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Aliases for TET2-AS1 Gene

Subcategory (RNA class) for TET2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TET2-AS1 Gene

  • TET2 Antisense RNA 1 2 3 5
  • TET2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for TET2-AS1 Gene

Previous GeneCards Identifiers for TET2-AS1 Gene

  • GC04M106093

Summaries for TET2-AS1 Gene

GeneCards Summary for TET2-AS1 Gene

TET2-AS1 (TET2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TET2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TET2-AS1 Gene

Genomics for TET2-AS1 Gene

Regulatory Elements for TET2-AS1 Gene

Enhancers for TET2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH04H105149 1.3 FANTOM5 ENCODE dbSUPER 11.8 +202.8 202810 0 HLF CHD1 CEBPB MAX CEBPG ZNF644 RAD21 JUND CEBPA HNF4G TET2 TET2-AS1 PPA2 RN7SL89P
GH04H105144 1.3 ENCODE dbSUPER 11.8 +206.0 205952 5 HDGF PKNOX1 ATF1 FOXA2 ARNT SIN3A YBX1 YY1 GLIS2 ZNF143 EEF1A1P9 TET2-AS1 ENSG00000250740 TET2 PPA2 RN7SL89P
GH04H105196 1.1 Ensembl ENCODE dbSUPER 11.3 +155.9 155881 1 CTCF EED JUN IKZF1 IKZF2 SPI1 TET2-AS1 TET2 RNU6-351P ENSG00000248373 ENSG00000252136 LOC100288146 RN7SL89P
GH04H105471 1.1 ENCODE 10.9 -120.1 -120132 3 HDGF FOXA2 PKNOX1 ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 TET2-AS1 PPA2 RNU6-553P
GH04H105158 0.8 dbSUPER 11.8 +194.2 194166 1 SOX13 MXI1 FOXA2 SAP130 ZFP64 ARID4B SIN3A MAX RAD21 YY1 TET2-AS1 ENSG00000252136 LOC100288146 PPA2 TET2 RN7SL89P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TET2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TET2-AS1 Gene

Chromosome:
4
Start:
105,171,354 bp from pter
End:
105,352,881 bp from pter
Size:
181,528 bases
Orientation:
Minus strand

Genomic View for TET2-AS1 Gene

Genes around TET2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TET2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TET2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TET2-AS1 Gene

Proteins for TET2-AS1 Gene

Post-translational modifications for TET2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TET2-AS1 Gene

Domains & Families for TET2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TET2-AS1 Gene

Function for TET2-AS1 Gene

Phenotypes From GWAS Catalog for TET2-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TET2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TET2-AS1 Gene

Localization for TET2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TET2-AS1 Gene

Pathways & Interactions for TET2-AS1 Gene

SuperPathways for TET2-AS1 Gene

No Data Available

Interacting Proteins for TET2-AS1 Gene

Gene Ontology (GO) - Biological Process for TET2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TET2-AS1 Gene

Drugs & Compounds for TET2-AS1 Gene

No Compound Related Data Available

Transcripts for TET2-AS1 Gene

mRNA/cDNA for TET2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for TET2-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for TET2-AS1 Gene

No ASD Table

Relevant External Links for TET2-AS1 Gene

GeneLoc Exon Structure for
TET2-AS1
ECgene alternative splicing isoforms for
TET2-AS1

Expression for TET2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TET2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for TET2-AS1 Gene

This gene is overexpressed in Esophagus - Muscularis (x4.0).
genes like me logo Genes that share expression patterns with TET2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TET2-AS1 Gene

Orthologs for TET2-AS1 Gene

Evolution for TET2-AS1 Gene

ENSEMBL:
Gene Tree for TET2-AS1 (if available)
TreeFam:
Gene Tree for TET2-AS1 (if available)

No data available for Orthologs for TET2-AS1 Gene

Paralogs for TET2-AS1 Gene

No data available for Paralogs for TET2-AS1 Gene

Variants for TET2-AS1 Gene

Sequence variations from dbSNP and Humsavar for TET2-AS1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs869025296 Uncertain significance 105,236,073(+) AGACT(C/G)AGCCA intron-variant, nc-transcript-variant, reference, missense
rs111678678 untested 105,237,058(+) CAAGT(C/T)GTTAT intron-variant, nc-transcript-variant, reference, missense
rs111948941 untested 105,234,042(+) CAAAG(C/T)TCCAG intron-variant, nc-transcript-variant, reference, missense
rs114619974 untested 105,234,376(+) TTTGA(A/G)TGATA intron-variant, nc-transcript-variant, reference, missense
rs12498609 untested 105,234,028(+) AGAAC(C/G)TCTGG intron-variant, nc-transcript-variant, reference, missense

Relevant External Links for TET2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TET2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TET2-AS1 Gene

Disorders for TET2-AS1 Gene

Relevant External Links for TET2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TET2-AS1

No disorders were found for TET2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TET2-AS1 Gene

Publications for TET2-AS1 Gene

No publications were found for TET2-AS1 Gene.

Products for TET2-AS1 Gene

Sources for TET2-AS1 Gene

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