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TEN1 Gene

protein-coding   GIFtS: 33
GCID: GC17P073978

TEN1 CST Complex Subunit

(Previous names: chromosome 17 open reading frame 106, TEN1 telomerase capping...)
(Previous symbol: C17orf106)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
TEN1 CST Complex Subunit1 2     TEN1 Telomerase Capping Complex Subunit Homolog (S. Cerevisiae)1
C17orf1061 2 3 5     CST Complex Subunit TEN12
Protein Telomeric Pathways With STN1 Homolog2 3     Telomeric Pathways In Association With Stn1, Number 12
Telomere Length Regulation Protein TEN1 Homolog2 3     TEN1 Telomerase Capping Complex Subunit Homolog2
Chromosome 17 Open Reading Frame 1061     

External Ids:    HGNC: 372421   Entrez Gene: 1001349342   Ensembl: ENSG000002579497   OMIM: 6131305   UniProtKB: Q86WV53   

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(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for TEN1 Gene:
C17ORF106, or TEN1, appears to function in a telomere-associated complex with STN1 (OBFC1; MIM 613128) and CTC1
(C17ORF68; MIM 613129) (Miyake et al., 2009 (PubMed 19854130)).(supplied by OMIM, Nov 2009)

GeneCards Summary for TEN1 Gene:
TEN1 (TEN1 CST complex subunit) is a protein-coding gene.

UniProtKB/Swiss-Prot: TEN1L_HUMAN, Q86WV5
Function: Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect
telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a
sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to
telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000017.10  NC_018928.2  NT_010783.16  
Regulatory elements:
   Search for regulatory transcription factor binding sites for TEN1
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat TEN1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 17q25.1   Ensembl cytogenetic band:  17q25.1   HGNC cytogenetic band: 17q25.1

TEN1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TEN1 gene location

GeneLoc information about chromosome 17         GeneLoc Exon Structure

GeneLoc location for GC17P073978:  view genomic region     (about GC identifiers)

Start:
73,975,298 bp from pter      End:
73,996,667 bp from pter
Size:
21,370 bases      Orientation:
plus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for TEN1

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: TEN1L_HUMAN, Q86WV5 (See protein sequence)
Recommended Name: CST complex subunit TEN1  
Size: 123 amino acids; 13856 Da
Subunit: Component of the CST complex, composed of TEN1/C17orf106, CTC1/C17orf68 and STN1/OBFC1. Interacts with
STN1/OBFC1; the interaction is direct
Caution: It is uncertain whether Met-1 or Met-2 is the initiator. Some orthologous sequences cannot be extended
Sequence caution: Sequence=AAH47782.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
1 PDB 3D structure from and Proteopedia for TEN1:
4JOI (3D)    
Secondary accessions: I3L0C7

Explore the universe of human proteins at neXtProt for TEN1: NX_Q86WV5

Explore proteomics data for TEN1 at MOPED


See TEN1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001106795.2  
ENSEMBL proteins: 
 ENSP00000380762   ENSP00000465866   ENSP00000465299   ENSP00000464792   ENSP00000405279  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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ProtoNet protein and cluster: Q86WV5

UniProtKB/Swiss-Prot: TEN1L_HUMAN, Q86WV5
Similarity: Belongs to the TEN1 family


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: TEN1L_HUMAN, Q86WV5
Function: Component of the CST complex, a complex that binds to single-stranded DNA and is required to protect
telomeres from DNA degradation. The CST complex binds single-stranded DNA with high affinity in a
sequence-independent manner, while isolated subunits bind DNA with low affinity by themselves. In addition to
telomere protection, the CST complex has probably a more general role in DNA metabolism at non-telomeric sites

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding IEA--
GO:0005515protein binding IPI19854130
     
Find genes that share ontologies with TEN1           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
TEN1L_HUMAN, Q86WV5: Nucleus. Chromosome, telomere

Gene Ontology (GO): 3 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0000784nuclear chromosome, telomeric region IDA19854130
GO:0005634nucleus IDA19854130
GO:0070188Stn1-Ten1 complex ISS--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for TEN1

