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Aliases for TDRG1 Gene

Subcategory (RNA class) for TDRG1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for TDRG1 Gene

  • Testis Development Related 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 532 2 3
  • Testis Development-Related Protein 1 3
  • Testis Development Related Protein 1 3
  • LincRNA-NR_024015 3
  • LINC00532 3

External Ids for TDRG1 Gene

Previous GeneCards Identifiers for TDRG1 Gene

  • GC06P040456
  • GC06P040303
  • GC06P040862

Summaries for TDRG1 Gene

GeneCards Summary for TDRG1 Gene

TDRG1 (Testis Development Related 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for TDRG1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDRG1 Gene

Genomics for TDRG1 Gene

Regulatory Elements for TDRG1 Gene

Enhancers for TDRG1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H040396 0.8 ENCODE 12.5 +61.7 61734 0.9 ESRRA NFIB ZSCAN4 SIN3A BMI1 ZBTB40 ZNF664 E2F1 CTBP1 GATA3 TDRG1 RNU6-250P GC06P041726
GH06H040398 0.5 ENCODE 13.2 +64.1 64103 0.2 ZNF217 HCFC1 SUZ12 ETS1 THAP11 TDRG1 RNU6-250P GC06P041726
GH06H040387 0.3 FANTOM5 12.5 +52.3 52321 0.2 RNU6-250P TDRG1 GC06P041726
GH06H040419 0.4 ENCODE 8.4 +84.6 84591 0.7 HLF REST TDRG1 RNU6-250P ENSG00000236075
GH06H039890 0.6 dbSUPER 4.6 -442.8 -442806 4.1 CTCF ZNF654 TAL1 REST RAD21 NCOR1 ZNF143 SMC3 HNF4A PRDM4 LOC100505635 MOCS1 TDRG1 ENSG00000281969
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TDRG1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TDRG1 Gene

Genomic Locations for TDRG1 Gene
44,939 bases
Plus strand

Genomic View for TDRG1 Gene

Genes around TDRG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TDRG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TDRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDRG1 Gene

Proteins for TDRG1 Gene

  • Protein details for TDRG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Testis development-related protein 1
    Protein Accession:

    Protein attributes for TDRG1 Gene

    100 amino acids
    Molecular mass:
    10472 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TDRG1 Gene

Post-translational modifications for TDRG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TDRG1 Gene

Domains & Families for TDRG1 Gene

Gene Families for TDRG1 Gene

Protein Domains for TDRG1 Gene


Suggested Antigen Peptide Sequences for TDRG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TDRG1: view

No data available for UniProtKB/Swiss-Prot for TDRG1 Gene

Function for TDRG1 Gene

Phenotypes From GWAS Catalog for TDRG1 Gene

Phenotypes for TDRG1 Gene

GenomeRNAi human phenotypes for TDRG1:
genes like me logo Genes that share phenotypes with TDRG1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TDRG1 Gene

Localization for TDRG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TDRG1 Gene


Gene Ontology (GO) - Cellular Components for TDRG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with TDRG1: view

No data available for Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for TDRG1 Gene

Pathways & Interactions for TDRG1 Gene

SuperPathways for TDRG1 Gene

No Data Available

Interacting Proteins for TDRG1 Gene

Gene Ontology (GO) - Biological Process for TDRG1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IEA --
genes like me logo Genes that share ontologies with TDRG1: view

No data available for Pathways by source and SIGNOR curated interactions for TDRG1 Gene

Drugs & Compounds for TDRG1 Gene

No Compound Related Data Available

Transcripts for TDRG1 Gene

mRNA/cDNA for TDRG1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TDRG1 Gene

Testis development related 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TDRG1 Gene

No ASD Table

Relevant External Links for TDRG1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for TDRG1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TDRG1 Gene

mRNA differential expression in normal tissues according to GTEx for TDRG1 Gene

This gene is overexpressed in Testis (x45.5).

NURSA nuclear receptor signaling pathways regulating expression of TDRG1 Gene:


SOURCE GeneReport for Unigene cluster for TDRG1 Gene:


mRNA Expression by UniProt/SwissProt for TDRG1 Gene:

Tissue specificity: Expressed in the testis but not in any other non-reproductive tissues (at protein level). Mainly located in spermatogenic cells in seminiferous tubules of adult testis.
genes like me logo Genes that share expression patterns with TDRG1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TDRG1 Gene

Orthologs for TDRG1 Gene

Evolution for TDRG1 Gene

Gene Tree for TDRG1 (if available)
Gene Tree for TDRG1 (if available)

No data available for Orthologs for TDRG1 Gene

Paralogs for TDRG1 Gene

No data available for Paralogs for TDRG1 Gene

Variants for TDRG1 Gene

Sequence variations from dbSNP and Humsavar for TDRG1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1001232168 -- 40,377,004(+) GCATA(A/C)ATAGC upstream-variant-2KB
rs1001683674 -- 40,376,673(+) ATGAG(A/C)CTTGA upstream-variant-2KB
rs1001896246 -- 40,377,591(+) TTCCA(C/T)TGGCC upstream-variant-2KB
rs1001948590 -- 40,377,324(+) GCTTC(A/T)TTTGA upstream-variant-2KB
rs1002896093 -- 40,378,783(+) CCCAG(A/G)ACCCA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TDRG1 Gene

Variant ID Type Subtype PubMed ID
nsv5273 CNV deletion 18451855
esv2763989 CNV loss 21179565

Relevant External Links for TDRG1 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TDRG1 Gene

Disorders for TDRG1 Gene

Relevant External Links for TDRG1

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for TDRG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TDRG1 Gene

Publications for TDRG1 Gene

  1. Characterization of a novel human testis-specific gene: testis developmental related gene 1 (TDRG1). (PMID: 22123530) Jiang X … Tang Y (The Tohoku journal of experimental medicine 2011) 2 3 4 60
  2. The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk. (PMID: 24595048) Fan QH … Zhang LY (PloS one 2014) 2 3 60
  3. Expression and localization of testis developmental related gene 1 (TDRG1) in human spermatozoa. (PMID: 25749352) Chen H … Tang Y (The Tohoku journal of experimental medicine 2015) 3 60
  4. [Expression of human testis development related gene 1 in testicular cancer detected by tissue microarray]. (PMID: 21243750) Chen HY … Tang YX (Zhonghua nan ke xue = National journal of andrology 2010) 3 60
  5. [Molecular cloning of a novel human testis-specific gene TDRG1]. (PMID: 19403381) Yin GM … Zeng Q (Nan fang yi ke da xue xue bao = Journal of Southern Medical University 2009) 2 60

Products for TDRG1 Gene

Sources for TDRG1 Gene

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