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Aliases & Descriptions for TERF2IP
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| DRIP5 2 | | RAP1 1, 2, 3, 5 | | hRap1 3 |
| | | Descriptions |
|---|
| TRF2-interacting telomeric RAP1 protein 2 | | TRF2-interacting telomeric protein Rap1 3 | | dopamine receptor interacting protein 5 2 | | telomeric repeat binding factor 2, interacting protein 2 |
|
| | Search outside databases for aliases for TERF2IP genePrevious GC identifers: GC16P066611 GC16P076642 GC16P075420 GC16P075461 |
Summaries for TERF2IP(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: TE2IP_HUMAN, Q9NYB0Function: May play a role in telomere length regulation. Component of the shelterin complex (telosome) that is involved in the regulation of telomere length and protection. Shelterin associates with arrays of double-stranded TTAGGG repeats added by telomerase and protects chromosome ends; without its protective activity, telomeres are no longer hidden from the DNA damage surveillance and chromosome ends are inappropriately processed by DNA repair pathwaysGene Wiki entry for TERF2IP |
Genomic Location for TERF2IP
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the TERF2IP gene 
Entrez Gene cytogenetic band: 16q23.1 Ensembl cytogenetic band: 16q23.1 HGNC cytogenetic band: 16q22.3TERF2IP Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16P074239:
(about GC identifiers)
Start:
|
74,239,185 bp from pter |
End:
|
74,248,829 bp from pter |
Size:
|
9,645 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000016.8 NT_010498.15
| Proteins for TERF2IP
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TE2IP_HUMAN, Q9NYB0 (See
protein sequence)Recommended Name: Telomeric repeat-binding factor 2-interacting protein 1 Size: 399 amino acids; 44260 Da
Subunit: Homodimer. Component of the shelterin complex (telosome) composed of TERF1, TERF2, TINF2, TERF2IP ACD and POT1. Binds to TRF2 (but not TRF1) with its C-terminus
Subcellular location: Nucleus. Telomere. Note=Colocalizes with telomeric DNA in interphase and metaphase cells
Miscellaneous: Recruited to telomeres by TRF2; seemingly it does not directly bind to DNA itself
Sequence caution: Sequence=AAL55783.1; Type=Frameshift; Positions=151; Sequence=BAA91317.1; Type=Erroneous termination; Positions=299; Note=Translated as Glu;
PDB structures from and Proteopedia :1FEX (3D)
 
Secondary accessions: Q8WYZ3 Q9NWR2Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_061848.2
ENSEMBL proteins: ENSP00000300086
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
): About this table
Antibodies for TERF2IP: Assays for TERF2IP: | Protein
Domains/ Families for TERF2IP(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q9NYB0
ProtoNet protein and cluster: Q9NYB0 1 Blocks protein family: IPB001357 BRCT domain
UniProtKB/Swiss-Prot: TE2IP_HUMAN, Q9NYB0Similarity: Contains 1 BRCT domainSimilarity: Contains 1 Myb-like domain | Gene Function for TERF2IP
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018975
Applied Biosystems Silencer® siRNAs for TERF2IP
Sigma-Aldrich siRNA for TERF2IP  Sigma-Aldrich shRNA for TERF2IP  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_018975                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018975                                  untagged cDNA clone in CMV expression vector: NM_018975 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_018975
UniProtKB/Swiss-Prot: TE2IP_HUMAN, Q9NYB0Function: May play a role in telomere length regulation. Component of the shelterin complex (telosome) that is involved in the regulation of telomere length and protection. Shelterin associates with arrays of double-stranded TTAGGG repeats added by telomerase and protects chromosome ends; without its protective activity, telomeres are no longer hidden from the DNA damage surveillance and chromosome ends are inappropriately processed by DNA repair pathways3 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for TERF2IP
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
Gene Network CentralTM Interacting Genes and Proteins Network for TERF2IP 
5/19 Interacting proteins for TERF2IP (Q9NYB01, 2 ENSP000003000863) via UniProtKB, MINT, and/or STRING (see all 19
)About this table
5 Gene Ontology (GO) biological process terms (links to tree view): About this table
|
Drugs & Compounds for TERF2IP(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for TERF2IP 1 Novoseek chemical compound relationship for TERF2IP gene
