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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TET1 Gene

protein-coding   GIFtS: 48
GCID: GC10P070320

tet methylcytosine dioxygenase 1

(Previous names: CXXC zinc finger 6, tet oncogene 1 )
(Previous symbol: CXXC6)
 Explore 8 diseases affiliated with
TET1 via our new
 Human Malady Compendium 
Biological research products
for TET1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Tet Methylcytosine Dioxygenase 11 2     Leukemia-Associated Protein With A CXXC Domain2 3
CXXC61 2 3 5     Ten-Eleven Translocation 1 Gene Protein2 3
LCX1 2 3 5     CXXC-Type Zinc Finger Protein 62 3
KIAA16761 3 5     EC 1.14.11.N21
BA119F7.11     CXXC Finger 62
CXXC Zinc Finger 61 2     Methylcytosine Dioxygenase TET12
Tet Oncogene 11 2     Ten-Eleven Translocation-12

External Ids:    HGNC: 294841   Entrez Gene: 803122   Ensembl: ENSG000001383367   OMIM: 6077905   UniProtKB: Q8NFU73   

Export aliases for TET1 gene to outside databases

Previous GC identifers: GC10P069991 GC10P064321


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: TET1_HUMAN, Q8NFU7
Function: Dioxygenase that catalyzes the conversion of the modified genomic base 5-methylcytosine (5mC) into
5-hydroxymethylcytosine (5hmC). Might initiate a process leading to cytosine demethylation through deamination into
5-hydroxymethyluracil (5hmU) and subsequent replacement by unmethylated cytosine by the base excision repair system.
Methylation at the C5 position of cytosine bases is an epigenetic modification of the mammalian genome which plays an
important role in transcriptional regulation. Preferentially binds to CpG-rich sequences at promoters of both
transcriptionally active and polycomb-repressed genes. By controlling the levels of 5mC and 5hmC at gene promoters, it
may regulate the gene expression silencing induced by cytosine methylation. May have a dual function by also
repressing the expression of a subset of genes through recruitment of transcriptional repressors to promoters.
Involved in the balance between pluripotency and lineage commitment of cells it plays a role in embryonic stem cells
maintenance and inner cell mass cell specification




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.1  NT_030059.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TET1 gene promoter:
         STAT1   RREB-1   Pax-6   STAT1beta   FOXO3   STAT1alpha   FOXO3b   MZF-1   FOXO3a   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTET1 promoter sequence
   Search SABiosciences Chromatin IP Primers for TET1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TET1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q21   Ensembl cytogenetic band:  10q21.3   HGNC cytogenetic band: 10q21

TET1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TET1 gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P070320:  view genomic region     (about GC identifiers)

Start:
70,320,117 bp from pter      End:
70,454,239 bp from pter
Size:
134,123 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TET1_HUMAN, Q8NFU7 (See protein sequence)
Recommended Name: Methylcytosine dioxygenase TET1  
Size: 2136 amino acids; 235309 Da
Cofactor: Binds 1 Fe(2+) ion per subunit
Subunit: Interacts with SIN3A; recruits the transcriptional co-repressor SIN3A to gene promoters
Subcellular location: Nucleus (Probable)
Sequence caution: Sequence=CAD28467.3; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Potential poly-A
sequence;
Secondary accessions: Q5VUP7 Q7Z6B6 Q8TCR1 Q9C0I7

Explore the universe of human proteins at neXtProt for TET1: NX_Q8NFU7

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8NFU7

  • 4 DME Specific Peptides for TET1 (Q8NFU7)
     SLVFYQHK  YTHLGAGP  GCPIAKWV  EGRPFSGVT 

    TET1 Protein expression data from MOPED and PaxDb:    About this image 
    TET1 Protein Expression
    REFSEQ proteins: NP_085128.2  
    ENSEMBL proteins: 
     ENSP00000362748  

    Human Recombinant Protein Products for TET1: 
    Browse Purified and Recombinant Proteins at EMD Millipore
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    Browse recombinant and purified proteins available from Enzo Life Sciences
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    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for TET1 
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    Novus Biologicals TET1 Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TET1

