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Aliases for TEX19 Gene

Aliases for TEX19 Gene

  • Testis Expressed 19 2 3 5

External Ids for TEX19 Gene

Previous GeneCards Identifiers for TEX19 Gene

  • GC17P077911
  • GC17P080317
  • GC17P075715

Summaries for TEX19 Gene

GeneCards Summary for TEX19 Gene

TEX19 (Testis Expressed 19) is a Protein Coding gene.

UniProtKB/Swiss-Prot for TEX19 Gene

  • Required during spermatogenesis and placenta development, probably by participating in the repression of retrotransposable elements and prevent their mobilization.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX19 Gene

Genomics for TEX19 Gene

Regulatory Elements for TEX19 Gene

Enhancers for TEX19 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17F082291 1.1 FANTOM5 ENCODE 25.5 -60.6 -60614 14.7 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 TEX19 CSNK1D ENSG00000262049 HGS SLC16A3 SECTM1 CCDC57 NPLOC4 ACTG1 MIR6787
GH17F082278 1 Ensembl ENCODE 24.7 -79.9 -79946 1.8 L3MBTL2 HLF NR4A1 MAX MNT ZIC2 MYC E2F6 MGA TEX19 SLC16A3 MIR6787 CCDC57 SECTM1 GC17P082279 CSNK1D
GH17F082356 1.4 Ensembl ENCODE 17.2 -2.2 -2189 1.3 GATAD2A CTCF ZSCAN5A ZNF146 TEAD1 SP5 ZNF266 YBX1 MBD1 ZNF580 TEX19 DCXR OGFOD3 SECTM1
GH17F082319 0.5 Ensembl ENCODE 17.1 -38.0 -38033 3.1 ZFP64 ARID4B YBX1 ZNF48 ZSCAN9 ZNF2 RAD21 RARA GLIS2 ZNF143 TEX19 ENSG00000262049 LOC105376790 OGFOD3 CD7 GC17M082322
GH17F082351 0.8 Ensembl ENCODE 16.9 -7.2 -7247 0.8 ARID4B ZNF48 ZNF2 SLC30A9 GLIS2 ZNF143 ZNF263 ZHX2 MIER2 REST TEX19 LOC105376790 SECTM1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TEX19 on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX19 Gene

Chromosome:
17
Start:
82,359,247 bp from pter
End:
82,363,776 bp from pter
Size:
4,530 bases
Orientation:
Plus strand

Genomic View for TEX19 Gene

Genes around TEX19 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX19 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX19 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX19 Gene

Proteins for TEX19 Gene

  • Protein details for TEX19 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NA77-TEX19_HUMAN
    Recommended name:
    Testis-expressed sequence 19 protein
    Protein Accession:
    Q8NA77

    Protein attributes for TEX19 Gene

    Size:
    164 amino acids
    Molecular mass:
    18469 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX19 Gene

Post-translational modifications for TEX19 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX19 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX19 Gene

Domains & Families for TEX19 Gene

Protein Domains for TEX19 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX19 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX19: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TEX19 Gene

Function for TEX19 Gene

Molecular function for TEX19 Gene

UniProtKB/Swiss-Prot Function:
Required during spermatogenesis and placenta development, probably by participating in the repression of retrotransposable elements and prevent their mobilization.
UniProtKB/Swiss-Prot Induction:
Down-regulated by gonadotropin suppression sufficient to cause marked suppression of spermatogenesis and additionally progestogen treatment.
genes like me logo Genes that share phenotypes with TEX19: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEX19 Gene

Localization for TEX19 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEX19 Gene

Cytoplasm. Note=Cytoplasmic localization is distinct from the meiotic nuage, also named P granule, a germ-cell-specific organelle required to repress transposon activity during meiosis. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TEX19 Gene COMPARTMENTS Subcellular localization image for TEX19 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 2

Gene Ontology (GO) - Cellular Components for TEX19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TEX19: view

Pathways & Interactions for TEX19 Gene

SuperPathways for TEX19 Gene

No Data Available

Interacting Proteins for TEX19 Gene

Selected Interacting proteins: Q8NA77-TEX19_HUMAN for TEX19 Gene via IID

Symbol External ID(s) Details
POU5F1

Gene Ontology (GO) - Biological Process for TEX19 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007283 spermatogenesis IEA --
GO:0030154 cell differentiation IEA --
GO:0051321 meiotic cell cycle IEA --
genes like me logo Genes that share ontologies with TEX19: view

No data available for Pathways by source and SIGNOR curated interactions for TEX19 Gene

Transcripts for TEX19 Gene

mRNA/cDNA for TEX19 Gene

Unigene Clusters for TEX19 Gene

Testis expressed 19:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX19 Gene

No ASD Table

Relevant External Links for TEX19 Gene

GeneLoc Exon Structure for
TEX19
ECgene alternative splicing isoforms for
TEX19

Expression for TEX19 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TEX19 Gene

mRNA differential expression in normal tissues according to GTEx for TEX19 Gene

This gene is overexpressed in Testis (x50.3).

