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Aliases for TDRG1 Gene

Subcategory (RNA class) for TDRG1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TDRG1 Gene

  • Testis Development Related 1 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 532 2 3
  • Testis Development-Related Protein 1 3
  • Testis Development Related Protein 1 3
  • LincRNA-NR_024015 3
  • LINC00532 3

External Ids for TDRG1 Gene

Previous GeneCards Identifiers for TDRG1 Gene

  • GC06P040456

Summaries for TDRG1 Gene

GeneCards Summary for TDRG1 Gene

TDRG1 (Testis Development Related 1 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDRG1 Gene

Genomics for TDRG1 Gene

Regulatory Elements for TDRG1 Gene

Genomic Location for TDRG1 Gene

Chromosome:
6
Start:
40,334,954 bp from pter
End:
40,379,892 bp from pter
Size:
44,939 bases
Orientation:
Plus strand

Genomic View for TDRG1 Gene

Genes around TDRG1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TDRG1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TDRG1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDRG1 Gene

Proteins for TDRG1 Gene

  • Protein details for TDRG1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q3Y452-TDRG1_HUMAN
    Recommended name:
    Testis development-related protein 1
    Protein Accession:
    Q3Y452

    Protein attributes for TDRG1 Gene

    Size:
    100 amino acids
    Molecular mass:
    10472 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TDRG1 Gene

Proteomics data for TDRG1 Gene at MOPED

Post-translational modifications for TDRG1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TDRG1 Gene

Domains & Families for TDRG1 Gene

Gene Families for TDRG1 Gene

Protein Domains for TDRG1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TDRG1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TDRG1: view

No data available for UniProtKB/Swiss-Prot for TDRG1 Gene

Function for TDRG1 Gene

Phenotypes for TDRG1 Gene

GenomeRNAi human phenotypes for TDRG1:
genes like me logo Genes that share phenotypes with TDRG1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TDRG1 Gene

Localization for TDRG1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TDRG1 Gene

Cytoplasm.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TDRG1 Gene

Pathways & Interactions for TDRG1 Gene

SuperPathways for TDRG1 Gene

No Data Available

Interacting Proteins for TDRG1 Gene

Gene Ontology (GO) - Biological Process for TDRG1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TDRG1 Gene

Drugs & Compounds for TDRG1 Gene

No Compound Related Data Available

Transcripts for TDRG1 Gene

mRNA/cDNA for TDRG1 Gene

(5) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TDRG1 Gene

Testis development related 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TDRG1 Gene

No ASD Table

Relevant External Links for TDRG1 Gene

GeneLoc Exon Structure for
TDRG1
ECgene alternative splicing isoforms for
TDRG1

Expression for TDRG1 Gene

mRNA expression in normal human tissues for TDRG1 Gene

mRNA differential expression in normal tissues according to GTEx for TDRG1 Gene

This gene is overexpressed in Testis (x45.5).

SOURCE GeneReport for Unigene cluster for TDRG1 Gene Hs.180197

mRNA Expression by UniProt/SwissProt for TDRG1 Gene

Q3Y452-TDRG1_HUMAN
Tissue specificity: Expressed in the testis but not in any other non-reproductive tissues (at protein level). Mainly located in spermatogenic cells in seminiferous tubules of adult testis.
genes like me logo Genes that share expression patterns with TDRG1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression and Protein tissue co-expression partners for TDRG1 Gene

Orthologs for TDRG1 Gene

Evolution for TDRG1 Gene

ENSEMBL:
Gene Tree for TDRG1 (if available)
TreeFam:
Gene Tree for TDRG1 (if available)

No data available for Orthologs for TDRG1 Gene

Paralogs for TDRG1 Gene

No data available for Paralogs for TDRG1 Gene

Variants for TDRG1 Gene

Sequence variations from dbSNP and Humsavar for TDRG1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs2033530 -- 40,380,179(-) TCCCA(C/T)TTGAC downstream-variant-500B
rs2033531 -- 40,380,156(-) TGGAT(A/G)TATTT downstream-variant-500B
rs2436729 -- 40,379,051(-) CATGA(C/T)CACAC intron-variant
rs2304285 -- 40,378,533(-) GCTTC(C/T)GTGGA nc-transcript-variant
rs9380953 -- 40,379,018(+) CCCTT(A/G)TCAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TDRG1 Gene

Variant ID Type Subtype PubMed ID
nsv5273 CNV Loss 18451855

Relevant External Links for TDRG1 Gene

HapMap Linkage Disequilibrium report
TDRG1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TDRG1 Gene

Disorders for TDRG1 Gene

Relevant External Links for TDRG1

Genetic Association Database (GAD)
TDRG1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TDRG1

No disorders were found for TDRG1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TDRG1 Gene

Publications for TDRG1 Gene

  1. Characterization of a novel human testis-specific gene: testis developmental related gene 1 (TDRG1). (PMID: 22123530) Jiang X. … Tang Y. (Tohoku J. Exp. Med. 2011) 2 3 4 67
  2. The has-miR-526b binding-site rs8506G>a polymorphism in the lincRNA-NR_024015 exon identified by GWASs predispose to non-cardia gastric cancer risk. (PMID: 24595048) Fan Q.H. … Zhang L.Y. (PLoS ONE 2014) 2 3
  3. [Expression of human testis development related gene 1 in testicular cancer detected by tissue microarray]. (PMID: 21243750) Chen H.Y. … Tang Y.X. (Zhonghua Nan Ke Xue 2010) 3
  4. [Molecular cloning of a novel human testis-specific gene TDRG1]. (PMID: 19403381) Yin G.M. … Zeng Q. (Nan Fang Yi Ke Da Xue Xue Bao 2009) 2
  5. A germline-specific class of small RNAs binds mammalian Piwi proteins. (PMID: 16751776) Girard A. … Carmell M.A. (Nature 2006) 3

Products for TDRG1 Gene

Sources for TDRG1 Gene

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