TDRD5 Gene
protein-coding GIFtS : 44
GCID: GC01 P179560
tudor domain containing 5
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Aliasesfor TDRD5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Tudor Domain Containing 5 1 2 TUDOR31 2 FLJ348231 RP11-427G13.12 Tudor Domain-Containing Protein 52
Export aliases for TDRD5 gene to outside databases Previous GC identifers: GC01P174993 GC01P176085 GC01P176814 GC01P176800 GC01P176292 GC01P177827 GC01P150787
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Summariesfor TDRD5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: TDRD5_HUMAN, Q8NAT2 Function : Required during spermiogenesis to participate in the repression transposable elements and prevent theirmobilization, which is essential for the germline integrity. Probably acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for chromatoid body (CB) assembly (By similarity)
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Genomic Viewsfor TDRD5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004487.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TDRD5 gene promoter: MAZR POU6F1 (c2) AP-2gamma HNF-1A Egr-2 Ik-2 HNF-1 AP-2beta AP-2alpha AP-2alphaA Other transcription factors Search SABiosciences Chromatin IP Primers for TDRD5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TDRD5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q25.2 Ensembl cytogenetic band: 1q25.2 HGNC cytogenetic band: 1q24.2 TDRD5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P179560: view genomic region
(about GC identifiers )
Start:
179,560,748 bp from pter
End:
179,660,407 bp from pter
Size:
99,660 bases
Orientation:
plus strand
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Proteinsfor TDRD5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TDRD5_HUMAN, Q8NAT2 (See
protein sequence )Recommended Name: Tudor domain-containing protein 5 Size : 981 amino acids; 109737 Da
Subcellular location : Cytoplasm (By similarity). Note=Localizes to chromatoid body (CB) and pi-body (also calledintermitochondrial cementin), 2 cytoplasmic ribonucleoprotein granules involved in RNA processing for spermatogenesis (By similarity)
Sequence caution : Sequence=BAC03815.1; Type=Frameshift; Positions=819;
1 PDB 3D structure from and Proteopedia for TDRD5 :3S93 (3D)
 
Secondary accessions : A1L4G5 B7ZLV0 Q5EBN4 Q5VTV0 Q6ZSK2Alternative splicing : 2 isoforms : Q8NAT2-3 Q8NAT2-1 Explore the universe of human proteins at neXtProt for TDRD5: NX_Q8NAT2 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q8NAT2 TDRD5 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (5 alternative transcripts):
NP_001186014.1 NP_001186018.1 NP_001186020.1 NP_001186021.1 NP_775804.2 ENSEMBL proteins: ENSP00000356586 ENSP00000294848 ENSP00000410744 ENSP00000406052 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
TDRD5 for ontologies About GeneDecksing TDRD5 Antibody Products: Assay Products for TDRD5:
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Protein
Domains / Familiesfor TDRD5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TDRD5 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8NAT2 ProtoNet protein and cluster: Q8NAT2
1 Blocks protein family : IPB008191 Maternal tudor protein UniProtKB/Swiss-Prot: TDRD5_HUMAN, Q8NAT2 Similarity : Belongs to the TDRD5 familySimilarity : Contains 3 HTH OST-type domainsSimilarity : Contains 1 Tudor domain
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Functionfor TDRD5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: TDRD5_HUMAN, Q8NAT2 Function : Required during spermiogenesis to participate in the repression transposable elements and prevent theirmobilization, which is essential for the germline integrity. Probably acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for chromatoid body (CB) assembly (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): TDRD5 (NM_001199092 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TDRD5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TDRD5
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDRD5
Animal Models: Mouse knock-out Tdrd5 tm1Sait for TDRD5 3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Tdrd5) :
TDRD5 for phenotypes About GeneDecksing
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Pathways & Interactionsfor TDRD5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TDRD5 1 Interacting protein for TDRD5 (Q8NAT2 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007286 spermatid development
ISS -- GO:0030719 P granule organization
ISS -- GO:0043046 DNA methylation involved in gamete generation
ISS --
TDRD5 for ontologies About GeneDecksing
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Drugs & Compoundsfor TDRD5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for TDRD5 Search CenterWatch for drugs/clinical trials and news about TDRD5
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Transcriptsfor TDRD5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for TDRD5 gene (5 alternative transcripts): NM_001199085.1 NM_001199089.1 NM_001199091.1 NM_001199092.1 NM_173533.3 Unigene Cluster for TDRD5:
Tudor domain containing 5 Hs.197354 [show with all ESTs ] Unigene Representative Sequence: NM_001199085 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000367614 (uc021pfm.1 ) ENST00000294848 (uc001gnf.2 uc001gnh.2 )ENST00000417329 ENST00000444136 (uc010pnp.2 uc021pfn.1 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5 (see all 6 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): TDRD5 (NM_001199092 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for TDRD5 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TDRD5