NURSA nuclear receptor signaling pathways regulating expression of TEX19 Gene:

TEX19

SOURCE GeneReport for Unigene cluster for TEX19 Gene:

Hs.231897

mRNA Expression by UniProt/SwissProt for TEX19 Gene:

Q8NA77-TEX19_HUMAN
Tissue specificity: Expressed in testis. Expressed in undifferentiated embryonic stem cells.
genes like me logo Genes that share expression patterns with TEX19: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for TEX19 Gene

Orthologs for TEX19 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX19 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX19 34 35
  • 99.59 (n)
cow
(Bos Taurus)
Mammalia LOC100299732 34
  • 79.14 (n)
-- 35
  • 34 (a)
OneToMany
-- 35
  • 33 (a)
OneToMany
-- 35
  • 32 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Tex19.2 34
  • 70.3 (n)
mouse
(Mus musculus)
Mammalia Tex19.2 34 16 35
  • 70.14 (n)
Tex19.1 35
  • 24 (a)
OneToMany
Species where no ortholog for TEX19 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX19 Gene

ENSEMBL:
Gene Tree for TEX19 (if available)
TreeFam:
Gene Tree for TEX19 (if available)

Paralogs for TEX19 Gene

No data available for Paralogs for TEX19 Gene

Variants for TEX19 Gene

Sequence variations from dbSNP and Humsavar for TEX19 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs11077988 -- 82,359,291(+) GTGAG(A/G)TCTCC intron-variant, utr-variant-5-prime
rs111211187 -- 82,359,764(+) CCCAG(C/T)TTCCC intron-variant, upstream-variant-2KB
rs111211188 -- 82,359,780(+) TTCCC(C/T)CAGTT intron-variant, upstream-variant-2KB
rs111211189 -- 82,359,913(+) TTCCC(C/T)CAGTT intron-variant, upstream-variant-2KB
rs111211190 -- 82,359,917(+) CCCAG(G/T)TTCCC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TEX19 Gene

Variant ID Type Subtype PubMed ID
dgv5802n54 CNV gain 21841781
dgv5803n54 CNV gain 21841781
dgv5804n54 CNV gain+loss 21841781
esv1367803 CNV insertion 17803354
esv2162612 CNV deletion 18987734
esv21913 CNV gain+loss 19812545
esv2716489 CNV deletion 23290073
esv2716490 CNV deletion 23290073
esv2760445 CNV gain 21179565
esv2762577 CNV gain+loss 21179565
esv3641421 CNV gain 21293372
nsv1059334 CNV gain 25217958
nsv1067194 CNV gain 25217958
nsv112382 CNV deletion 16902084
nsv1132878 CNV insertion 24896259
nsv428351 CNV gain 18775914
nsv469561 CNV loss 16826518
nsv576207 CNV gain 21841781
nsv821135 CNV deletion 20802225
nsv833572 CNV loss 17160897
nsv833573 CNV loss 17160897
nsv952394 CNV deletion 24416366

Variation tolerance for TEX19 Gene

Residual Variation Intolerance Score: 74.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.14; 38.88% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX19 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX19

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX19 Gene

Disorders for TEX19 Gene

Relevant External Links for TEX19

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX19

No disorders were found for TEX19 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX19 Gene

Publications for TEX19 Gene

  1. Tex19, a mammalian-specific protein with a restricted expression in pluripotent stem cells and germ line. (PMID: 18096721) Kuntz S. … Viville S. (Stem Cells 2008) 2 3 4 64
  2. The mammalian-specific Tex19.1 gene plays an essential role in spermatogenesis and placenta-supported development. (PMID: 23674551) Tarabay Y. … Viville S. (Hum. Reprod. 2013) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The BTB and CNC homology 1 (BACH1) target genes are involved in the oxidative stress response and in control of the cell cycle. (PMID: 21555518) Warnatz H.J. … Yaspo M.L. (J. Biol. Chem. 2011) 3 64
  5. Molecular profiling of the human testis reveals stringent pathway- specific regulation of RNA expression following gonadotropin suppression and progestogen treatment. (PMID: 18160741) Bayne R.A. … Anderson R.A. (J. Androl. 2008) 4 64

Products for TEX19 Gene

Sources for TEX19 Gene

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