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Aliases for TEX13A Gene

Aliases for TEX13A Gene

  • Testis Expressed 13A 2 3 5
  • Testis Expressed Sequence 13A 2

External Ids for TEX13A Gene

Previous GeneCards Identifiers for TEX13A Gene

  • GC0XM099775
  • GC0XM101382
  • GC0XM102496
  • GC0XM103235
  • GC0XM104269
  • GC0XM104463
  • GC0XM094089

Summaries for TEX13A Gene

Entrez Gene Summary for TEX13A Gene

  • This gene is similar to a mouse gene that is expressed in the testis. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Mar 2014]

GeneCards Summary for TEX13A Gene

TEX13A (Testis Expressed 13A) is a Protein Coding gene. An important paralog of this gene is TEX13C.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEX13A Gene

Genomics for TEX13A Gene

Regulatory Elements for TEX13A Gene

Genomic Location for TEX13A Gene

Chromosome:
X
Start:
105,218,929 bp from pter
End:
105,220,693 bp from pter
Size:
1,765 bases
Orientation:
Minus strand

Genomic View for TEX13A Gene

Genes around TEX13A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEX13A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEX13A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEX13A Gene

Proteins for TEX13A Gene

  • Protein details for TEX13A Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BXU3-TX13A_HUMAN
    Recommended name:
    Testis-expressed sequence 13A protein
    Protein Accession:
    Q9BXU3
    Secondary Accessions:
    • B1B1G8
    • Q32NB6

    Protein attributes for TEX13A Gene

    Size:
    409 amino acids
    Molecular mass:
    45583 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAI41996.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for TEX13A Gene

Proteomics data for TEX13A Gene at MOPED

Post-translational modifications for TEX13A Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TEX13A Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for TEX13A Gene

Domains & Families for TEX13A Gene

Gene Families for TEX13A Gene

Protein Domains for TEX13A Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for TEX13A Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BXU3

UniProtKB/Swiss-Prot:

TX13A_HUMAN :
  • Belongs to the TEX13 family.
  • Contains 1 RanBP2-type zinc finger.
Family:
  • Belongs to the TEX13 family.
Similarity:
  • Contains 1 RanBP2-type zinc finger.
genes like me logo Genes that share domains with TEX13A: view

Function for TEX13A Gene

Gene Ontology (GO) - Molecular Function for TEX13A Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with TEX13A: view

Phenotypes for TEX13A Gene

GenomeRNAi human phenotypes for TEX13A:
genes like me logo Genes that share phenotypes with TEX13A: view

Animal Model Products

miRNA for TEX13A Gene

miRTarBase miRNAs that target TEX13A

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TEX13A Gene

Localization for TEX13A Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TEX13A Gene COMPARTMENTS Subcellular localization image for TEX13A gene
Compartment Confidence
nucleus 3
cytosol 2

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TEX13A Gene

Pathways & Interactions for TEX13A Gene

SuperPathways for TEX13A Gene

No Data Available

Interacting Proteins for TEX13A Gene

Selected Interacting proteins: Q9BXU3-TX13A_HUMAN for TEX13A Gene via UniProtKB

Symbol External ID(s) Details
TBC1D10A

Gene Ontology (GO) - Biological Process for TEX13A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TEX13A Gene

Drugs & Compounds for TEX13A Gene

No Compound Related Data Available

Transcripts for TEX13A Gene

mRNA/cDNA for TEX13A Gene

(2) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(10) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEX13A Gene

Testis expressed 13A:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TEX13A Gene

No ASD Table

Relevant External Links for TEX13A Gene

GeneLoc Exon Structure for
TEX13A
ECgene alternative splicing isoforms for
TEX13A

Expression for TEX13A Gene

mRNA expression in normal human tissues for TEX13A Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TEX13A Gene

This gene is overexpressed in Testis (x53.0).

Protein differential expression in normal tissues from HIPED for TEX13A Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TEX13A Gene



SOURCE GeneReport for Unigene cluster for TEX13A Gene Hs.567543

mRNA Expression by UniProt/SwissProt for TEX13A Gene

Q9BXU3-TX13A_HUMAN
Tissue specificity: Testis specific.
genes like me logo Genes that share expression patterns with TEX13A: view

Protein tissue co-expression partners for TEX13A Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for TEX13A Gene

This gene was present in the common ancestor of mammals.

Orthologs for TEX13A Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TEX13B 35
  • 72.84 (n)
  • 58.58 (a)
dog
(Canis familiaris)
Mammalia LOC492058 35
  • 73.76 (n)
  • 62.26 (a)
mouse
(Mus musculus)
Mammalia Tex13a 35
  • 65.32 (n)
  • 53.69 (a)
Tex13a 16
chimpanzee
(Pan troglodytes)
Mammalia TEX13A 35
  • 99.02 (n)
  • 98.04 (a)
rat
(Rattus norvegicus)
Mammalia Tex13a 35
  • 62.37 (n)
  • 49.19 (a)
Species with no ortholog for TEX13A:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEX13A Gene

ENSEMBL:
Gene Tree for TEX13A (if available)
TreeFam:
Gene Tree for TEX13A (if available)

Paralogs for TEX13A Gene

Paralogs for TEX13A Gene

(1) SIMAP similar genes for TEX13A Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TEX13A: view

Variants for TEX13A Gene

Variation tolerance for TEX13A Gene

Gene Damage Index Score: 0.58; 12.59% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEX13A Gene

HapMap Linkage Disequilibrium report
TEX13A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Structural Variations from Database of Genomic Variants (DGV) for TEX13A Gene

Disorders for TEX13A Gene

Relevant External Links for TEX13A

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEX13A

No disorders were found for TEX13A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEX13A Gene

Publications for TEX13A Gene

  1. An abundance of X-linked genes expressed in spermatogonia. (PMID: 11279525) Wang P.J. … Page D.C. (Nat. Genet. 2001) 2 3 4 67
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3
  4. Molecular and cytogenetic characterization of two azoospermic patients with X-autosome translocation. (PMID: 14531651) Lee S. … Cha K.Y. (J. Assist. Reprod. Genet. 2003) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for TEX13A Gene

Sources for TEX13A Gene

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