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Aliases for TDRD15 Gene

Aliases for TDRD15 Gene

  • Tudor Domain Containing 15 2 3

External Ids for TDRD15 Gene

Previous GeneCards Identifiers for TDRD15 Gene

  • GC02P021348

Summaries for TDRD15 Gene

GeneCards Summary for TDRD15 Gene

TDRD15 (Tudor Domain Containing 15) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and hydrolase activity, acting on ester bonds. An important paralog of this gene is TDRD6.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDRD15 Gene

Genomics for TDRD15 Gene

Genomic Location for TDRD15 Gene

Start:
21,123,917 bp from pter
End:
21,143,272 bp from pter
Size:
19,356 bases
Orientation:
Plus strand

Genomic View for TDRD15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TDRD15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDRD15 Gene

No data available for Regulatory Elements for TDRD15 Gene

Proteins for TDRD15 Gene

  • Protein details for TDRD15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    B5MCY1-TDR15_HUMAN
    Recommended name:
    Tudor domain-containing protein 15
    Protein Accession:
    B5MCY1
    Secondary Accessions:

    Protein attributes for TDRD15 Gene

    Size:
    1934 amino acids
    Molecular mass:
    221722 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TDRD15 Gene

Proteomics data for TDRD15 Gene at MOPED

Post-translational modifications for TDRD15 Gene

No Post-translational modifications

Other Protein References for TDRD15 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for TDRD15 Gene

Domains for TDRD15 Gene

Gene Families for TDRD15 Gene

HGNC:
  • TDRD :Tudor domain containing

Protein Domains for TDRD15 Gene

Graphical View of Domain Structure for InterPro Entry

B5MCY1

UniProtKB/Swiss-Prot:

TDR15_HUMAN :
  • B5MCY1
Domain:
  • Contains 8 Tudor domains.
genes like me logo Genes that share domains with TDRD15: view

No data available for Suggested Antigen Peptide Sequences for TDRD15 Gene

Function for TDRD15 Gene

Gene Ontology (GO) - Molecular Function for TDRD15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0016788 hydrolase activity, acting on ester bonds --
genes like me logo Genes that share ontologies with TDRD15: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TDRD15 Gene

Localization for TDRD15 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TDRD15 Gene

Pathways for TDRD15 Gene

SuperPathways for TDRD15 Gene

No Data Available

Interacting Proteins for TDRD15 Gene

Gene Ontology (GO) - Biological Process for TDRD15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
genes like me logo Genes that share ontologies with TDRD15: view

No data available for Pathways by source for TDRD15 Gene

Transcripts for TDRD15 Gene

mRNA/cDNA for TDRD15 Gene

(6) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TDRD15 Gene

No ASD Table

Relevant External Links for TDRD15 Gene

GeneLoc Exon Structure for
TDRD15
ECgene alternative splicing isoforms for
TDRD15

Expression for TDRD15 Gene

mRNA expression in normal human tissues for TDRD15 Gene

mRNA differential expression in normal tissues according to GTEx for TDRD15 Gene

This gene is overexpressed in Testis (33.2) and Liver (11.8).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TDRD15 Gene

genes like me logo Genes that share expressions with TDRD15: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for TDRD15 Gene

Orthologs for TDRD15 Gene

This gene was present in the common ancestor of animals.

Orthologs for TDRD15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TDRD15 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TDRD15 36
  • 71 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TDRD15 36
  • 61 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TDRD15 36
  • 49 (a)
OneToOne
chicken
(Gallus gallus)
Aves TDRD15 36
  • 43 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TDRD15 36
  • 44 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii TDRD15 36
  • 27 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta qin 36
  • 14 (a)
ManyToMany
tud 36
  • 12 (a)
ManyToMany
Species with no ortholog for TDRD15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TDRD15 Gene

ENSEMBL:
Gene Tree for TDRD15 (if available)
TreeFam:
Gene Tree for TDRD15 (if available)

Paralogs for TDRD15 Gene

Paralogs for TDRD15 Gene

Pseudogenes.org Pseudogenes for TDRD15 Gene

genes like me logo Genes that share paralogs with TDRD15: view

Variants for TDRD15 Gene

Sequence variations from dbSNP and Humsavar for TDRD15 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs312961 -- 21,126,327(-) ttctc(A/G)aagta upstream-variant-2KB
rs312962 -- 21,126,950(-) tgcaa(A/C)ggtca upstream-variant-2KB
rs312963 -- 21,128,409(-) GGAGG(C/T)AGAGT intron-variant
rs312964 -- 21,132,558(-) attcc(A/C)ctcac intron-variant
rs312965 -- 21,136,956(-) CGGAA(C/T)TCGCA intron-variant

Relevant External Links for TDRD15 Gene

HapMap Linkage Disequilibrium report
TDRD15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TDRD15 Gene

Disorders for TDRD15 Gene

No disorders were found for TDRD15 Gene.

No data available for UniProtKB/Swiss-Prot for TDRD15 Gene

Publications for TDRD15 Gene

  1. LDL-cholesterol concentrations: a genome-wide association study. (PMID: 18262040) Sandhu M.S. … Mooser V. (Lancet 2008) 3
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4

Products for TDRD15 Gene

Sources for TDRD15 Gene

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