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IC19372391

    TET1 for ontologies           About GeneDecksing



    TET1 Antibody Products: 
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    Search ThermoFisher Antibodies for TET1

    Assay Products for TET1: 
    Browse Kits and Assays available from EMD Millipore
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    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
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    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for TET1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TET1 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR002857 Znf_CXXC
     IPR024779 2OGFeDO_nucleic_acid_mod

    Graphical View of Domain Structure for InterPro Entry Q8NFU7

    ProtoNet protein and cluster: Q8NFU7

    UniProtKB/Swiss-Prot: TET1_HUMAN, Q8NFU7
    Similarity: Belongs to the TET family
    Similarity: Contains 1 CXXC-type zinc finger


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: TET1_HUMAN, Q8NFU7
    Function: Dioxygenase that catalyzes the conversion of the modified genomic base 5-methylcytosine (5mC) into
    5-hydroxymethylcytosine (5hmC). Might initiate a process leading to cytosine demethylation through deamination into
    5-hydroxymethyluracil (5hmU) and subsequent replacement by unmethylated cytosine by the base excision repair system.
    Methylation at the C5 position of cytosine bases is an epigenetic modification of the mammalian genome which plays an
    important role in transcriptional regulation. Preferentially binds to CpG-rich sequences at promoters of both
    transcriptionally active and polycomb-repressed genes. By controlling the levels of 5mC and 5hmC at gene promoters, it
    may regulate the gene expression silencing induced by cytosine methylation. May have a dual function by also
    repressing the expression of a subset of genes through recruitment of transcriptional repressors to promoters.
    Involved in the balance between pluripotency and lineage commitment of cells it plays a role in embryonic stem cells
    maintenance and inner cell mass cell specification
    Catalytic activity: DNA 5-methylcytosine + 2-oxoglutarate + O(2) = DNA 5-hydroxymethylcytosine + succinate + CO(2)

         Enzyme Number (IUBMB): EC 1.14.11.n21 2

         Gene Ontology (GO): 5 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005506iron ion binding IDA19372391
    GO:0008270zinc ion binding IEA--
    GO:0016702oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA--
    GO:0043566structure-specific DNA binding IDA19372391
    GO:0070579methylcytosine dioxygenase activity IMP--
         
    TET1 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for TET1:
     Increased S DNA content  Increased number of mitotic ce 

         5 MGI mutant phenotypes (inferred from 1 allele(MGI details for Tet1):
     embryogenesis  growth/size  hematopoietic system  immune system  reproductive system 

    TET1 for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-out Tet1tm1.1Jae for TET1
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for TET1 

    miRNA
    Products:
        
    miRTarBase miRNAs that target TET1:
    hsa-mir-29b (MIRT004419), hsa-mir-29a (MIRT004420)

    OriGene 3'-UTR Clone: TET1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TET1
    8/89 QIAGEN miScript miRNA Assays for microRNAs that regulate TET1 (see all 89):
    hsa-miR-520e hsa-miR-520f hsa-miR-188-5p hsa-miR-376b hsa-miR-106a hsa-miR-200a hsa-miR-128 hsa-miR-30d
    SwitchGear 3'UTR luciferase reporter plasmidTET1 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TET1 (see all 4)
    OriGene shRNA RFP: TET1
    OriGene siRNA: TET1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TET1
    Sirion Biotech Custom design and validation of potent shRNA sequences against TET1 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for TET1
    Sirion Biotech Customized adenovirus for overexpression of TET1 
    Sirion Biotech Customized adenovirus for potent knockdown of TET1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TET1 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TET1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TET1 (NM_030625)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TET1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TET1 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for TET1
    Search LifeMap BioReagents cell lines for TET1
    Sirion Biotech Customized stable knockdown cell line services for TET1 
    Sirion Biotech Customized inducible knockdown cell line services for TET1

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TET1


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TET1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    1 Interacting protein for TET1 (ENSP000003627484) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MBD3ENSP000001568254STRING: ENSP00000156825
    About this table

