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Aliases for TDGF1 Gene

Aliases for TDGF1 Gene

  • Teratocarcinoma-Derived Growth Factor 1 2 3
  • Epidermal Growth Factor-Like Cripto Protein CR1 3 4
  • Cripto-1 Growth Factor 3 4
  • CRIPTO 3 4
  • CRGF 3 4
  • CR 3

External Ids for TDGF1 Gene

Summaries for TDGF1 Gene

Entrez Gene Summary for TDGF1 Gene

  • This gene encodes an epidermal growth factor-related protein that contains a cripto, FRL-1, and cryptic domain. The encoded protein is an extracellular, membrane-bound signaling protein that plays an essential role in embryonic development and tumor growth. Mutations in this gene are associated with forebrain defects. Pseudogenes of this gene are found on chromosomes 2, 3, 6, 8, 19 and X. Alternate splicing results in multiple transcript variants. [provided by RefSeq, Mar 2010]

GeneCards Summary for TDGF1 Gene

TDGF1 (Teratocarcinoma-Derived Growth Factor 1) is a Protein Coding gene. Diseases associated with TDGF1 include teratocarcinoma and septopreoptic holoprosencephaly. Among its related pathways are L1CAM interactions and NF-KappaB Family Pathway. GO annotations related to this gene include receptor binding and growth factor activity. An important paralog of this gene is CFC1.

UniProtKB/Swiss-Prot for TDGF1 Gene

  • Could play a role in the determination of the epiblastic cells that subsequently give rise to the mesoderm.

Gene Wiki entry for TDGF1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TDGF1 Gene

Genomics for TDGF1 Gene

Genomic Location for TDGF1 Gene

Start:
46,574,555 bp from pter
End:
46,626,543 bp from pter
Size:
51,989 bases
Orientation:
Plus strand

Genomic View for TDGF1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TDGF1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TDGF1 Gene

Regulatory Elements for TDGF1 Gene

Proteins for TDGF1 Gene

  • Protein details for TDGF1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P13385-TDGF1_HUMAN
    Recommended name:
    Teratocarcinoma-derived growth factor 1
    Protein Accession:
    P13385
    Secondary Accessions:
    • Q8TCC1

    Protein attributes for TDGF1 Gene

    Size:
    188 amino acids
    Molecular mass:
    21169 Da
    Quaternary structure:
    • Interacts with the activin type-1 receptor ACVR1B.

neXtProt entry for TDGF1 Gene

Proteomics data for TDGF1 Gene at MOPED

Post-translational modifications for TDGF1 Gene

Other Protein References for TDGF1 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for TDGF1 Gene

Domains for TDGF1 Gene

Protein Domains for TDGF1 Gene

UniProtKB/Swiss-Prot:

TDGF1_HUMAN
Domain:
  • Contains 1 EGF-like domain.:
    • P13385
genes like me logo Genes that share domains with TDGF1: view

No data available for Gene Families for TDGF1 Gene

Function for TDGF1 Gene

Molecular function for TDGF1 Gene

UniProtKB/Swiss-Prot Function: Could play a role in the determination of the epiblastic cells that subsequently give rise to the mesoderm.

Gene Ontology (GO) - Molecular Function for TDGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005102 receptor binding IDA 11909953
GO:0005515 protein binding IPI 12919325
GO:0008083 growth factor activity IDA 12925698
genes like me logo Genes that share ontologies with TDGF1: view
genes like me logo Genes that share phenotypes with TDGF1: view

Animal Models for TDGF1 Gene

MGI Knock Outs for TDGF1:

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for TDGF1 Gene

Localization for TDGF1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TDGF1 Gene

Cell membrane; Lipid-anchor, GPI-anchor.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TDGF1 Gene COMPARTMENTS Subcellular localization image for TDGF1 gene
Compartment Confidence
extracellular 5
plasma membrane 5
golgi apparatus 2
nucleus 2
cytosol 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for TDGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IDA 17720976
GO:0005634 nucleus IEA --
GO:0005737 cytoplasm --
GO:0005794 Golgi apparatus IEA --
GO:0005886 plasma membrane TAS --
genes like me logo Genes that share ontologies with TDGF1: view

Pathways for TDGF1 Gene

genes like me logo Genes that share pathways with TDGF1: view

Pathways by source for TDGF1 Gene

1 Sino Biological pathway for TDGF1 Gene
2 Cell Signaling Technology pathways for TDGF1 Gene
1 BioSystems pathway for TDGF1 Gene

Gene Ontology (GO) - Biological Process for TDGF1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000187 activation of MAPK activity IDA 9013573
GO:0001570 vasculogenesis IEA --
GO:0001701 in utero embryonic development IEA --
GO:0001763 morphogenesis of a branching structure TAS 10070255
GO:0001954 positive regulation of cell-matrix adhesion IEA --
genes like me logo Genes that share ontologies with TDGF1: view

Compounds for TDGF1 Gene

(4) Novoseek inferred chemical compound relationships for TDGF1 Gene

Compound -log(P) Hits PubMed IDs
heparin 5.03 3
threonine 3.58 1
serine 0.166 1
tyrosine 0 1
genes like me logo Genes that share compounds with TDGF1: view

Transcripts for TDGF1 Gene

Unigene Clusters for TDGF1 Gene

Teratocarcinoma-derived growth factor 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TDGF1 Gene

No ASD Table

Relevant External Links for TDGF1 Gene

GeneLoc Exon Structure for
TDGF1
ECgene alternative splicing isoforms for
TDGF1

Expression for TDGF1 Gene

mRNA expression in normal human tissues for TDGF1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TDGF1 Gene

This gene is overexpressed in Spleen (10.3), Kidney - Cortex (9.7), Adrenal Gland (4.7), and Ovary (4.5).

