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Aliases for TEN1 Gene

Aliases for TEN1 Gene

  • TEN1, CST Complex Subunit 2 3 5
  • Telomere Length Regulation Protein TEN1 Homolog 3 4
  • Protein Telomeric Pathways With STN1 Homolog 3 4
  • C17orf106 3 4
  • TEN1 Telomerase Capping Complex Subunit Homolog (S. Cerevisiae) 2
  • Telomeric Pathways In Association With Stn1, Number 1 3
  • TEN1 Telomerase Capping Complex Subunit Homolog 3
  • Chromosome 17 Open Reading Frame 106 2
  • TEN1 CST Complex Subunit 2
  • CST Complex Subunit TEN1 3

External Ids for TEN1 Gene

Previous HGNC Symbols for TEN1 Gene

  • C17orf106

Previous GeneCards Identifiers for TEN1 Gene

  • GC17P073978

Summaries for TEN1 Gene

Entrez Gene Summary for TEN1 Gene

  • C17ORF106, or TEN1, appears to function in a telomere-associated complex with STN1 (OBFC1; MIM 613128) and CTC1 (C17ORF68; MIM 613129) (Miyake et al., 2009 [PubMed 19854130]).[supplied by OMIM, Nov 2009]

GeneCards Summary for TEN1 Gene

TEN1 (TEN1, CST Complex Subunit) is a Protein Coding gene. GO annotations related to this gene include single-stranded DNA binding. An important paralog of this gene is TEN1-CDK3.

UniProtKB/Swiss-Prot for TEN1 Gene

  • Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation (PubMed:19854130). However, the CST complex has been shown to be involved in several aspects of telomere replication. The CST complex inhibits telomerase and is involved in telomere length homeostasis; it is proposed to bind to newly telomerase-synthesized 3 overhangs and to terminate telomerase action implicating the association with the ACD:POT1 complex thus interfering with its telomerase stimulation activity. The CST complex is also proposed to be involved in fill-in synthesis of the telomeric C-strand probably implicating recruitment and activation of DNA polymerase alpha (PubMed:22763445). The CST complex facilitates recovery from many forms of exogenous DNA damage; seems to be involved in the re-initiation of DNA replication at repaired forks and/or dormant origins (PubMed:25483097).

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEN1 Gene

Genomics for TEN1 Gene

Regulatory Elements for TEN1 Gene

Enhancers for TEN1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G076002 1.5 Ensembl ENCODE dbSUPER 36.6 +25.3 25250 3.5 FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 TCF12 SLC30A9 ZNF143 TEN1 ACOX1 CDK3 TRIM65 PIR42105
GH17G075995 1.5 Ensembl ENCODE dbSUPER 36.4 +18.0 18049 4.1 HDGF FOXA2 MLX ZFP64 ARID4B DMAP1 ZNF48 YY1 ZNF121 SLC30A9 TEN1 CDK3 MRPS7 ACOX1
GH17G075999 1.1 ENCODE dbSUPER 36.2 +21.3 21304 1.3 HDGF FOXA2 ARID4B ZNF2 ZNF48 ZBTB40 RAD21 RARA GLIS2 HSF1 TEN1 CDK3 ACOX1
GH17G076026 1.9 FANTOM5 Ensembl ENCODE dbSUPER 15.3 +49.0 48973 4.4 HDGF PKNOX1 MLX ARNT ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 NT5C NUP85 UNK ENSG00000266980 CDK3 TEN1 METTL23 MYO15B KCTD2 MFSD11
GH17G076734 2.7 Ensembl ENCODE dbSUPER 10 +758.0 758042 7.8 CREB3L1 MLX AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 UNK MXRA7 ENSG00000267342 ENSG00000267546 CDK3 H3F3B ENSG00000266980 TRIM65 PRCD ENSG00000272386
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TEN1 on UCSC Golden Path with GeneCards custom track

