L-threonine dehydrogenase
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Aliasesfor TDH gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 8 Aliases L-Threonine Dehydrogenase 1 2 SDR14E1P1 2 FLJ250331 LYRIC5 MAEG15
External Ids: HGNC: 15547 1 Entrez Gene: 157739 2 Ensembl: ENSG00000154316 7 OMIM: 610323 5 UniProtKB: Q8IZJ6 3 ORGUL members: NONCODE:n370150 n385350 n385351
Export aliases for TDH gene to outside databases Previous GC identifers: GC00U990976 GC08P011076 GC08P011242 GC08P011234 GC08P010127
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Summariesfor TDH gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for TDH : This gene appears to be an evolving pseudogene of L-threonine 3-dehydrogenase (TDH). In both prokaryotes and eukaryotes, TDH catalyzes the first of two steps in one of two L-threonine degradation pathways. However, in human, the single gene with sequence similarity to TDH is not capable of encoding a functional TDH protein; the predicted protein lacks most of the C-terminus and parts of the NAD+ binding motif when compared to other species' TDH proteins. This suggests that the human gene is therefore a pseudogene. Transcripts of this gene are found in all tissues and alternatively spliced transcripts have been described. It is not known if these transcripts are translated, or if the possible protein product provides any functional role. (provided by RefSeq, Jul 2008)
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Genomic Viewsfor TDH gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_077531.4 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the TDH gene promoter: GR C/EBPbeta AML1a p53 Ik-3 GATA-1 E47 Hand1 GR-alpha Pax-4a Other transcription factors Search SABiosciences Chromatin IP Primers for TDH Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TDH
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p23.1 Ensembl cytogenetic band: 8p23.1 HGNC cytogenetic band: 8p23.1 TDH Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08P011198: view genomic region
(about GC identifiers )
Start:
11,197,146 bp from pter
End:
11,225,961 bp from pter
Size:
28,816 bases
Orientation:
plus strand
ORGUL member locations:Legend (see complete legend)
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Proteinsfor TDH gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: TDH_HUMAN, Q8IZJ6 (See
protein sequence )Recommended Name: Inactive L-threonine 3-dehydrogenase, mitochondrial precursor Size : 230 amino acids; 25407 Da
Subcellular location : Mitochondrion (By similarity)
Caution : According to PubMed:12361482, the human TDH gene is an expressed pseudogene encoding non-functional truncatedproteins that are unable to make appropriate contacts with the substrates, L-threonine and NAD(+). Although all exons expected to encode a functional L-threonine 3-dehydrogenase of 369 residues are present in the human genome, all transcripts described encode truncated proteins that result from mutations within the gene causing the loss of acceptor splice site preceding exon 4 and exon 6
Secondary accessions : Q8IZJ5 Q96LV6Alternative splicing : 3 isoforms : Q8IZJ6-1 Q8IZJ6-2 Q8IZJ6-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for TDH: NX_Q8IZJ6 TDH Protein expression data from MOPED and PaxDb : --Human Recombinant Protein Products for TDH:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005739 mitochondrion
IEA --
TDH for ontologies About GeneDecksing TDH Antibody Products: Assay Products for TDH:
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Protein
Domains / Familiesfor TDH gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
TDH for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q8IZJ6 ProtoNet protein and cluster: Q8IZJ6
UniProtKB/Swiss-Prot: TDH_HUMAN, Q8IZJ6 Similarity : Belongs to the sugar epimerase family
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Functionfor TDH gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
TDH for ontologies About GeneDecksing Animal Models: In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDH
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Pathways & Interactionsfor TDH gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TDH 1 Interacting protein for TDH (Q8IZJ6 3 ) via UniProtKB, MINT, STRING, and/or I2D About this table Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0044237 cellular metabolic process
IEA --
TDH for ontologies About GeneDecksing
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Drugs & Compoundsfor TDH gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section
TDH for compounds About GeneDecksing Browse Tocris compounds for TDH 2 HMDB Compounds for TDH About this table 4 Novoseek chemical compound relationships for TDH gene About this table
Search CenterWatch for drugs/clinical trials and news about TDH
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Transcriptsfor TDH gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section Unigene Cluster for TDH:
L-threonine dehydrogenase Hs.583896 [show with all ESTs ] Unigene Representative Sequence: AK057762 5 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000525246 (uc003wtt.1 uc003wtq.1 ) ENST00000534302 (uc003wts.1 )ENST00000531764 ENST00000525664 ENST00000326605 Additional cDNA sequence: AJ301562.1 AJ301563.1 AK057762.1 AY101186.1 AY101187.1 BC074983.2 BC080558.1 NR_001578.1 NR_026814.1
7 DOTS entries : DT.97841330 DT.70104426 DT.95103741 DT.91750010 DT.100019866 DT.95265121 DT.99948767
24/43 AceView cDNA sequences (see all 43 ):
BQ059744 BQ062075 BQ063270 BQ055552 BQ642283 BQ057711 AJ301563 AY101186 NR_001578 AJ301562 NM_054017 BQ063907 AI474649 BQ056232 BF953738 BM817654 AY101187 BQ065932 BE267834 BM909520 BI225106 BI224741 BE514180 BM051842 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for TDH About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 SP1 :   -   -               -   -         -     SP2 :               -     -   -             SP3 :               -       -             SP4 :                                
ECgene alternative splicing isoforms for TDH
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Expression for TDH gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section TDH expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: ATATATTCCTAbout this image TDH expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
Genevestigator expression for TDH SOURCE GeneReport for Unigene cluster: Hs.583896 UniProtKB/Swiss-Prot: TDH_HUMAN, Q8IZJ6 Tissue specificity : Expressed in all tissues examined. Detected in most cell types examined, but not observed inendothelial cells, glioma cell lines and some leukemia cell lines SABiosciences Custom PCR Arrays for TDH Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TDHBrowse OriGene validated miRNA SYBR primer pairs Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat TDH Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TDH QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TDH In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDH
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Orthologsfor TDH gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of human and mouse.
