TECPR1 Gene
protein-coding GIFtS: 45
GCID: GC07M097843
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tectonin beta-propeller repeat containing 1
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Aliases
for TECPR1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Tectonin Beta-Propeller Repeat Containing 11 2 | | KIAA13581 3 | | DKFZP434B03351 | | FLJ234191 | | FLJ905931 | | Tectonin Beta-Propeller Repeat-Containing Protein 12 |
Export aliases for TECPR1 gene to outside databasesPrevious GC identifers: GC07M097684 GC07M092446 |
Summaries
for TECPR1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for TECPR1:
This gene encodes a tethering factor involved in autophagy. The encoded protein is found at autolysosomes, and isinvolved in targeting protein aggregates, damaged mitochondria, and bacterial pathogens for autophagy (provided byRefSeq, Nov 2012)
UniProtKB/Swiss-Prot: TCPR1_HUMAN, Q7Z6L1Function: Tethering factor involved in autophagy. Involved in autophagosome maturation by promoting the autophagosomefusion with lysosomes: acts by associating with both the ATG5-ATG12 conjugate and phosphatidylinositol-3-phosphate(PtdIns(3)P) present at the surface of autophagosomes. Also involved in selective autophagy against bacterialpathogens, by being required for phagophore/preautophagosomal structure biogenesis and maturation
|
Genomic Views
for TECPR1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007933.15 NT_079595.2
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the TECPR1 gene promoter:
TBP NCX/Ncx CUTL1 Arnt Max PPAR-gamma1 FAC1 TFIID PPAR-gamma2 c-Myc
Other transcription factors
Search SABiosciences Chromatin IP Primers for TECPR1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TECPR1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7q21.3 Ensembl cytogenetic band: 7q21.3 HGNC cytogenetic band: 7q21.3TECPR1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M097843: view genomic region
(about GC identifiers)
Start:
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97,843,936 bp from pter |
End:
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97,881,563 bp from pter |
Size:
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37,628 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 97,170,912-97,206,345 |
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Proteins
for TECPR1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: TCPR1_HUMAN, Q7Z6L1 (See
protein sequence)Recommended Name: Tectonin beta-propeller repeat-containing protein 1 Size: 1165 amino acids; 129696 Da
Subunit: Interacts with ATG5; the interaction is direct. Interacts with WIPI2. Interacts with the ATG5-ATG12 conjugate,the interaction is however mutually exclusive with ATG16, since it does not interact with ATG12-ATG5-ATG16 complex
Subcellular location: Cytoplasmic vesicle, autophagosome membrane. Lysosome membrane. Note=Localizes to Lysosomemembranes, and binds PtdIns(3)P at the surface of autophagosome. Localizes to autolysosomes, a vesicle formed by thefusion between autophagosomes and lysosomes
Secondary accessions: A8KAD1 B3KPZ1 C9J024 F5GX57 Q96EB0 Q9P2I9 Q9UFR6Alternative splicing: 4 isoforms: Q7Z6L1-1 Q7Z6L1-2 Q7Z6L1-3 Q7Z6L1-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TECPR1: NX_Q7Z6L1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q7Z6L1
TECPR1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_056210.1
ENSEMBL proteins: ENSP00000404923 ENSP00000407471 ENSP00000412675 ENSP00000396076 ENSP00000369121 ENSP00000441121
Human Recombinant Protein Products for TECPR1:
Gene Ontology (GO): 4 cellular component terms (GO ID links to tree view): About this table
TECPR1 for ontologies About GeneDecksing
TECPR1 Antibody Products:
Assay Products for TECPR1: |
Protein
Domains /
Families
for TECPR1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
TECPR1 for domains About GeneDecksing
5 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q7Z6L1ProtoNet protein and cluster: Q7Z6L1 3 Blocks protein families: IPB001849 Pleckstrin-like IPB006614 Dysferlin IPB006624 Beta-propeller repeat TECPR
UniProtKB/Swiss-Prot: TCPR1_HUMAN, Q7Z6L1Domain: The PH domain mediates the binding to phosphatidylinositol-3-phosphate (PtdIns(3)P). While full-length proteinis unable to bind PtdIns(3)P in vitro, it is assumed that the binding to the ATG5-ATG12 conjugate exposes the PHdomain, allowing the association with PtdIns(3)P (PubMed:22342342)Similarity: Belongs to the TECPR1 familySimilarity: Contains 1 PH domainSimilarity: Contains 9 TECPR repeats |
Function
for TECPR1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: TCPR1_HUMAN, Q7Z6L1Function: Tethering factor involved in autophagy. Involved in autophagosome maturation by promoting the autophagosomefusion with lysosomes: acts by associating with both the ATG5-ATG12 conjugate and phosphatidylinositol-3-phosphate(PtdIns(3)P) present at the surface of autophagosomes. Also involved in selective autophagy against bacterialpathogens, by being required for phagophore/preautophagosomal structure biogenesis and maturation Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005515 | protein binding |
IPI | -- | | GO:0032266 | phosphatidylinositol-3-phosphate binding |
IDA | -- |
TECPR1 for ontologies About GeneDecksing
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TECPR1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TECPR1 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
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Synthesis Service for TECPR1 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TECPR1 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TECPR1 |
|
Pathways & Interactions
