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Aliases for TEDDM1 Gene

Aliases for TEDDM1 Gene

  • Transmembrane Epididymal Protein 1 2 3
  • Human Epididymis-Specific Protein 9 3 4
  • Putative Membrane Protein HE9 2 3
  • Transmembrane Protein 45C 2 3
  • Epididymal Protein 9 2 3
  • HE9 3 4
  • TMEM45C 3
  • EDDM9 3
  • Epdd1 3

External Ids for TEDDM1 Gene

Summaries for TEDDM1 Gene

GeneCards Summary for TEDDM1 Gene

TEDDM1 (Transmembrane Epididymal Protein 1) is a Protein Coding gene. An important paralog of this gene is TMEM45B.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TEDDM1 Gene

Genomics for TEDDM1 Gene

Genomic Location for TEDDM1 Gene

Start:
182,398,117 bp from pter
End:
182,400,616 bp from pter
Size:
2,500 bases
Orientation:
Minus strand

Genomic View for TEDDM1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TEDDM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TEDDM1 Gene

Regulatory Elements for TEDDM1 Gene

Transcription factor binding sites by QIAGEN in the TEDDM1 gene promoter:

Proteins for TEDDM1 Gene

  • Protein details for TEDDM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5T9Z0-TEDM1_HUMAN
    Recommended name:
    Transmembrane epididymal protein 1
    Protein Accession:
    Q5T9Z0
    Secondary Accessions:
    • Q8IVJ0

    Protein attributes for TEDDM1 Gene

    Size:
    273 amino acids
    Molecular mass:
    31315 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TEDDM1 Gene

Proteomics data for TEDDM1 Gene at MOPED

Post-translational modifications for TEDDM1 Gene

No Post-translational modifications

Other Protein References for TEDDM1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TEDDM1 Gene

Domains for TEDDM1 Gene

Protein Domains for TEDDM1 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TEDM1_HUMAN
Family:
  • Belongs to the TMEM45 family.:
    • Q5T9Z0
genes like me logo Genes that share domains with TEDDM1: view

No data available for Gene Families for TEDDM1 Gene

Function for TEDDM1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TEDDM1 Gene

Localization for TEDDM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TEDDM1 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TEDDM1 Gene COMPARTMENTS Subcellular localization image for TEDDM1 gene
Compartment Confidence
plasma membrane 3

Gene Ontology (GO) - Cellular Components for TEDDM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with TEDDM1: view

Pathways for TEDDM1 Gene

SuperPathways for TEDDM1 Gene

No Data Available

Interacting Proteins for TEDDM1 Gene

Gene Ontology (GO) - Biological Process for TEDDM1 Gene

None

No data available for Pathways by source for TEDDM1 Gene

Transcripts for TEDDM1 Gene

mRNA/cDNA for TEDDM1 Gene

(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TEDDM1 Gene

Transmembrane epididymal protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TEDDM1 Gene

No ASD Table

Relevant External Links for TEDDM1 Gene

GeneLoc Exon Structure for
TEDDM1
ECgene alternative splicing isoforms for
TEDDM1

Expression for TEDDM1 Gene

mRNA expression in normal human tissues for TEDDM1 Gene

mRNA differential expression in normal tissues according to GTEx for TEDDM1 Gene

This gene is overexpressed in Testis (7.3).

SOURCE GeneReport for Unigene cluster for TEDDM1 Gene Hs.156977

genes like me logo Genes that share expressions with TEDDM1: view

Orthologs for TEDDM1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TEDDM1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC469606 36
  • 98.78 (n)
  • 97.44 (a)
TEDDM1 37
  • 96 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TEDDM1 37
  • 61 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 64 (a)
OneToMany
-- 37
  • 67 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm5531 36
  • 81.57 (n)
  • 71.97 (a)
Gm5531 37
  • 62 (a)
OneToMany
Teddm1 16
Teddm1 37
  • 61 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia TEDDM1 37
  • 26 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia LOC684709 36
  • 79.34 (n)
  • 71.48 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 25 (a)
OneToOne
Species with no ortholog for TEDDM1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TEDDM1 Gene

ENSEMBL:
Gene Tree for TEDDM1 (if available)
TreeFam:
Gene Tree for TEDDM1 (if available)

Paralogs for TEDDM1 Gene

Paralogs for TEDDM1 Gene

Pseudogenes.org Pseudogenes for TEDDM1 Gene

genes like me logo Genes that share paralogs with TEDDM1: view

Variants for TEDDM1 Gene

Sequence variations from dbSNP and Humsavar for TEDDM1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1925829 -- 182,401,639(+) AACAA(A/G)CTGCT upstream-variant-2KB
rs2038891 -- 182,398,413(+) AGGAA(A/G)AACCT utr-variant-3-prime
rs4652708 -- 182,401,474(+) TTCTG(A/T)AACAG upstream-variant-2KB
rs6424853 -- 182,398,758(+) GTAAT(A/G)AAATG utr-variant-3-prime
rs6424854 -- 182,402,188(+) tactc(C/T)atagg upstream-variant-2KB

Relevant External Links for TEDDM1 Gene

HapMap Linkage Disequilibrium report
TEDDM1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TEDDM1 Gene

Disorders for TEDDM1 Gene

No disorders were found for TEDDM1 Gene.

No data available for UniProtKB/Swiss-Prot for TEDDM1 Gene

Publications for TEDDM1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory S.G. … Bentley D.R. (Nature 2006) 4

Products for TEDDM1 Gene

Sources for TEDDM1 Gene

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