Additional cDNA sequence: AK092142.1 AK126889.1 AK127370.1 BC043368.1 BC065707.1 BC089387.1 BC130532.1 BC144058.1
7 DOTS entries : DT.40297531 DT.121345022
DT.95232844 DT.99978871 DT.121345030 DT.121345031 DT.91683930 24/26 AceView cDNA sequences (see all 26 ):
AW452292 BE674279 AI630765 BE217803 AK127370 BC043368 BE673670 NM_173533 AX747378 BI520089 BX112064 AK126889 AW589750 BG055328 AI702961 BC065707 CD557653 AK092142 BU852780 AW341780 AA931671 CD706642 BF335791 BF512009 GeneLoc Exon Structure
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Expression for TDRD5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TDRD5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ACTGATAAAT
About this image TDRD5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See TDRD5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for TDRD5 SOURCE GeneReport for Unigene cluster: Hs.197354 SABiosciences Custom PCR Arrays for TDRD5 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TDRD5Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat TDRD5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TDRD5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TDRD5 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDRD5
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Orthologsfor TDRD5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for TDRD5 gene from 4/14 species (see all 14 ) About this table
ENSEMBL Gene Tree for TDRD5 (if available)TreeFam Gene Tree for TDRD5 (if available)
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Paralogsfor TDRD5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for TDRD5 gene TDRD7 2 TDRKH 2
TDRD5 for paralogs About GeneDecksing
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Genomic Variantsfor TDRD5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TDRD5 (179560748 - 179660407 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 16 variations for TDRD5 4 CNVs : 97567 84682 34739 84683 12 Indels : 44473 74798 74795 74794 43187 97568 84685 65316 84684 74797 74796 84686
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TDRD5
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Disorders
/ Diseasesfor TDRD5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TDRD5 for disorders About GeneDecksing 2 diseases for TDRD5 : About MalaCards essential hypertension hypertension Human Genome Epidemiology (HuGE) Navigator: TDRD5 (3 documents) Export disorders for TDRD5 gene to outside databases
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Publicationsfor TDRD5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TDRD5 gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with TDRD5) Utopia : connect your pdf to the dynamic world of online information
The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414) 1 , 2 Gregory S.G.... Bentley D.R. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) OST-HTH: a novel predicted RNA-binding domain. (PubMed id 20302647) 2 Anantharaman V.... Aravind L. (2010) LOTUS, a new domain associated with small RNA pathways in the germline. (PubMed id 20305267) 2 Callebaut I. and Mornon J.P. (2010) Follow-up of a major linkage peak on chromosome 1 rev eals suggestive QTLs associated with essential hypertension: GenNet study. (PubMed id 19536175) 1 Ehret G.B....Chakravarti A. (2009) Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PubMed id 18519826) 1 Uhl G.R....Lerman C. (2008) Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983) 1 Olsen J.V....Mann M. (2006) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006)
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External Searches for TDRD5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TDRD5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TDRD5 gene
(According to HUGE )
About This Section --
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Specialized Databases showing TDRD5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TDRD5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TDRD5 gene: Search GeneIP for patents involving TDRD5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TDRD5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for TDRD5 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TDRD5 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TDRD5 OriGene Protein Over-expression Lysate for TDRD5 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for TDRD5 OriGene 3'-UTR Clone for TDRD5 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TDRD5 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TDRD5 OriGene Custom Protein Services for TDRD5 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TDRD5 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing TDRD5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat TDRD5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TDRD5 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TDRD5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat TDRD5
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TDRD5 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDRD5
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat TDRD5
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Aliases for TDRD5
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Disorders / Diseases for TDRD5
Domains / Families for TDRD5
Drugs / Compounds for TDRD5
Expression for TDRD5
Function for TDRD5
Genomic Views for TDRD5
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Pathways / Interactions for TDRD5
Products for TDRD5
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