Orthologs for TDH gene from 1 species (see representative species ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Tdh5
L-threonine dehydrogenase
--
 
14 (33.31 cM) 63492347
ENSEMBL Gene Tree for TDH (if available)TreeFam Gene Tree for TDH (if available)
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Paralogsfor TDH gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor TDH gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for TDH (11197146 - 11225961 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 17 variations for TDH 1 CNV : 47971 15/16 Inversions (see all 16 ): 37318 37316 37307 37317 37311 37319 37320 37315 37312 37321 37304 37313 37314 37305 37306
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor TDH gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
TDH for disorders About GeneDecksing
OMIM gene information: 610323
OMIM disorders : --10 diseases for TDH : About MalaCards keratolytic winter erythema acalculous cholecystitis congenital diaphragmatic hernia cholecystitis gastroenteritis hernia diarrhea cholera breast cancer leukemia 2 Novoseek disease relationships for TDH gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
gastroenteritis
59.8
1
8126441 (1)
poisoning
25.2
3
15182493 (2), 8593076 (1)
Export disorders for TDH gene to outside databases
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Publicationsfor TDH gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for TDH gene, integrated from 9 sources (see all 42 ): (articles sorted by number of sources associating them with TDH) Utopia : connect your pdf to the dynamic world of online information
The human L-threonine 3-dehydrogenase gene is an expressed pseudogene. (PubMed id 12361482) 1 , 2 , 3, 9 Edgar A.J. (2002) The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726) 1 , 3 Persson B.... Oppermann U. (2009) Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759. (PubMed id 11896452) 1 , 3 Appel S.... Rosenthal A. (2002) DNA sequence and analysis of human chromosome 8. (PubMed id 16421571) 2 Nusbaum C....Lander E.S. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Inhibition and regulation of rat liver L-threonine de hydrogenase by different fatty acids and their derivatives. (PubMed id 11731084) 6 Guerranti R....Marinello E. (2001) Interaction between L-threonine dehydrogenase and aminoacetone synthetase and mechanism of aminoacetone production. (PubMed id 3536927) 1 Tressel T....Davis L. (1986) The thermostable direct hemolysin gene (tdh) of Vibri o hollisae is dissimilar in prevalence to and phylogenetically distant from the tdh genes of other vibrios: implications in the horizontal transfer of the tdh gene. (PubMed id 8871530) 9 Nishibuchi M....Ezaki T. (1996) Detection of a functional insertion sequence responsi ble for deletion of the thermostable direct hemolysin gene (tdh) in Vibrio para haemolyticus. (PubMed id 18598741) 9 Kamruzzaman M....Nishibuchi M. (2008)
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External Searches for TDH gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing TDH gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing TDH gene
(According to HUGE )
About This Section --
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Specialized Databases showing TDH gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for TDH Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for TDH gene: Search GeneIP for patents involving TDH GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor TDH gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies Browse OriGene shRNA RFPs OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for TDH OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for TDH Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits Browse OriGene siRNAs Browse 3'-UTR reporter clones for miRNA target validation Browse OriGene untagged cDNA clones in CMV expression vector OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for TDH Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for TDH OriGene Custom Protein Services for TDH OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat TDH Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TDH QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TDH QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat TDH QIAGEN QuantiFast Probe-based Assays in human , mouse , rat TDH Search QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat TDH
Search Tocris compounds for TDH
TDH Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TDH
Search ThermoFisher Antibodies for TDH
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat TDH
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Aliases for TDH
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Expression for TDH
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