Promoters for TEN1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000098484 -117 2601 MLX CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC SSRP1

Genomic Location for TEN1 Gene

Chromosome:
17
Start:
75,979,217 bp from pter
End:
76,000,586 bp from pter
Size:
21,370 bases
Orientation:
Plus strand

Genomic View for TEN1 Gene

Genes around TEN1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TEN1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TEN1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEN1 Gene

Proteins for TEN1 Gene

  • Protein details for TEN1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86WV5-TEN1L_HUMAN
    Recommended name:
    CST complex subunit TEN1
    Protein Accession:
    Q86WV5
    Secondary Accessions:
    • I3L0C7

    Protein attributes for TEN1 Gene

    Size:
    123 amino acids
    Molecular mass:
    13856 Da
    Quaternary structure:
    • Component of the CST complex, composed of TEN1/C17orf106, CTC1/C17orf68 and STN1; in the complex interacts directly with STN1.
    SequenceCaution:
    • Sequence=AAH47782.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for TEN1 Gene

neXtProt entry for TEN1 Gene

Post-translational modifications for TEN1 Gene

No Post-translational modifications

Other Protein References for TEN1 Gene

No data available for DME Specific Peptides for TEN1 Gene

Domains & Families for TEN1 Gene

Gene Families for TEN1 Gene

Protein Domains for TEN1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TEN1 Gene

Graphical View of Domain Structure for InterPro Entry

Q86WV5

UniProtKB/Swiss-Prot:

TEN1L_HUMAN :
  • Belongs to the TEN1 family.
Family:
  • Belongs to the TEN1 family.
genes like me logo Genes that share domains with TEN1: view

Function for TEN1 Gene

Molecular function for TEN1 Gene

UniProtKB/Swiss-Prot Function:
Component of the CST complex proposed to act as a specialized replication factor promoting DNA replication under conditions of replication stress or natural replication barriers such as the telomere duplex. The CST complex binds single-stranded DNA with high affinity in a sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. Initially the CST complex has been proposed to protect telomeres from DNA degradation (PubMed:19854130). However, the CST complex has been shown to be involved in several aspects of telomere replication. The CST complex inhibits telomerase and is involved in telomere length homeostasis; it is proposed to bind to newly telomerase-synthesized 3 overhangs and to terminate telomerase action implicating the association with the ACD:POT1 complex thus interfering with its telomerase stimulation activity. The CST complex is also proposed to be involved in fill-in synthesis of the telomeric C-strand probably implicating recruitment and activation of DNA polymerase alpha (PubMed:22763445). The CST complex facilitates recovery from many forms of exogenous DNA damage; seems to be involved in the re-initiation of DNA replication at repaired forks and/or dormant origins (PubMed:25483097).

Gene Ontology (GO) - Molecular Function for TEN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003697 single-stranded DNA binding IEA --
GO:0005515 protein binding IPI 19854130
GO:0010521 telomerase inhibitor activity IDA --
GO:0042162 telomeric DNA binding IDA 19854130
genes like me logo Genes that share ontologies with TEN1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TEN1 Gene

Localization for TEN1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEN1 Gene

Nucleus. Chromosome, telomere.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TEN1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for TEN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000784 nuclear chromosome, telomeric region IDA 19854130
GO:0005634 nucleus IDA,IEA 19854130
GO:0005694 chromosome IEA --
GO:1990879 CST complex IEA,ISS --
genes like me logo Genes that share ontologies with TEN1: view

Pathways & Interactions for TEN1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TEN1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016233 telomere capping TAS 22763445
GO:0032211 negative regulation of telomere maintenance via telomerase IDA 22763445
GO:0051974 negative regulation of telomerase activity IDA --
GO:1904356 regulation of telomere maintenance via telomere lengthening IDA --
genes like me logo Genes that share ontologies with TEN1: view

No data available for Pathways by source and SIGNOR curated interactions for TEN1 Gene