SOURCE GeneReport for Unigene cluster for TDGF1 Gene Hs.385870

mRNA Expression by UniProt/SwissProt for TDGF1 Gene

P13385-TDGF1_HUMAN
Tissue specificity: Preferentially expressed in gastric and colorectal carcinomas than in their normal counterparts. Expressed in breast and lung.
genes like me logo Genes that share expressions with TDGF1: view

Orthologs for TDGF1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TDGF1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TDGF1 36
  • 99.29 (n)
  • 98.4 (a)
TDGF1 37
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 78 (a)
OneToMany
TDGF1 36
  • 83.79 (n)
  • 80.11 (a)
TDGF1 37
  • 80 (a)
OneToMany
dog
(Canis familiaris)
Mammalia TDGF1 36
  • 82.63 (n)
  • 73.05 (a)
mouse
(Mus musculus)
Mammalia Tdgf1 36
  • 79.19 (n)
  • 72.12 (a)
Tdgf1 16
Tdgf1 37
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tdgf1 36
  • 78.22 (n)
  • 68.75 (a)
lizard
(Anolis carolinensis)
Reptilia -- 37
  • 25 (a)
ManyToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia tdgf1.1 36
  • 51.57 (n)
  • 42.45 (a)
zebrafish
(Danio rerio)
Actinopterygii cripto 36
oep 37
  • 27 (a)
OneToMany
Species with no ortholog for TDGF1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TDGF1 Gene

ENSEMBL:
Gene Tree for TDGF1 (if available)
TreeFam:
Gene Tree for TDGF1 (if available)

Paralogs for TDGF1 Gene

Paralogs for TDGF1 Gene

Selected SIMAP similar genes for TDGF1 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TDGF1: view

Variants for TDGF1 Gene

Sequence variations from dbSNP and Humsavar for TDGF1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs1049667 -- 46,582,200(+) AAGAA(A/C)TCCCC utr-variant-3-prime
rs1804497 -- 46,582,161(+) AGGGC(A/G)AGTTT utr-variant-3-prime
rs2280413 -- 46,580,303(-) AATGT(C/T)AAATA intron-variant
rs2280414 -- 46,579,725(-) TAAGA(A/G)CAGAT intron-variant
rs2293021 -- 46,579,627(-) CTCTG(C/T)GCCTT intron-variant

Relevant External Links for TDGF1 Gene

HapMap Linkage Disequilibrium report
TDGF1
Human Gene Mutation Database (HGMD)
TDGF1

No data available for Structural Variations from Database of Genomic Variants (DGV) for TDGF1 Gene

Disorders for TDGF1 Gene

(1) University of Copenhagen DISEASES for TDGF1 Gene

(19) Novoseek inferred disease relationships for TDGF1 Gene

Disease -log(P) Hits PubMed IDs
cystadenoma mucinous 51 2
carcinoma embryonal 46.3 2
colon carcinoma 45.4 4
colon tumor 42.6 2
mammary tumor 42.4 4

Relevant External Links for TDGF1

Genetic Association Database (GAD)
TDGF1
Human Genome Epidemiology (HuGE) Navigator
TDGF1
genes like me logo Genes that share disorders with TDGF1: view

No data available for UniProtKB/Swiss-Prot for TDGF1 Gene

Publications for TDGF1 Gene

  1. The CRIPTO/FRL-1/CRYPTIC (CFC) domain of human Cripto. (PMID: 12919325) Foley S.F. … Wen D. (Eur. J. Biochem. 2003) 3 4 23
  2. Isolation and characterization of the CRIPTO autosomal gene and its X-linked related sequence. (PMID: 1882841) Dono R. … Persico M.G. (Am. J. Hum. Genet. 1991) 2 3 4
  3. Molecular characterization of a gene of the 'EGF family' expressed in undifferentiated human NTERA2 teratocarcinoma cells. (PMID: 2792079) Ciccodicola A. … Persico M.G. (EMBO J. 1989) 3 4
  4. Cripto binds transforming growth factor beta (TGF-beta) and inhibits TGF-beta signaling. (PMID: 17030617) Gray P.C. … Vale W. (Mol. Cell. Biol. 2006) 3 23
  5. Activin A, activin receptor type II, nodal, and cripto mRNA are expressed by eutopic and ectopic endometrium in women with ovarian endometriosis. (PMID: 19386982) Torres P.B. … Petraglia F. (Reprod Sci 2009) 3 23

Products for TDGF1 Gene

Sources for TDGF1 Gene

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