    Gene Ontology (GO): 5/7 biological process terms (GO ID links to tree view) (see all 7):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001826inner cell mass cell differentiation ISS--
    GO:0006351transcription, DNA-dependent IEA--
    GO:0016568chromatin modification IEA--
    GO:0019827stem cell maintenance ISS--
    GO:0044030regulation of DNA methylation IEA--

    TET1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TET1
    Search CenterWatch for drugs/clinical trials and news about TET1 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TET1 gene: 
    NM_030625.2  

    Unigene Cluster for TET1:

    Tet methylcytosine dioxygenase 1
    Hs.567594  [show with all ESTs]
    Unigene Representative Sequence: NM_030625
    1 Ensembl transcript including schematic representation, and UCSC links where relevant:
    ENST00000373644(uc001jok.4 uc009xpw.1)

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: TET1
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat TET1
    8/89 QIAGEN miScript miRNA Assays for microRNAs that regulate TET1 (see all 89):
    hsa-miR-520e hsa-miR-520f hsa-miR-188-5p hsa-miR-376b hsa-miR-106a hsa-miR-200a hsa-miR-128 hsa-miR-30d
    SwitchGear 3'UTR luciferase reporter plasmidTET1 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for TET1 (see all 4)
    OriGene shRNA RFP: TET1
    OriGene siRNA: TET1
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat TET1
    Sirion Biotech Custom design and validation of potent shRNA sequences against TET1 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TET1 (see all 2)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TET1
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: TET1 (NM_030625)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for TET1
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TET1 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TET1
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TET1
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TET1
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TET1

    Additional cDNA sequence: 

    AB051463.1 AF430147.1 AK123436.1 AL832334.1 AL832337.1 BC053905.1 FM165197.1 

    4 DOTS entries:

    DT.432626  DT.101972582  DT.91951770  DT.121238941 

    24/52 AceView cDNA sequences (see all 52):

    AF430147 CA412990 AW025923 AK123436 AI652906 BX955006 AI741535 W93385 
    AL713658 W94969 AB051463 NM_030625 AI637887 AL832337 AW339808 BE463873 
    BX103926 AI625029 BM698070 BC053905 CD652797 BP871022 CD643453 C05315 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TET1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    TET1 Expression
    About this image

    TET1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    Stem Cell Differentiation: 2 LifeMap Cells 
    NameCategory
    Line H9 (WA09) (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    Sox17-GFP genetically modified stem cells (Embryonic Stem Cell)Early Embryo, Inner Cell Mass
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TET1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TET1

    SOURCE GeneReport for Unigene cluster: Hs.567594

    UniProtKB/Swiss-Prot: TET1_HUMAN, Q8NFU7
    Tissue specificity: Expressed in fetal heart, lung and brain, and in adult skeletal muscle, thymus and ovary. Not
    detected in adult heart, lung or brain

        SABiosciences Custom PCR Arrays for TET1
    Primer
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    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TET1
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    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TET1
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TET1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TET1 gene from 5/16 species (see all 16)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Tet11 , 5 tet methylcytosine dioxygenase 11, 5 70.23(n)1
    57.82(a)1
      10 (32.48 cM)5
    524631  NM_027384.11  NP_081660.11 
     628045775 
    chicken
    (Gallus gallus)
    Aves TET11 tet oncogene 1 58.22(n)
    46.9(a)
      423690  XM_421571.3  XP_421571.3 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    --
    58(a)
    28(a)
    many → 1
    many → 1
    GL343215.1(1756731-1763210)
    GL343215.1(1689107-1733035)
    zebrafish
    (Danio rerio)
    Actinopterygii tet16
    tet methylcytosine dioxygenase 1
    29(a)
    1 ↔ 1
    13(18251676-18344901)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG434446
    --
    13(a)
    1 → many
    3L(2786206-2879158)


    ENSEMBL Gene Tree for TET1 (if available)
    TreeFam Gene Tree for TET1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TET1 gene
    TET22  TET32  
    1 SIMAP similar gene for TET1 using alignment to 1 protein entry:     TET1_HUMAN:
    CXXC4

    TET1 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for TET1
    PGOHUM00000248454


