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Aliases for TECR Gene

Aliases for TECR Gene

  • Trans-2,3-Enoyl-CoA Reductase 2 3 4
  • GPSN2 3 4 6
  • SC2 3 4 6
  • TER 3 4 6
  • Synaptic Glycoprotein SC2 3 4
  • Glycoprotein, Synaptic 2 2 3
  • MRT14 3 6
  • Very-Long-Chain Enoyl-CoA Reductase 3
  • EC 1.3.1.38 63
  • EC 1.3.1.93 4
  • EC 1.3.1 63

External Ids for TECR Gene

Previous Symbols for TECR Gene

  • SC2
  • GPSN2

Summaries for TECR Gene

Entrez Gene Summary for TECR Gene

  • This gene encodes a multi-pass membrane protein that resides in the endoplasmic reticulum, and belongs to the steroid 5-alpha reductase family. The elongation of microsomal long and very long chain fatty acid consists of 4 sequential reactions. This protein catalyzes the final step, reducing trans-2,3-enoyl-CoA to saturated acyl-CoA. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Apr 2011]

GeneCards Summary for TECR Gene

TECR (Trans-2,3-Enoyl-CoA Reductase) is a Protein Coding gene. Diseases associated with TECR include mental retardation, autosomal recessive 14 and tinea pedis. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include oxidoreductase activity, acting on the CH-CH group of donors. An important paralog of this gene is TECRL.

UniProtKB/Swiss-Prot for TECR Gene

  • Catalyzes the last of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of 2 carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme reduces the trans-2,3-enoyl-CoA fatty acid intermediate to an acyl-CoA that can be further elongated by entering a new cycle of elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators.

Gene Wiki entry for TECR Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TECR Gene

Genomics for TECR Gene

Genomic Location for TECR Gene

Start:
14,517,085 bp from pter
End:
14,565,980 bp from pter
Size:
48,896 bases
Orientation:
Plus strand

Genomic View for TECR Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TECR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TECR Gene

No data available for Regulatory Elements for TECR Gene

Proteins for TECR Gene

  • Protein details for TECR Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZ01-TECR_HUMAN
    Recommended name:
    Very-long-chain enoyl-CoA reductase
    Protein Accession:
    Q9NZ01
    Secondary Accessions:
    • B2RD55
    • O75350
    • Q6IBB2
    • Q9BWK3
    • Q9Y6P0

    Protein attributes for TECR Gene

    Size:
    308 amino acids
    Molecular mass:
    36034 Da
    Quaternary structure:
    • Interacts with ELOVL1 and LASS2.

    Three dimensional structures from OCA and Proteopedia for TECR Gene

    Alternative splice isoforms for TECR Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TECR Gene

Proteomics data for TECR Gene at MOPED

Selected DME Specific Peptides for TECR Gene

Post-translational modifications for TECR Gene

Other Protein References for TECR Gene

Domains for TECR Gene

Suggested Antigen Peptide Sequences for TECR Gene

Graphical View of Domain Structure for InterPro Entry

Q9NZ01

UniProtKB/Swiss-Prot:

TECR_HUMAN
Family:
  • Belongs to the steroid 5-alpha reductase family.:
    • Q9NZ01
genes like me logo Genes that share domains with TECR: view

No data available for Gene Families for TECR Gene

Function for TECR Gene

Molecular function for TECR Gene

UniProtKB/Swiss-Prot CatalyticActivity: A very-long-chain acyl-CoA + NADP(+) = a very-long-chain trans-2,3-dehydroacyl-CoA + NADPH.
UniProtKB/Swiss-Prot Function: Catalyzes the last of the four reactions of the long-chain fatty acids elongation cycle. This endoplasmic reticulum-bound enzymatic process, allows the addition of 2 carbons to the chain of long- and very long-chain fatty acids/VLCFAs per cycle. This enzyme reduces the trans-2,3-enoyl-CoA fatty acid intermediate to an acyl-CoA that can be further elongated by entering a new cycle of elongation. Thereby, it participates to the production of VLCFAs of different chain lengths that are involved in multiple biological processes as precursors of membrane lipids and lipid mediators.

