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Aliases for TEX13B Gene

Aliases for TEX13B Gene

  • Testis Expressed 13B 2 3 5
  • Testis Expressed Sequence 13B 2 3
  • Testis-Expressed Sequence 13B Protein 3
  • Testis-Expressed Protein 13B 3
  • TGC3B 3
  • TSGA5 3

External Ids for TEX13B Gene

Previous GeneCards Identifiers for TEX13B Gene

  • GC0XM102631
  • GC0XM104143
  • GC0XM105257
  • GC0XM105995
  • GC0XM107030
  • GC0XM107110
  • GC0XM107224
  • GC0XM096847

Summaries for TEX13B Gene

Entrez Gene Summary for TEX13B Gene

  • This gene is similar to a mouse gene that is expressed in the testis. [provided by RefSeq, Jul 2008]

GeneCards Summary for TEX13B Gene

TEX13B (Testis Expressed 13B) is a Protein Coding gene. An important paralog of this gene is TEX13A.

Additional gene information for TEX13B Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX13B Gene

Genomics for TEX13B Gene

Regulatory Elements for TEX13B Gene

Enhancers for TEX13B Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XH108033 1.2 Ensembl ENCODE 12.3 -52.8 -52822 4 HDAC1 ELF3 FOXA2 ARID4B BRCA1 RARA TCF12 FOS ATF7 THAP11 TEX13B VSIG1 GC0XM108072
GH0XH108070 0.6 ENCODE 12 -88.9 -88947 1 CTCF ZNF654 TRIM22 FOS ZNF384 RAD21 YY1 VSIG1 TEX13B ATG4A GC0XM108072
GH0XH108017 0.4 ENCODE 12.3 -36.2 -36233 1 RUNX3 TEX13B VSIG1 PIR62324
GH0XH108071 0.3 FANTOM5 12 -87.8 -87787 0 VSIG1 TEX13B GC0XM108072
GH0XH107979 0.6 ENCODE 0.7 +3.5 3455 0 CTCF ZNF654 ZNF792 RAD21 ZFHX2 ZNF610 SMC3 ZNF143 EGR2 TEX13B ENSG00000225728
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEX13B on UCSC Golden Path with GeneCards custom track

Genomic Location for TEX13B Gene

Chromosome:
X
Start:
107,980,864 bp from pter
End:
107,982,370 bp from pter
Size:
1,507 bases
Orientation:
Minus strand

Genomic View for TEX13B Gene

Genes around TEX13B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX13B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX13B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX13B Gene

Proteins for TEX13B Gene

  • Protein details for TEX13B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXU2-TX13B_HUMAN
    Recommended name:
    Testis-expressed protein 13B
    Protein Accession:
    Q9BXU2
    Secondary Accessions:
    • Q5JYF6

    Protein attributes for TEX13B Gene

    Size:
    312 amino acids
    Molecular mass:
    33967 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX13B Gene

Post-translational modifications for TEX13B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX13B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX13B Gene

Domains & Families for TEX13B Gene

Gene Families for TEX13B Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for TEX13B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX13B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BXU2

UniProtKB/Swiss-Prot:

TX13B_HUMAN :
  • Belongs to the TEX13 family.
Family:
  • Belongs to the TEX13 family.
genes like me logo Genes that share domains with TEX13B: view

Function for TEX13B Gene

genes like me logo Genes that share phenotypes with TEX13B: view

Animal Model Products

CRISPR Products

miRNA for TEX13B Gene

miRTarBase miRNAs that target TEX13B

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TEX13B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX13B Gene

Localization for TEX13B Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEX13B gene
Compartment Confidence
cytosol 2
mitochondrion 1
peroxisome 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TEX13B Gene

Pathways & Interactions for TEX13B Gene

SuperPathways for TEX13B Gene

No Data Available

Interacting Proteins for TEX13B Gene

Gene Ontology (GO) - Biological Process for TEX13B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX13B Gene

Drugs & Compounds for TEX13B Gene

No Compound Related Data Available

Transcripts for TEX13B Gene

mRNA/cDNA for TEX13B Gene

(1) REFSEQ mRNAs :
(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for TEX13B
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TEX13B Gene

No ASD Table

Relevant External Links for TEX13B Gene

GeneLoc Exon Structure for
TEX13B
ECgene alternative splicing isoforms for
TEX13B

Expression for TEX13B Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEX13B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX13B Gene

This gene is overexpressed in Testis (x29.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TEX13B Gene



Protein tissue co-expression partners for TEX13B Gene

NURSA nuclear receptor signaling pathways regulating expression of TEX13B Gene:

TEX13B

SOURCE GeneReport for Unigene cluster for TEX13B Gene:

Hs.333130

mRNA Expression by UniProt/SwissProt for TEX13B Gene:

Q9BXU2-TX13B_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expression patterns with TEX13B: view

Primer Products

No data available for Protein differential expression in normal tissues , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEX13B Gene

Orthologs for TEX13B Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX13B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX13B 33 34
  • 99.68 (n)
rat
(Rattus norvegicus)
Mammalia Tex13b 33
  • 73.08 (n)
mouse
(Mus musculus)
Mammalia Tex13 33 34
  • 72.41 (n)
Tex13b 16
dog
(Canis familiaris)
Mammalia -- 34
  • 55 (a)
ManyToMany
-- 34
  • 35 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia -- 34
  • 37 (a)
ManyToMany
-- 34
  • 33 (a)
ManyToMany
Species where no ortholog for TEX13B was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX13B Gene

ENSEMBL:
Gene Tree for TEX13B (if available)
TreeFam:
Gene Tree for TEX13B (if available)

Paralogs for TEX13B Gene

Paralogs for TEX13B Gene

(1) SIMAP similar genes for TEX13B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TEX13B: view

Variants for TEX13B Gene

Sequence variations from dbSNP and Humsavar for TEX13B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs1007306452 -- 107,984,245(+) CAACC(A/T)TTTTG intron-variant, upstream-variant-2KB
rs1007345717 -- 107,980,815(+) CCTGA(A/C)GATTG intron-variant, downstream-variant-500B
rs1008329599 -- 107,982,813(+) GGCCT(A/G)CCTTT intron-variant, upstream-variant-2KB
rs1008404561 -- 107,983,103(+) ATCCT(A/G)GCTAA intron-variant, upstream-variant-2KB
rs1008986803 -- 107,981,996(+) ACCTC(C/T)TCCCA intron-variant, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for TEX13B Gene

Variant ID Type Subtype PubMed ID
esv3577037 CNV gain 25503493
nsv525651 CNV gain 19592680

Variation tolerance for TEX13B Gene

Residual Variation Intolerance Score: 89.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.05; 60.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX13B Gene

Human Gene Mutation Database (HGMD)
TEX13B
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEX13B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX13B Gene

Disorders for TEX13B Gene

Relevant External Links for TEX13B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX13B

No disorders were found for TEX13B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX13B Gene

Publications for TEX13B Gene

  1. An abundance of X-linked genes expressed in spermatogonia. (PMID: 11279525) Wang PJ … Page DC (Nature genetics 2001) 2 3 4 60
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 60
  3. Molecular and cytogenetic characterization of two azoospermic patients with X-autosome translocation. (PMID: 14531651) Lee S … Cha KY (Journal of assisted reproduction and genetics 2003) 3 60

Products for TEX13B Gene

Sources for TEX13B Gene

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