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/2688 NCBI SNPs in TET1 are shown (see all 2688    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1411487931,2
    --70318122(+) TTACCA/GTGGAC 1 -- us2k10--------
    rs1469188371,2
    --70318189(+) GTTAAG/TTGACA 1 -- us2k10--------
    rs1149333741,2
    F--70318388(+) TGGTGC/TGCACT 1 -- us2k11Minor allele frequency- T:0.04WA 118
    rs118129871,2
    C,F,H--70318408(+) ACCTGA/CAAGTC 1 -- us2k16Minor allele frequency- C:0.01NS EA NA 400
    rs1814017931,2
    --70318436(+) AGTATC/GTTGCC 1 -- us2k10--------
    rs118167871,2
    H--70318452(+) actcaA/Ggctgg 1 -- us2k10--------
    rs1857626001,2
    --70318536(+) TCAAAA/GTGTTA 1 -- us2k10--------
    rs27959111,2
    C,F,H--70318669(-) CTGAGT/CCAATG 1 -- us2k116Minor allele frequency- C:0.01NS EA NA WA CSA 1358
    rs1173105381,2
    F--70318743(+) TCAACG/AGGTCA 1 -- us2k11Minor allele frequency- A:0.02NA 120
    rs1436984891,2
    --70318784(+) GCTCAC/TGCGTG 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for TET1 (70320117 - 70454239 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for TET1: --
    Human Gene Mutation Database (HGMD): TET1

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TET1
    DNA2.0 Custom Variant and Variant Library Synthesis for TET1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TET1 for disorders           About GeneDecksing

    OMIM gene information: 607790    OMIM disorders: --

    UniProtKB/Swiss-Prot: TET1_HUMAN, Q8NFU7
  • Note=A chromosomal aberration involving TET1 may be a cause of acute leukemias. Translocation
  • t(10;11)(q22;q23) with MLL. This is a rare chromosomal translocation 5' MLL-TET1 3'

    8 diseases for TET1:    About MalaCards
    leukemia    acute myeloid leukemia    myeloid leukemia    myeloid malignancy
    hematopoiesis    alzheimer's disease    tuberculosis    neuronitis

    Human Genome Epidemiology (HuGE) Navigator: TET1 (3 documents)

    Export disorders for TET1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for TET1 gene, integrated from 9 sources (see all 21):
    (articles sorted by number of sources associating them with TET1)
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    1. TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23). (PubMed id 12646957)1, 2, 3 Lorsbach R.B....Downing J.R. (2003)
    2. LCX, leukemia-associated protein with a CXXC domain, is fused to MLL in acute myeloid leukemia with trilineage dysplasia having t(10;11)(q22;q23). (PubMed id 12124344)1, 2, 3 Ono R.... Hayashi Y. (2002)
    3. Hydroxylation of 5-methylcytosine by TET1 promotes ac tive DNA demethylation in the adult brain. (PubMed id 21496894)1, 2 Guo J.U....Song H. (2011)
    4. Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by the MLL fusion partner TET1. (PubMed id 19372391)1, 2 Tahiliani M.... Rao A. (2009)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
    7. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970)1, 2 Nagase T.... Ohara O. (2000)
    8. Loss of 5-hydroxymethylcytosine is accompanied with ma lignant cellular transformation. (PubMed id 22320381)1 Kudo Y....Koike K. (2012)
    9. Nuclear exclusion of TET1 is associated with loss of 5 -hydroxymethylcytosine in IDH1 wild-type gliomas. (PubMed id 22688054)1 Muller T....Waha A. (2012)
    10. Oncometabolite 2-hydroxyglutarate is a competitive in hibitor of I+-ketoglutarate-dependent dioxygenases. (PubMed id 21251613)1 Xu W....Xiong Y. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 80312 HGNC: 29484 AceView: CXXC6 Ensembl:ENSG00000138336 euGenes: HUgn80312
    ECgene: TET1 H-InvDB: TET1

    (According to HUGE)
    About This Section
    HUGE: KIAA1676

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for TET1 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for TET1 gene:
    Search GeneIP for patents involving TET1

    GeneCards and IP:
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