About this table
|
Transcripts for TERF2IP(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_018975
Sigma-Aldrich siRNA for TERF2IP  Sigma-Aldrich shRNA for TERF2IP  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_018975 REFSEQ mRNAs for TERF2IP gene: NM_018975.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_018975               OriGene GFP tagged cDNA clone in CMV expression vector: NM_018975                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_018975                                  untagged cDNA clone in CMV expression vector: NM_018975  Additional cDNA sequence: AF250393.1 AF262988.1 AF289599.1 AK298535.1 AK298880.1 AK307901.1 BC004465.1 BC005841.2 BC016739.1 BC022428.1 BC078171.1 CR600658.1 CR601111.1 CR605991.1 CR612877.1 CR613478.1 CR626430.1 24/26 DOTS entries (see all 26
): DT.119914 DT.100764395 DT.455827 DT.100654768 DT.100887098 DT.100699573 DT.100887099 DT.92449074 DT.99975006 DT.120666393 DT.120666414 DT.120666466 DT.95264203 DT.100662279 DT.100676787 DT.100836385 DT.100887097 DT.100887112 DT.120666356 DT.91683860 DT.95286125 DT.97859746 DT.100887108 DT.120666395 24/467 AceView cDNA sequences (see all 467
):AA617859 AA931557 BU734959 BC078171 AA434343 BQ424429 AV709151 BE695788 BG529655 AW292103 BI334411 BQ017033 BU682518 T16111 BQ222570 W19779 BC004465 AA447396 AI445177 BU687403 AW248587 BF149399 CR613478 AA382948
highest scoring ESTs for TERF2IP:AA010763 AA011124 AA056043 AA113346 AA142859 AA164794 AA164795 AA164961 AA307828 AA310059 Unigene Cluster for TERF2IP: Telomeric repeat binding factor 2, interacting protein Hs.301419 [show with all ESTs]Unigene Representative Sequence: AF289599
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for TERF2IP
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3 | |
| SP1: | |   | |   | - |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for TERF2IP
1 Ensembl transcript including schematic representation: ENST00000300086
|
Expression for TERF2IP
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| TERF2IP expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for TERF2IP
1 / 2 / 3 4 probe-sets matching TERF2IP gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTAGGTGAGG
SOURCE GeneReport for Unigene cluster: Hs.301419
Expression variation in blood from EXPOLDB for TERF2IP UniProtKB/Swiss-Prot: TE2IP_HUMAN, Q9NYB0Tissue specificity: Ubiquitous. Highly expressed |
Orthologs for TERF2IP
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for TERF2IP gene from 5/6 species (see all 6
)
About this table Species with no ortholog for TERF2IP
ENSEMBL Gene Tree for TERF2IP | Paralogs for TERF2IP(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for TERF2IP(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for TERF2IP (up to first 250kb)
|
Disorders & Mutations for TERF2IP
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 605061
2 Novoseek disease relationships for TERF2IP gene
About this table
|
Medical News for TERF2IP(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for TERF2IP (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 36/74 PubMed articles for TERF2IP gene (see all 74
):- Identification of human RAP1: implications for telomere evolution. (PubMed id 10850490)1, 2, 3, 4 Li B.... de Lange T. (2000)
- NMR structure of the hRap1 Myb motif reveals a canonical three-helix bundle lacking the positive surface charge typical of Myb DNA-binding domains. (PubMed id 11545594)1, 3, 4 Hanaoka S....Nishimura Y. (2001)
- Shelterin: the protein complex that shapes and safeguards human telomeres. (PubMed id 16166375)1, 3, 4 de Lange T. (2005)
- Telosome, a mammalian telomere-associated complex formed by multiple telomeric proteins. (PubMed id 15383534)1, 3, 4 Liu D....Songyang Z. (2004)
- TIN2 binds TRF1 and TRF2 simultaneously and stabilizes the TRF2 complex on telomeres. (PubMed id 15316005)1, 3, 4 Ye J.Z....de Lange T. (2004)
- A probability-based approach for high-throughput protein phosphorylation analysis and site localization. (PubMed id 16964243)3, 4 Beausoleil S.A.... Gygi S.P. (2006)
- Large-scale cDNA transfection screening for genes related to cancer development and progression. (PubMed id 15498874)3, 4 Wan D....Gu J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)3, 4 Ota T....Sugano S. (2004)
- Large-scale characterization of HeLa cell nuclear phosphoproteins. (PubMed id 15302935)3, 4 Beausoleil S.A....Gygi S.P. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Rap1 affects the length and heterogeneity of human telomeres. (PubMed id 14565979)1, 3 Li B. and de Lange T. (2003)
