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Aliases for TEX13B Gene

Aliases for TEX13B Gene

  • Testis Expressed 13B 2 3
  • Testis Expressed Sequence 13B 2 3
  • Testis-Expressed Sequence 13B Protein 3
  • TGC3B 3
  • TSGA5 3

External Ids for TEX13B Gene

Previous GeneCards Identifiers for TEX13B Gene

  • GC0XM102631
  • GC0XM104143
  • GC0XM105257
  • GC0XM105995
  • GC0XM107030
  • GC0XM107110
  • GC0XM107224
  • GC0XM096847

Summaries for TEX13B Gene

Entrez Gene Summary for TEX13B Gene

  • This gene is similar to a mouse gene that is expressed in the testis. [provided by RefSeq, Jul 2008]

GeneCards Summary for TEX13B Gene

TEX13B (Testis Expressed 13B) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX13B Gene

Genomics for TEX13B Gene

Regulatory Elements for TEX13B Gene

Genomic Location for TEX13B Gene

Start:
107,980,864 bp from pter
End:
107,982,370 bp from pter
Size:
1,507 bases
Orientation:
Minus strand

Genomic View for TEX13B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEX13B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX13B Gene

Proteins for TEX13B Gene

  • Protein details for TEX13B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXU2-TX13B_HUMAN
    Recommended name:
    Testis-expressed sequence 13B protein
    Protein Accession:
    Q9BXU2
    Secondary Accessions:
    • Q5JYF6

    Protein attributes for TEX13B Gene

    Size:
    312 amino acids
    Molecular mass:
    33967 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEX13B Gene

Proteomics data for TEX13B Gene at MOPED

Post-translational modifications for TEX13B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX13B Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEX13B Gene

Domains for TEX13B Gene

Protein Domains for TEX13B Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX13B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TEX13B: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TEX13B Gene

Function for TEX13B Gene

Phenotypes for TEX13B Gene

GenomeRNAi human phenotypes for TEX13B:
genes like me logo Genes that share phenotypes with TEX13B: view

Animal Model Products

CRISPR Products

miRNA for TEX13B Gene

miRTarBase miRNAs that target TEX13B

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX13B

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , Transcription Factor Targeting and HOMER Transcription for TEX13B Gene

Localization for TEX13B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TEX13B Gene COMPARTMENTS Subcellular localization image for TEX13B gene
Compartment Confidence
cytosol 2
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TEX13B Gene

Pathways for TEX13B Gene

SuperPathways for TEX13B Gene

No Data Available

Interacting Proteins for TEX13B Gene

Gene Ontology (GO) - Biological Process for TEX13B Gene

None

No data available for Pathways by source for TEX13B Gene

Transcripts for TEX13B Gene

mRNA/cDNA for TEX13B Gene

(2) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TEX13B

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TEX13B

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEX13B Gene

No ASD Table

Relevant External Links for TEX13B Gene

GeneLoc Exon Structure for
TEX13B
ECgene alternative splicing isoforms for
TEX13B

Expression for TEX13B Gene

mRNA expression in normal human tissues for TEX13B Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX13B Gene

This gene is overexpressed in Testis (29.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for TEX13B Gene

SOURCE GeneReport for Unigene cluster for TEX13B Gene Hs.333130

mRNA Expression by UniProt/SwissProt for TEX13B Gene

Q9BXU2-TX13B_HUMAN
Tissue specificity: Testis specific
genes like me logo Genes that share expressions with TEX13B: view

In Situ Assay Products

Orthologs for TEX13B Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX13B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEX13B 35
  • 99.68 (n)
  • 99.04 (a)
TEX13B 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 36
  • 33 (a)
ManyToMany
-- 36
  • 37 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia -- 36
  • 55 (a)
ManyToMany
-- 36
  • 35 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Tex13 35
  • 72.41 (n)
  • 62.91 (a)
Tex13 16
Tex13 36
  • 52 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Tex13b 35
  • 73.08 (n)
  • 64.74 (a)
Species with no ortholog for TEX13B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX13B Gene

ENSEMBL:
Gene Tree for TEX13B (if available)
TreeFam:
Gene Tree for TEX13B (if available)

Paralogs for TEX13B Gene

Selected SIMAP similar genes for TEX13B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TEX13B: view

No data available for Paralogs for TEX13B Gene

Variants for TEX13B Gene

Sequence variations from dbSNP and Humsavar for TEX13B Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs807237 -- 107,984,281(+) GTCTG(A/G)CGGTA upstream-variant-2KB
rs807238 -- 107,983,479(-) TACTC(C/T)TACAA upstream-variant-2KB
rs807239 -- 107,983,255(-) TGCAG(A/T)GGTGC upstream-variant-2KB
rs3933245 -- 107,983,440(+) GATCT(A/G)TGATG upstream-variant-2KB
rs4478730 -- 107,983,896(+) CATTG(A/T)AAATA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TEX13B Gene

Variant ID Type Subtype PubMed ID
nsv525651 CNV Gain 19592680

Relevant External Links for TEX13B Gene

HapMap Linkage Disequilibrium report
TEX13B
Human Gene Mutation Database (HGMD)
TEX13B
Locus Specific Mutation Databases (LSDB)
TEX13B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TEX13B Gene

Disorders for TEX13B Gene

No disorders were found for TEX13B Gene.

No data available for UniProtKB/Swiss-Prot for TEX13B Gene

Publications for TEX13B Gene

  1. An abundance of X-linked genes expressed in spermatogonia. (PMID: 11279525) Wang P.J. … Page D.C. (Nat. Genet. 2001) 2 3 4
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  3. Molecular and cytogenetic characterization of two azoospermic patients with X-autosome translocation. (PMID: 14531651) Lee S. … Cha K.Y. (J. Assist. Reprod. Genet. 2003) 3

Products for TEX13B Gene

Sources for TEX13B Gene

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