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TEX12 Gene

protein-coding   GIFtS: 46
GCID: GC11P112038

Testis Expressed 12

(Previous name: testis expressed sequence 12)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Testis Expressed 121 2
Testis Expressed Sequence 121 2
Testis-Expressed Sequence 12 Protein2
Testis-Expressed Sequence 12 Protein Variant 22
Testis-Expressed Sequence 12 Protein Variant 32

External Ids:    HGNC: 117341   Entrez Gene: 561582   Ensembl: ENSG000001507837   OMIM: 6057915   UniProtKB: Q9BXU03   

Export aliases for TEX12 gene to outside databases

Previous GC identifers: GC11U990274 GC11P113550 GC11P112071 GC11P111575 GC11P111543 GC11P107962


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for TEX12 Gene:
This gene is similar to a mouse gene that is expressed in the testis. (provided by RefSeq, Jul 2008)

GeneCards Summary for TEX12 Gene:
TEX12 (testis expressed 12) is a protein-coding gene. Diseases associated with TEX12 include infertility, and retinitis.




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000011.10  NC_018922.2  NT_033899.9  
Regulatory elements:
   Regulatory transcription factor binding sites in the TEX12 gene promoter:
         TBP   ATF-2   IRF-7A   NF-kappaB   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTEX12 promoter sequence
   Search Chromatin IP Primers for TEX12

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TEX12


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q22   Ensembl cytogenetic band:  11q23.1   HGNC cytogenetic band: 11q23.1

TEX12 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TEX12 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11P112038:  view genomic region     (about GC identifiers)

Start:
112,038,095 bp from pter      End:
112,043,282 bp from pter
Size:
5,188 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: TEX12_HUMAN, Q9BXU0 (See protein sequence)
Recommended Name: Testis-expressed sequence 12 protein  
Size: 123 amino acids; 14107 Da
Secondary accessions: A6NDL9 B0YIX3

Explore the universe of human proteins at neXtProt for TEX12: NX_Q9BXU0

Explore proteomics data for TEX12 at MOPED


See TEX12 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_112565.1  
ENSEMBL proteins: 
 ENSP00000436893   ENSP00000280358  
Reactome Protein details: Q9BXU0

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q9BXU0


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 1 molecular function term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005515protein binding ----
     
TEX12 for ontologies           About GeneDecksing


Phenotypes:
     2 MGI mutant phenotypes (inferred from 1 allele(MGI details for Tex12):
 endocrine/exocrine gland  reproductive system 

TEX12 for phenotypes           About GeneDecksing

Animal Models:
     MGI mouse knock-out Tex12tm1Hoog for TEX12

   inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for TEX12
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hsa-miR-616* hsa-miR-590-3p hsa-miR-373*
SwitchGear 3'UTR luciferase reporter plasmidTEX12 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus2
cytoskeleton1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000795synaptonemal complex IEA--

TEX12 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for TEX12 About    
See pathways by source

SuperPathContained pathways About
1Packaging Of Telomere Ends
Meiotic Synapsis0.66
Chromosome Maintenance0.62
2Cell Cycle, Mitotic
Cell Cycle0.90
3Meiosis (REACTOME)
Meiosis0.74

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


1 Reactome Pathway for TEX12
    Meiotic synapsis



TEX12 for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for TEX12
Interactions:

    Search GeneGlobe Interaction Network for TEX12

STRING Interaction Network Preview (showing 5 interactants - click image to see 22)

Selected Interacting proteins for TEX12 (ENSP000002803584) via UniProtKB, MINT, STRING, and/or I2D (see all 22)
InteractantInteraction Details
GeneCardExternal ID(s)
HSPA2ENSP000002472074STRING: ENSP00000247207
RAD21ENSP000002973384STRING: ENSP00000297338
SMC3ENSP000003547204STRING: ENSP00000354720
STAG2ENSP000002180894STRING: ENSP00000218089
SYCE1ENSP000003412824STRING: ENSP00000341282
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for TEX12



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for TEX12 gene: 
NM_031275.4  

Unigene Cluster for TEX12:

Testis expressed 12
Hs.524039  [show with all ESTs]
Unigene Representative Sequence: BC029506
2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000530752 ENST00000280358(uc001pnc.3 uc001pnd.3)
miRNA
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3 qRT-PCR Assays for microRNAs that regulate TEX12:
hsa-miR-616* hsa-miR-590-3p hsa-miR-373*
SwitchGear 3'UTR luciferase reporter plasmidTEX12 3' UTR sequence
Inhib. RNA
Products:
     
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Predesigned siRNA for gene silencing in human, mouse, rat TEX12
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GenScript: all cDNA clones in your preferred vector: TEX12 (NM_031275)
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Primer
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Pre-validated RT2 qPCR Primer Assay in human, mouse, rat TEX12
  QuantiTect SYBR Green Assays in human, mouse, rat TEX12
  QuantiFast Probe-based Assays in human, mouse, rat TEX12

Additional mRNA sequence: 

AF285600.1 BC029506.1 

3 DOTS entries:

DT.40119013  DT.120733726  DT.97801556 

Selected AceView cDNA sequences (see all 1371):