Enzyme Numbers (IUBMB) for TECR Gene

Gene Ontology (GO) - Molecular Function for TECR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEA --
genes like me logo Genes that share ontologies with TECR: view

miRNA for TECR Gene

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TECR Gene

Localization for TECR Gene

Subcellular locations from UniProtKB/Swiss-Prot for TECR Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TECR Gene COMPARTMENTS Subcellular localization image for TECR gene
Compartment Confidence
endoplasmic reticulum 5
cytosol 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for TECR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA 21630459
GO:0005737 cytoplasm --
GO:0005783 endoplasmic reticulum IDA --
GO:0005789 endoplasmic reticulum membrane TAS --
GO:0016021 integral component of membrane --
genes like me logo Genes that share ontologies with TECR: view

Pathways for TECR Gene

genes like me logo Genes that share pathways with TECR: view

UniProtKB/Swiss-Prot Q9NZ01-TECR_HUMAN

  • Pathway: Lipid metabolism; fatty acid biosynthesis.

Gene Ontology (GO) - Biological Process for TECR Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006629 lipid metabolic process --
GO:0019432 triglyceride biosynthetic process TAS --
GO:0030497 fatty acid elongation IDA 12482854
GO:0035338 long-chain fatty-acyl-CoA biosynthetic process TAS --
GO:0042761 very long-chain fatty acid biosynthetic process IDA 12482854
genes like me logo Genes that share ontologies with TECR: view

Compounds for TECR Gene

(1) HMDB Compounds for TECR Gene

Compound Synonyms Cas Number PubMed IDs
Stearoyl-CoA
  • Octadecanoyl-CoA
362-66-3
genes like me logo Genes that share compounds with TECR: view

Transcripts for TECR Gene

Unigene Clusters for TECR Gene

Trans-2,3-enoyl-CoA reductase:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TECR Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b · 3c ^ 4 ^ 5a · 5b ^ 6 ^ 7 ^ 8a · 8b
SP1: - - -
SP2: - -
SP3:
SP4:

Relevant External Links for TECR Gene

GeneLoc Exon Structure for
TECR
ECgene alternative splicing isoforms for
TECR

Expression for TECR Gene

mRNA expression in normal human tissues for TECR Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TECR Gene

SOURCE GeneReport for Unigene cluster for TECR Gene Hs.515642

mRNA Expression by UniProt/SwissProt for TECR Gene

Q9NZ01-TECR_HUMAN
Tissue specificity: Expressed in most tissues tested. Highly expressed in skeletal muscle.
genes like me logo Genes that share expressions with TECR: view

No data available for mRNA differential expression in normal tissues for TECR Gene

