX26 Antisense RNA 1 (Non-Protein Coding) 2 3
  • LINC00447 3

External Ids for TEX26-AS1 Gene

Previous HGNC Symbols for TEX26-AS1 Gene

  • LINC00447

Previous GeneCards Identifiers for TEX26-AS1 Gene

  • GC13M031457

Summaries for TEX26-AS1 Gene

GeneCards Summary for TEX26-AS1 Gene

TEX26-AS1 (TEX26 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TEX26-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX26-AS1 Gene

Genomics for TEX26-AS1 Gene

Regulatory Elements for TEX26-AS1 Gene

Enhancers for TEX26-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13H030867 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +62.4 62446 6 HDGF ATF1 INSM2 KLF17 RAD21 ZNF2 ZEB1 GLIS2 FOS ATF7 TEX26 MEDAG TEX26-AS1 RXFP2 LINC00545 PIR60604
GH13H030862 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.7 +68.8 68835 5 PKNOX1 ATF1 ARID4B FEZF1 DMAP1 ZNF2 YY1 ZNF143 FOS ATF7 TEX26 MEDAG TEX26-AS1 RXFP2 LINC00545 PIR60604
GH13H030895 1.1 Ensembl ENCODE dbSUPER 10.7 +37.7 37735 1 JUND FOS ZNF24 RAD21 ZFX ZBTB40 MEDAG TEX26-AS1 TEX26 LINC00545
GH13H030879 1 Ensembl ENCODE dbSUPER 10.5 +52.4 52441 3 JUND CHD1 FOS RAD21 NR2F2 MEDAG TEX26 TEX26-AS1 LOC105370145 LINC00545 PIR60604
GH13H031073 0.7 ENCODE 9.4 -140.2 -140167 0 PKNOX1 MXI1 RFX1 MAZ JUNB BMI1 BATF FOXA1 POLR2A FOS MEDAG TEX26 TEX26-AS1 WDR95P LOC105370148
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX26-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX26-AS1 Gene

Chromosome:
13
Start:
30,881,933 bp from pter
End:
30,933,846 bp from pter
Size:
51,914 bases
Orientation:
Minus strand

Genomic View for TEX26-AS1 Gene

Genes around TEX26-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX26-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX26-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX26-AS1 Gene

Proteins for TEX26-AS1 Gene

Post-translational modifications for TEX26-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TEX26-AS1 Gene

Domains & Families for TEX26-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TEX26-AS1 Gene

Function for TEX26-AS1 Gene

Phenotypes From GWAS Catalog for TEX26-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TEX26-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX26-AS1 Gene

Localization for TEX26-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TEX26-AS1 Gene

Pathways & Interactions for TEX26-AS1 Gene

SuperPathways for TEX26-AS1 Gene

No Data Available

Interacting Proteins for TEX26-AS1 Gene

Gene Ontology (GO) - Biological Process for TEX26-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX26-AS1 Gene

Drugs & Compounds for TEX26-AS1 Gene

No Compound Related Data Available

Transcripts for TEX26-AS1 Gene

mRNA/cDNA for TEX26-AS1 Gene

(4) Additional mRNA sequences :
(17) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX26-AS1 Gene

TEX26 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TEX26-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TEX26-AS1 Gene

No ASD Table

Relevant External Links for TEX26-AS1 Gene

GeneLoc Exon Structure for
TEX26-AS1
ECgene alternative splicing isoforms for
TEX26-AS1

Expression for TEX26-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX26-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TEX26-AS1 Gene

This gene is overexpressed in Testis (x13.8), Adipose - Visceral (Omentum) (x5.0), and Artery - Aorta (x4.1).

SOURCE GeneReport for Unigene cluster for TEX26-AS1 Gene:

Hs.654878
genes like me logo Genes that share expression patterns with TEX26-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX26-AS1 Gene

Orthologs for TEX26-AS1 Gene

Evolution for TEX26-AS1 Gene

ENSEMBL:
Gene Tree for TEX26-AS1 (if available)
TreeFam:
Gene Tree for TEX26-AS1 (if available)

No data available for Orthologs for TEX26-AS1 Gene

Paralogs for TEX26-AS1 Gene

No data available for Paralogs for TEX26-AS1 Gene

Variants for TEX26-AS1 Gene

Sequence variations from dbSNP and Humsavar for TEX26-AS1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs1000023099 -- 30,893,885(+) TTGGG(A/G)CCGGG intron-variant
rs1000040270 -- 30,887,673(+) CCCTG(C/T)GTCCT intron-variant
rs1000087172 -- 30,917,593(+) GGTTT(A/C)ATTGG intron-variant, upstream-variant-2KB
rs1000132803 -- 30,906,453(+) ATCAG(A/G)TGCCG intron-variant, utr-variant-5-prime
rs1000246387 -- 30,912,304(+) ACTCT(C/G)TGTAA intron-variant

Relevant External Links for TEX26-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX26-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TEX26-AS1 Gene

Disorders for TEX26-AS1 Gene

Relevant External Links for TEX26-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX26-AS1

No disorders were found for TEX26-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX26-AS1 Gene

Publications for TEX26-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 60

Products for TEX26-AS1 Gene

Sources for TEX26-AS1 Gene

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