Drugs & Compounds for TEN1 Gene

No Compound Related Data Available

Transcripts for TEN1 Gene

mRNA/cDNA for TEN1 Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEN1 Gene

TEN1 telomerase capping complex subunit homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TEN1 Gene

No ASD Table

Relevant External Links for TEN1 Gene

GeneLoc Exon Structure for
TEN1
ECgene alternative splicing isoforms for
TEN1

Expression for TEN1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TEN1 Gene

Protein differential expression in normal tissues from HIPED for TEN1 Gene

This gene is overexpressed in Placenta (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TEN1 Gene



Protein tissue co-expression partners for TEN1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TEN1 Gene:

TEN1

SOURCE GeneReport for Unigene cluster for TEN1 Gene:

Hs.593566

Evidence on tissue expression from TISSUES for TEN1 Gene

  • Eye(4)
  • Spleen(4)
  • Nervous system(3.4)
genes like me logo Genes that share expression patterns with TEN1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TEN1 Gene

Orthologs for TEN1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEN1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TEN1 34 35
  • 98.64 (n)
dog
(Canis familiaris)
Mammalia TEN1 34 35
  • 82.92 (n)
cow
(Bos Taurus)
Mammalia TEN1 35
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ten1 34
  • 77.12 (n)
mouse
(Mus musculus)
Mammalia Ten1 34 16 35
  • 72.6 (n)
oppossum
(Monodelphis domestica)
Mammalia TEN1 35
  • 59 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TEN1 35
  • 59 (a)
OneToOne
chicken
(Gallus gallus)
Aves C18H17ORF106 34 35
  • 65.81 (n)
lizard
(Anolis carolinensis)
Reptilia TEN1 35
  • 56 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ten1 34
  • 59.44 (n)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-89i1.2 34
  • 50.71 (n)
TEN1 35
  • 32 (a)
OneToOne
Species where no ortholog for TEN1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TEN1 Gene

ENSEMBL:
Gene Tree for TEN1 (if available)
TreeFam:
Gene Tree for TEN1 (if available)

Paralogs for TEN1 Gene

Paralogs for TEN1 Gene

(1) SIMAP similar genes for TEN1 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for TEN1 Gene

genes like me logo Genes that share paralogs with TEN1: view

Variants for TEN1 Gene

Sequence variations from dbSNP and Humsavar for TEN1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs777937235 Likely pathogenic 75,978,627(+) CATAA(C/G)GCTGG upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs3760132 Likely benign 75,979,390(+) AGAAA(C/G/T)TGCCC nc-transcript-variant, utr-variant-5-prime
rs145082938 Uncertain significance 75,978,994(+) TCTCG(A/G)GGCTG upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs543914514 Uncertain significance 75,979,259(+) GTGAC(A/T)GCGGC nc-transcript-variant, utr-variant-5-prime
rs575138461 Uncertain significance 75,979,246(+) CTTTG(A/G)CGCGT nc-transcript-variant, utr-variant-5-prime

Variation tolerance for TEN1 Gene

Gene Damage Index Score: 1.51; 29.29% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TEN1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TEN1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TEN1 Gene

Disorders for TEN1 Gene

Relevant External Links for TEN1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TEN1

No disorders were found for TEN1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TEN1 Gene

Publications for TEN1 Gene

  1. RPA-like mammalian Ctc1-Stn1-Ten1 complex binds to single-stranded DNA and protects telomeres independently of the Pot1 pathway. (PMID: 19854130) Miyake Y. … Ishikawa F. (Mol. Cell 2009) 2 3 4 64
  2. Structure of the human telomeric Stn1-Ten1 capping complex. (PMID: 23826127) Bryan C. … Skordalakes E. (PLoS ONE 2013) 3 4 64
  3. The human CST complex is a terminator of telomerase activity. (PMID: 22763445) Chen L.Y. … Lingner J. (Nature 2012) 3 4 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for TEN1 Gene

Sources for TEN1 Gene

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