Orthologs for TECR Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TECR Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TECR 35
  • 99.35 (n)
  • 99.35 (a)
TECR 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia TECR 35
  • 93.83 (n)
  • 99.03 (a)
TECR 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TECR 35
  • 93.72 (n)
  • 99.35 (a)
TECR 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tecr 35
  • 89.72 (n)
  • 96.75 (a)
Tecr 16
Tecr 36
  • 97 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TECR 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TECR 36
  • 82 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tecr 35
  • 89.07 (n)
  • 97.4 (a)
chicken
(Gallus gallus)
Aves TECR 35
  • 68.53 (n)
  • 75.66 (a)
TECR 36
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TECR 36
  • 91 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia gpsn2-prov 35
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.9089 35
tecr 35
  • 78.25 (n)
  • 90.58 (a)
zebrafish
(Danio rerio)
Actinopterygii gpsn2 35
tecra 36
  • 67 (a)
OneToMany
tecrb 35
  • 78.35 (n)
  • 85.39 (a)
tecrb 36
  • 85 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010714 35
  • 59.48 (n)
  • 54.21 (a)
fruit fly
(Drosophila melanogaster)
Insecta Sc2 35
  • 61.33 (n)
  • 54.33 (a)
Sc2 36
  • 53 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea art-1 35
  • 58.39 (n)
  • 53.64 (a)
art-1 36
  • 53 (a)
OneToMany
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER215W 35
  • 51.54 (n)
  • 38.05 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TSC13 35
  • 43.53 (n)
  • 34.71 (a)
TSC13 36
  • 29 (a)
OneToMany
TSC13 38
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C04367g 35
  • 46.49 (n)
  • 37.72 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons CER10 35
  • 49.52 (n)
  • 42.5 (a)
rice
(Oryza sativa)
Liliopsida Os01g0150000 35
  • 51.48 (n)
  • 41.1 (a)
bread mold
(Neurospora crassa)
Ascomycetes NCU03362 35
  • 52.98 (n)
  • 36.99 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC646.07c 35
  • 50.07 (n)
  • 43.62 (a)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.7956 36
  • 62 (a)
OneToMany
Species with no ortholog for TECR:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TECR Gene

ENSEMBL:
Gene Tree for TECR (if available)
TreeFam:
Gene Tree for TECR (if available)

Paralogs for TECR Gene

Paralogs for TECR Gene

Selected SIMAP similar genes for TECR Gene using alignment to 10 proteins:

Pseudogenes.org Pseudogenes for TECR Gene

genes like me logo Genes that share paralogs with TECR: view

Variants for TECR Gene

Sequence variations from dbSNP and Humsavar for TECR Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs754192 -- 14,560,025(-) GTAAG(A/C)CCGGG intron-variant
rs891089 -- 14,563,423(-) CCTGC(A/G)GAGTG intron-variant
rs930090 -- 14,556,605(-) TCCAG(C/T)TCCTG intron-variant
rs1609865 -- 14,560,576(-) AGGGG(A/C)CAGAA intron-variant
rs1802169 -- 14,564,284(+) ATCTT(C/T)AAGAA reference, synonymous-codon, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TECR Gene

Variant ID Type Subtype PubMed ID
dgv625e199 CNV Deletion 23128226

Relevant External Links for TECR Gene

HapMap Linkage Disequilibrium report
TECR
Human Gene Mutation Database (HGMD)
TECR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TECR Gene

Disorders for TECR Gene

(1) OMIM Diseases for TECR Gene (610057)

UniProtKB/Swiss-Prot

TECR_HUMAN
  • Mental retardation, autosomal recessive 14 (MRT14) [MIM:614020]: A disorder characterized by significantly below average general intellectual functioning associated with impairments in adaptive behavior and manifested during the developmental period. {ECO:0000269 PubMed:21212097}. Note=The disease is caused by mutations affecting the gene represented in this entry.

(1) University of Copenhagen DISEASES for TECR Gene

Relevant External Links for TECR

Human Genome Epidemiology (HuGE) Navigator
TECR
genes like me logo Genes that share disorders with TECR: view

Publications for TECR Gene

  1. Identification of two mammalian reductases involved in the two-carbon fatty acyl elongation cascade. (PMID: 12482854) Moon Y.-A. … Horton J.D. (J. Biol. Chem. 2003) 2 3 4
  2. Identification of genes expressed in human CD34(+) hematopoietic stem/progenitor cells by expressed sequence tags and efficient full- length cDNA cloning. (PMID: 9653160) Mao M. … Chen Z. (Proc. Natl. Acad. Sci. U.S.A. 1998) 2 3 4
  3. ELOVL1 production of C24 acyl-CoAs is linked to C24 sphingolipid synthesis. (PMID: 20937905) Ohno Y. … Kihara A. (Proc. Natl. Acad. Sci. U.S.A. 2010) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for TECR Gene

Sources for TECR Gene

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