- The human Rap1 protein complex and modulation of telomere length. (PubMed id 15100233)1, 3 O'Connor M.S....Songyang Z. (2004)
- A RAP1/TRF2 complex inhibits nonhomologous end-joining at human telomeric DNA ends. (PubMed id 17499040)1, 3 Bae N.S. and Baumann P. (2007)
- The cAMP/Epac1/Rap1 pathway in pancreatic carcinoma. (PubMed id 18580452)3 Lorenz R....Weber C.K. (2008)
- Cell motility in chronic lymphocytic leukemia: defective Rap1 and alphaLbeta2 activation by chemokine. (PubMed id 18922916)3 Till K.J....Cawley J.C. (2008)
- Zinc finger protein overexpressed in colon carcinoma interacts with the telomeric protein hRap1. (PubMed id 15838871)3 Antoine K.... Goubin G. (2005)
- Relationship between Rap1 protein phosphorylation and regulation of Ca2+ transport in platelets: a new approach. (PubMed id 7654184)1 Magnier C....Enouf J. (1995)
- Telomere binding of the Rap1 protein is required for meiosis in fission yeast. (PubMed id 11676924)1 Chikashige Y. and Hiraoka Y. (2001)
- Separation of transcriptional activation and silencing functions of the RAP1-encoded repressor/activator protein 1: isolation of viable mutants affecting both silencing and telomere length. (PubMed id 1881914)1 Sussel L. and Shore D. (1991)
- Telomere repeat binding factors TRF1, TRF2, and hRAP1 modulate replication of Epstein-Barr virus OriP. (PubMed id 14581536)1 Deng Z....Lieberman P.M. (2003)
- Alterations in the rap1 signaling pathway are common in human gliomas. (PubMed id 9380414)1 Gutmann D.H....Guha A. (1997)
- Rap1 is involved in the signal transduction of myelin-associated glycoprotein. (PubMed id 18049479)1 Taniguchi J....Yamashita T. (2008)
- Expression of MRE11 complex (MRE11, RAD50, NBS1) and hRap1 and its relation with telomere regulation, telomerase activity in human gastric carcinomas. (PubMed id 12007281)1 Matsutani N....Yasui W. (2001)
- Rap1p is a negative regulator of the RAP1 gene. (PubMed id 8660466)1 Graham I.R. and Chambers A. (1996)
- MAP kinase stimulation by cAMP does not require RAP1 but SRC family kinases. (PubMed id 12082090)1 Klinger M....Sexl V. (2002)
- Taz1, Rap1 and Rif1 act both interdependently and independently to maintain telomeres. (PubMed id 16096639)1 Miller K.M....Cooper J.P. (2005)
- Analysis of the RAP1 protein binding to homogeneous telomeric repeats in Saccharomyces castellii. (PubMed id 11816032)1 Wahlin J. and Cohn M. (2002)
- Signaling by ephrinB1 and Eph kinases in platelets promotes Rap1 activation, platelet adhesion, and aggregation via effector pathways that do not require phosphorylation of ephrinB1. (PubMed id 14576067)1 Prevost N....Brass L.F. (2004)
- The telomeric protein Rap1 is conserved in vertebrates and is expressed from a bidirectional promoter positioned between the Rap1 and KARS genes. (PubMed id 14659874)1 Tan M....Price C.M. (2003)
- Activation of Gz attenuates Rap1-mediated differentiation of PC12 cells. (PubMed id 12198116)1 Meng J. and Casey P.J. (2002)
- spRap1 and spRif1, recruited to telomeres by Taz1, are essential for telomere function in fission yeast. (PubMed id 11676925)1 Kanoh J. and Ishikawa F. (2001)
- Phosphorylation of Rap1GAP, a striatally enriched protein, by protein kinase A controls Rap1 activity and dendritic spine morphology. (PubMed id 19218462)1 McAvoy T....Nairn A.C. (2009)
- A diketopiperazine fragment of human serum albumin modulates T-lymphocyte cytokine production through rap1. (PubMed id 18188096)1 Shimonkevitz R....Bar-Or D. (2008)
- TPP1 is a homologue of ciliate TEBP-beta and interacts with POT1 to recruit telomerase. (PubMed id 17237767)1 Xin H....Songyang Z. (2007)
- The number of vertebrate repeats can be regulated at yeast telomeres by Rap1-independent mechanisms. (PubMed id 12660175)1 Brevet V....Gilson E. (2003)
- Clinicopathological and prognostic relevance of Rap1-GAP expression in melanocytic tumors. (PubMed id 9373716)1 Weiss J....Jung E.G. (1997)
|
Search for TERF2IP
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing TERF2IP
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing TERF2IP
(According to HUGE)
About This Section
| -- |
Specialized Databases showing TERF2IP(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for TERF2IP(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for TERF2IP:

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Incremental update: 13 Oct 2009
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