CA394937 CB216076 CA947141 AJ709307 AA296985 BM312481 BI833790 AA302990 
BG741173 AA315473 BM818783 BX354210 CB269669 BG569394 BG403639 CK430277 
BI868737 AL561498 BQ272144 BE207116 BM823116 NM_031938 BM720390 BQ229571 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TEX12 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AACTACGTCA
TEX12 Expression
About this image


TEX12 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 5) fully expand
 
 Gonad
         XY Germ Cells Testis Cord
 
 Testis (Reproductive System)
         XY Germ Cells Testis Cord
 
 Epithelial Cells
         Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
 
 Ovary (Reproductive System)
         XX Germ Cells Ovigerous Cord
 
 Eye (Sensory Organs)
         Adult Retinal Pigmented Epithelium Cells Retinal Pigmented Epithelium
TEX12 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TEX12 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.524039

UniProtKB/Swiss-Prot: TEX12_HUMAN, Q9BXU0
Tissue specificity: Testis specific

    Custom PCR Arrays for TEX12
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QuantiFast Probe-based Assays in human, mouse, rat TEX12
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TEX12

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TEX12 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Tex121 , 5 testis expressed gene 121, 5 86.45(n)1
84.55(a)1
  9 (27.75 cM)5
666541  NM_025687.31  NP_079963.11 
 505571485 
chicken
(Gallus gallus)
Aves TEX121 testis expressed 12 58.4(n)
47.11(a)
  771186  XM_001233098.3  XP_001233099.3 


ENSEMBL Gene Tree for TEX12 (if available)
TreeFam Gene Tree for TEX12 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for TEX12 (see all 137)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 11 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1838540661,2
--112036888(+) TTATAC/TTGCTG 1 -- us2k10--------
rs1902757741,2
--112036970(+) CAGAGA/GGTAAA 1 -- us2k10--------
rs57442221,2
C,F,H--112037014(-) AGTCTC/AAAACA 1 -- us2k125Minor allele frequency- A:0.08NA EU NS EA 2198
rs1932574611,2
--112037039(+) AGTTAC/TCTAGG 1 -- us2k10--------
rs1850150761,2
--112037172(+) ACACAC/GAATAC 1 -- us2k10--------
rs30184651,2
H--112037177(-) TGGAAG/TTATTC 1 -- us2k14Minor allele frequency- T:0.00NS EA 418
rs798175621,2
--112037346(+) TTTTTC/TCTTCC 1 -- us2k10--------
rs12933441,2
C,F,O,A,H--112037384(+) AATGTA/GTATCT 1 -- us2k123Minor allele frequency- G:0.20MN NS EA NA WA 2670
rs753824261,2
C,F--112037413(+) GCCTCC/TGCATT 1 -- us2k12Minor allele frequency- T:0.08WA 120
rs29046141,2
H--112037422(-) GGGTGC/TTTTAA 1 -- us2k14Minor allele frequency- T:0.00NS EA 420

HapMap Linkage Disequilibrium report for TEX12 (112038095 - 112043282 bp)

Structural Variations
     Database of Genomic Variants (DGV) 2 variations for TEX12:    About this table    
Variant IDTypeSubtypePubMed ID
esv2745077CNV Deletion23290073
nsv519192CNV Gain19592680

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing TEX12
DNA2.0 Custom Variant and Variant Library Synthesis for TEX12

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605791    OMIM disorders: --

2 diseases for TEX12:    
About MalaCards
infertility    retinitis

1 disease from the University of Copenhagen DISEASES database for TEX12:
Infertility

TEX12 for disorders           About GeneDecksing

Genetic Association Database (GAD): TEX12
Human Genome Epidemiology (HuGE) Navigator: TEX12 (1 document)

Export disorders for TEX12 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TEX12 gene integrated from 10 sources:
(articles sorted by number of sources associating them with TEX12)
    Utopia: connect your pdf to the dynamic
world of online information

  1. An abundance of X-linked genes expressed in spermatogonia. (PubMed id 11279525)1, 2, 3 Wang P.J.... Page D.C. (Nat. Genet. 2001)
  2. Association between genetic variants in VEGF, ERCC3 and occupational benzene haematotoxicity. (PubMed id 19773279)1, 4 Hosgood H.D....Lan Q. (Occup Environ Med 2009)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. Structural analysis of the human SYCE2-TEX12 complex provides molecular insights into synaptonemal complex assembly. (PubMed id 22870393)1 Davies O.R....Pellegrini L. (Open Biol 2012)
  5. Expression of conjoined genes: another mechanism for gene regulation in eukaryotes. (PubMed id 20967262)1 Prakash T....Taylor T.D. (PLoS ONE 2010)
  6. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)1 Lamesch P.... Vidal M. (Genomics 2007)
  7. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)2 Taylor T.D....Sakaki Y. (Nature 2006)
  8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 56158 HGNC: 11734 AceView: SDHDandTEX12 Ensembl:ENSG00000150783 euGenes: HUgn56158
ECgene: TEX12 H-InvDB: TEX12

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TEX12 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TEX12 gene:
Search GeneIP for patents involving TEX12

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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Customized transgenic rodents for:
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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