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

2 Interacting proteins for TEN1 (Q86WV51 ENSP000004052794) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
OBFC1Q9H6681EBI-2562799,EBI-746930
POT1ENSP000003502494STRING: ENSP00000350249
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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for TEN1 gene: 
NM_001113324.2  

Unigene Cluster for TEN1:

TEN1 telomerase capping complex subunit homolog (S. cerevisiae)
Hs.593566  [show with all ESTs]
Unigene Representative Sequence: BQ060094
6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000397640 ENST00000588202 ENST00000590676 ENST00000586891 ENST00000585710
ENST00000416485
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Additional mRNA sequence: 

BC047782.1 BX648576.1 FJ790671.1 

7 DOTS entries:

DT.92434871  DT.455141  DT.452082  DT.302659  DT.410755  DT.95164072  DT.100025740 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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TEN1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GAGGGTTCCA
TEN1 Expression
About this image

TEN1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

TEN1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.593566
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for TEN1 gene from Selected species (see all 11)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ten11 , 5 RIKEN cDNA 2310004N24 gene5
TEN1 telomerase capping complex subunit1
72.6(n)1
64.41(a)1
  11 (81.00 cM)5
695351  NM_027107.11  NP_081383.11 
 1161988555 
chicken
(Gallus gallus)
Aves C18H17ORF1061 chromosome 18 open reading frame, human C17orf106 65.81(n)
61.54(a)
  100529060  NM_001199845.1  NP_001186774.1 
lizard
(Anolis carolinensis)
Reptilia TEN16
TEN1 CST complex subunit
56(a)
1 ↔ 1
2(113322083-113329722)
tropical clawed frog
(Xenopus tropicalis)
Amphibia ten11 TEN1 CST complex subunit 59.44(n)
53.33(a)
  100379818  XM_002939989.2  XP_002940035.1 
zebrafish
(Danio rerio)
Actinopterygii si:ch211-89i1.21 si:ch211-89i1.2 50.71(n)
43.59(a)
  336811  XM_005166167.1  XP_005166224.1 


ENSEMBL Gene Tree for TEN1 (if available)
TreeFam Gene Tree for TEN1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for TEN1 gene
1 SIMAP similar gene for TEN1 using alignment to 5 protein entries:     TEN1L_HUMAN (see all proteins):
C8orf44

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1 Pseudogenes.org Pseudogene for TEN1
PGOHUM00000236658


(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Structural Variations
     Database of Genomic Variants (DGV) 3 variations for TEN1:    About this table    
Variant IDTypeSubtypePubMed ID
nsv908826CNV Loss21882294
nsv908825CNV Loss21882294
nsv908824CNV Loss21882294

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 613130    OMIM disorders: --


Find genes that share disorders with TEN1           About GenesLikeMe


Export disorders for TEN1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for TEN1 gene, integrated from 10 sources (see all 12):
(articles sorted by number of sources associating them with TEN1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. RPA-like mammalian Ctc1-Stn1-Ten1 complex binds to single-stranded DNA and protects telomeres independently of the Pot1 pathway. (PubMed id 19854130)1, 2, 3 Miyake Y.... Ishikawa F. (Mol. Cell 2009)
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
  3. Human TEN1 maintains telomere integrity and functions in genome-wide replication restart. (PubMed id 24025336)1 Kasbek C....Price C.M. (J. Biol. Chem. 2013)
  4. Structure of the human telomeric Stn1-Ten1 capping complex. (PubMed id 23826127)1 Bryan C....Skordalakes E. (PLoS ONE 2013)
  5. The human CST complex is a terminator of telomerase activity. (PubMed id 22763445)1 Chen L.Y....Lingner J. (Nature 2012)
  6. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R.... Peters J.M. (Science 2010)
  7. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (BMC Genomics 2007)
  8. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
  9. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. (PubMed id 16625196)2 Zody M.C.... Nusbaum C. (Nature 2006)
  10. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 100134934 HGNC: 37242 Ensembl:ENSG00000257949 euGenes: HUgn100134934 ECgene: TEN1
H-InvDB: TEN1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for TEN1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for TEN1 gene:
Search GeneIP for patents involving TEN1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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 Novus Tissue Slides
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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