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Aliases for TDRG1 Gene

Subcategory (RNA class) for TDRG1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for TDRG1 Gene

  • Testis Development Related 1 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 532 2 3
  • LINC00532 3 6
  • Testis Development Related Protein 1 3
  • LincRNA-NR_024015 3

External Ids for TDRG1 Gene

Summaries for TDRG1 Gene

GeneCards Summary for TDRG1 Gene

TDRG1 (Testis Development Related 1 (Non-Protein Coding)) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDRG1 Gene

Genomics for TDRG1 Gene

Genomic Location for TDRG1 Gene

Start:
40,334,954 bp from pter
End:
40,379,892 bp from pter
Size:
44,939 bases
Orientation:
Plus strand

Genomic View for TDRG1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TDRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDRG1 Gene

Regulatory Elements for TDRG1 Gene

Proteins for TDRG1 Gene

  • Protein details for TDRG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3Y452-TDRG1_HUMAN
    Recommended name:
    Testis development-related protein 1
    Protein Accession:
    Q3Y452
    Secondary Accessions:

    Protein attributes for TDRG1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10472 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TDRG1 Gene

Proteomics data for TDRG1 Gene at MOPED

Post-translational modifications for TDRG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TDRG1 Gene

Domains for TDRG1 Gene

Protein Domains for TDRG1 Gene

ProtoNet:
genes like me logo Genes that share domains with TDRG1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for TDRG1 Gene

Function for TDRG1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TDRG1 Gene

Localization for TDRG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TDRG1 Gene

Cytoplasm.

No data available for Gene Ontology (GO) - Cellular Components for TDRG1 Gene

Pathways for TDRG1 Gene

SuperPathways for TDRG1 Gene

No Data Available

Interacting Proteins for TDRG1 Gene

Gene Ontology (GO) - Biological Process for TDRG1 Gene

None

No data available for Pathways by source for TDRG1 Gene

Transcripts for TDRG1 Gene

mRNA/cDNA for TDRG1 Gene

(5) Additional mRNA sequences :
(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TDRG1 Gene

Testis development related 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TDRG1 Gene

No ASD Table

Relevant External Links for TDRG1 Gene

GeneLoc Exon Structure for
TDRG1
ECgene alternative splicing isoforms for
TDRG1

Expression for TDRG1 Gene

mRNA expression in normal human tissues for TDRG1 Gene

mRNA differential expression in normal tissues according to GTEx for TDRG1 Gene

This gene is overexpressed in Testis (45.5).

SOURCE GeneReport for Unigene cluster for TDRG1 Gene Hs.180197

mRNA Expression by UniProt/SwissProt for TDRG1 Gene

Q3Y452-TDRG1_HUMAN
Tissue specificity: Expressed in the testis but not in any other non-reproductive tissues (at protein level). Mainly located in spermatogenic cells in seminiferous tubules of adult testis.
genes like me logo Genes that share expressions with TDRG1: view

Orthologs for TDRG1 Gene

Evolution for TDRG1 Gene

ENSEMBL:
Gene Tree for TDRG1 (if available)
TreeFam:
Gene Tree for TDRG1 (if available)

No data available for Orthologs for TDRG1 Gene

Paralogs for TDRG1 Gene

No data available for Paralogs for TDRG1 Gene

Variants for TDRG1 Gene

Sequence variations from dbSNP and Humsavar for TDRG1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs8506 -- 40,379,813(-) TTCTT(A/G)AGCCC nc-transcript-variant
rs9312 -- 40,379,519(-) GGAAG(A/G)CTGAA nc-transcript-variant
rs930250 -- 40,378,174(-) TCCTG(G/T)GTGGG upstream-variant-2KB
rs2033530 -- 40,380,179(-) TCCCA(C/T)TTGAC downstream-variant-500B
rs2033531 -- 40,380,156(-) TGGAT(A/G)TATTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for TDRG1 Gene

Variant ID Type Subtype PubMed ID
nsv5273 CNV Loss 18451855

Relevant External Links for TDRG1 Gene

HapMap Linkage Disequilibrium report
TDRG1

Disorders for TDRG1 Gene

Relevant External Links for TDRG1

Genetic Association Database (GAD)
TDRG1
genes like me logo Genes that share disorders with TDRG1: view

No data available for UniProtKB/Swiss-Prot for TDRG1 Gene

Publications for TDRG1 Gene

  1. Characterization of a novel human testis-specific gene: testis developmental related gene 1 (TDRG1). (PMID: 22123530) Jiang X. … Tang Y. (Tohoku J. Exp. Med. 2011) 2 3 4
  2. The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk. (PMID: 24595048) Fan Q.H. … Zhang L.Y. (PLoS ONE 2014) 2 3
  3. [Molecular cloning of a novel human testis-specific gene TDRG1]. (PMID: 19403381) Yin G.M. … Zeng Q. (Nan Fang Yi Ke Da Xue Xue Bao 2009) 2
  4. The DNA sequence and analysis of human chromosome 6. (PMID: 14574404) Mungall A.J. … Beck S. (Nature 2003) 4
  5. [Expression of human testis development related gene 1 in testicular cancer detected by tissue microarray]. (PMID: 21243750) Chen H.Y. … Tang Y.X. (Zhonghua Nan Ke Xue 2010) 3

Products for TDRG1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TDRG1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TDRG1
    • Block miRNA regulation of TDRG1 using miScript Target Protectors

    Sources for TDRG1 Gene

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