for TECPR1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Apoptosis and Autophagy | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Cell Signaling Technology (CST) Pathway for TECPR1
TECPR1 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TECPR1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 12)
5/235 Interacting proteins for TECPR1 (Q7Z6L11, 3 ENSP000004049234) via UniProtKB, MINT, STRING, and/or I2D (see all 235)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000046 | autophagic vacuole fusion |
IMP | -- | | GO:0006914 | autophagy |
IDA | -- |
TECPR1 for ontologies About GeneDecksing
|
Drugs & Compounds
for TECPR1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for TECPR1
Search CenterWatch for drugs/clinical trials and news about TECPR1 / TCPR1
|
Transcripts
for TECPR1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for TECPR1 gene: NM_015395.2 Unigene Cluster for TECPR1: Tectonin beta-propeller repeat containing 1 Hs.592281 [show with all ESTs]Unigene Representative Sequence: NM_01539518/19 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 19): ENST00000447648(uc003upg.3) ENST00000490842 ENST00000463402 ENST00000485716
ENST00000462511 ENST00000474915 ENST00000479975 ENST00000476659 ENST00000479911
ENST00000483740 ENST00000471397 ENST00000463648 ENST00000472845 ENST00000423128
ENST00000415086 ENST00000420697 ENST00000488667 ENST00000379795
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for TECPR1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for TECPR1 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: TECPR1 (NM_015395) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TECPR1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TECPR1 |
Additional cDNA sequence: AB037779.1 AK027072.1 AK057048.1 AK057618.1 AK075074.1 AK292996.1 AL117495.1 BC012529.2 BC053591.1 10 DOTS entries: DT.108826 DT.100752287 DT.100721618 DT.100752285 DT.95139381 DT.121050234 DT.121050257 DT.121050356 DT.99949757 DT.121050263 24/128 AceView cDNA sequences (see all 128): AI129711 CB266686 AB037779 BC012529 BM677431 BX954629 AI632431 NM_015395 AI420450 AI871183 AI969609 BQ956423 AW272594 CD514435 BU161142 BC053591 BM662816 BM452283 BM910478 BQ448449 AW160792 BU615847 BM689969 BE280183
GeneLoc Exon Structure
|
Expression
for TECPR1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| TECPR1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TTGGTGAGGC
About this image
See TECPR1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for TECPR1
SOURCE GeneReport for Unigene cluster: Hs.592281
SABiosciences Custom PCR Arrays for TECPR1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for TECPR1
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat TECPR1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TECPR1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat TECPR1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TECPR1 |
Orthologs
for TECPR1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for TECPR1 gene from 7/18 species (see all 18) About this table
ENSEMBL Gene Tree for TECPR1 (if available)
TreeFam Gene Tree for TECPR1 (if available) |
Paralogs
for TECPR1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for TECPR1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for TECPR1 (97843936 - 97881563 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for TECPR1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TECPR1 |
|
Disorders
/ Diseases
for TECPR1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 TECPR1 for disorders About MalaCards
TECPR1 for disorders About GeneDecksing
OMIM gene information: 614781
OMIM disorders: --
Export disorders for TECPR1 gene to outside databases
|
Publications
for TECPR1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for TECPR1 gene, integrated from 9 sources (see all 12):
(articles sorted by number of sources associating them with TECPR1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A mammalian autophagosome maturation mechanism mediated by TECPR1 and the Atg12-Atg5 conjugate. (PubMed id 22342342)1, 2 Chen D.... Zhong Q. (2012)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Human chromosome 7: DNA sequence and biology. (PubMed id 12690205)1, 2 Scherer S.W.... Tsui L.-C. (2003)
- Prediction of the coding sequences of unidentified human genes. XVI. The complete sequences of 150 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10718198)1, 2 Nagase T.... Ohara O. (2000)
- A Tecpr1-dependent selective autophagy pathway targets bacterial pathogens. (PubMed id 21575909)2 Ogawa M....Sasakawa C. (2011)
- The role of Tecpr1 in selective autophagy as a cargo r eceptor. (PubMed id 21795850)1 Ogawa M. and Sasakawa C. (2011)
- Network organization of the human autophagy system. (PubMed id 20562859)1 Behrends C....Harper J.W. (2010)
- A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (2008)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
|
External Searches for TECPR1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing TECPR1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing TECPR1 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing TECPR1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for TECPR1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for TECPR1 gene:
Search GeneIP for patents involving TECPR1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for TECPR1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| | Antibodies & Assays for TECPR1 |
| | | | Search Tocris compounds for TECPR1 |
| |  |  |  |  | | | | |
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 | | | TECPR1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TECPR1 |
|  |  |  |  | | | | ThermoFisher Antibody for TECPR1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat TECPR1 |
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