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Aliases for TCTN2 Gene

Aliases for TCTN2 Gene

  • Tectonic Family Member 2 2 3 5
  • C12orf38 3 4
  • TECT2 3 4
  • Chromosome 12 Open Reading Frame 38 2
  • Meckel Syndrome, Type 8 2
  • Tectonic-2 3
  • JBTS24 3
  • MKS8 3

External Ids for TCTN2 Gene

Previous HGNC Symbols for TCTN2 Gene

  • C12orf38

Previous GeneCards Identifiers for TCTN2 Gene

  • GC12P122723
  • GC12P124155
  • GC12P121116

Summaries for TCTN2 Gene

Entrez Gene Summary for TCTN2 Gene

  • This gene encodes a type I membrane protein that belongs to the tectonic family. Studies in mice suggest that this protein may be involved in hedgehog signaling, and essential for ciliogenesis. Mutations in this gene are associated with Meckel syndrome type 8. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for TCTN2 Gene

TCTN2 (Tectonic Family Member 2) is a Protein Coding gene. Diseases associated with TCTN2 include Meckel Syndrome, Type 8 and Joubert Syndrome 24. Among its related pathways are Organelle biogenesis and maintenance and Regulation of PLK1 Activity at G2/M Transition.

UniProtKB/Swiss-Prot for TCTN2 Gene

  • Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for hedgehog signaling transduction (By similarity).

Additional gene information for TCTN2 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCTN2 Gene

Genomics for TCTN2 Gene

GeneHancer (GH) Regulatory Elements for TCTN2 Gene

Promoters and enhancers for TCTN2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12I123670 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 581.2 +0.3 279 1.4 ATF1 ARID4B SIN3A YY1 GLIS2 ZNF207 FOS ATF7 SP3 SP5 TCTN2 ENSG00000255839
GH12I123711 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 43.9 +42.3 42325 4.7 HDGF PKNOX1 ARNT ARID4B SIN3A DMAP1 ZBTB7B POLR2B ZNF143 ZNF263 ATP6V0A2 TCTN2 DDX55 DNAH10 EIF2B1 C12orf65 KMT5A ENSG00000270130 LOC101927415 RPL27P12
GH12I124504 Promoter/Enhancer 2.2 FANTOM5 Ensembl ENCODE dbSUPER 42.7 +845.5 845491 24.5 HDGF PKNOX1 FOXA2 ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 EIF2B1 DDX55 TCTN2 NCOR2 GTF2H3 LOC101927415 ATP6V0A2 ENSG00000270130 ENSG00000270061 DHX37
GH12I122919 Enhancer 1.1 ENCODE dbSUPER 53 -751.1 -751106 1.5 ZNF493 ZNF529 ZFP64 ZEB1 ZNF155 ZNF121 ZNF213 ZNF354C ZNF138 KLF7 EIF2B1 RSRC2 ZCCHC8 DDX55 ATP6V0A2 LOC101927415 ENSG00000235423 C12orf65 TCTN2 KNTC1
GH12I123760 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE 25 +90.2 90239 2.5 CTCF MXI1 SAP130 ARID4B BACH1 SIN3A RAD21 ZNF48 POLR2A ZNF207 DNAH10 TCTN2 LOC101927415 MPHOSPH9 LOC105370044 ATP6V0A2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TCTN2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the TCTN2 gene promoter:

Genomic Locations for TCTN2 Gene

Genomic Locations for TCTN2 Gene
chr12:123,671,113-123,708,405
(GRCh38/hg38)
Size:
37,293 bases
Orientation:
Plus strand
chr12:124,155,660-124,192,948
(GRCh37/hg19)

Genomic View for TCTN2 Gene

Genes around TCTN2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCTN2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCTN2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCTN2 Gene

Proteins for TCTN2 Gene

  • Protein details for TCTN2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96GX1-TECT2_HUMAN
    Recommended name:
    Tectonic-2
    Protein Accession:
    Q96GX1
    Secondary Accessions:
    • A8K7Y8
    • B3KPW5
    • Q9H966

    Protein attributes for TCTN2 Gene

    Size:
    697 amino acids
    Molecular mass:
    76871 Da
    Quaternary structure:
    • Part of the tectonic-like complex (also named B9 complex).
    SequenceCaution:
    • Sequence=BAB14370.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TCTN2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TCTN2 Gene

Post-translational modifications for TCTN2 Gene

  • Ubiquitination at posLast=443443
  • Glycosylation at isoforms=2146, posLast=156156, isoforms=2372, posLast=391391, isoforms=2497, and posLast=636636

Other Protein References for TCTN2 Gene

No data available for DME Specific Peptides for TCTN2 Gene

Domains & Families for TCTN2 Gene

Gene Families for TCTN2 Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted membrane proteins

Protein Domains for TCTN2 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TCTN2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96GX1

UniProtKB/Swiss-Prot:

TECT2_HUMAN :
  • Belongs to the tectonic family.
Family:
  • Belongs to the tectonic family.
genes like me logo Genes that share domains with TCTN2: view

Function for TCTN2 Gene

Molecular function for TCTN2 Gene

UniProtKB/Swiss-Prot Function:
Component of the tectonic-like complex, a complex localized at the transition zone of primary cilia and acting as a barrier that prevents diffusion of transmembrane proteins between the cilia and plasma membranes. Required for hedgehog signaling transduction (By similarity).

Phenotypes From GWAS Catalog for TCTN2 Gene

genes like me logo Genes that share phenotypes with TCTN2: view

Human Phenotype Ontology for TCTN2 Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for TCTN2 Gene

MGI Knock Outs for TCTN2:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Transcription Factor Targets and HOMER Transcription for TCTN2 Gene

Localization for TCTN2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCTN2 Gene

Membrane; Single-pass type I membrane protein. Cytoplasm, cytoskeleton, cilium basal body. Note=Localizes at the transition zone, a region between the basal body and the ciliary axoneme. {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TCTN2 gene
Compartment Confidence
plasma membrane 5
cytoskeleton 3
golgi apparatus 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Golgi apparatus (2)
  • Vesicles (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TCTN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
GO:0036038 MKS complex ISS --
genes like me logo Genes that share ontologies with TCTN2: view

Pathways & Interactions for TCTN2 Gene

genes like me logo Genes that share pathways with TCTN2: view

Pathways by source for TCTN2 Gene

Gene Ontology (GO) - Biological Process for TCTN2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007224 smoothened signaling pathway ISS --
GO:0030030 cell projection organization IEA --
GO:0060271 cilium assembly ISS --
GO:0097711 ciliary basal body-plasma membrane docking TAS --
genes like me logo Genes that share ontologies with TCTN2: view

No data available for SIGNOR curated interactions for TCTN2 Gene

Drugs & Compounds for TCTN2 Gene

No Compound Related Data Available

Transcripts for TCTN2 Gene

Unigene Clusters for TCTN2 Gene

Tectonic family member 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCTN2 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19
SP1: - - -
SP2:
SP3: -
SP4:

Relevant External Links for TCTN2 Gene

GeneLoc Exon Structure for
TCTN2
ECgene alternative splicing isoforms for
TCTN2

Expression for TCTN2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCTN2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for TCTN2 Gene

This gene is overexpressed in Testis (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TCTN2 Gene



Protein tissue co-expression partners for TCTN2 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TCTN2 Gene:

TCTN2

SOURCE GeneReport for Unigene cluster for TCTN2 Gene:

Hs.167165

Phenotype-based relationships between genes and organs from Gene ORGANizer for TCTN2 Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • endocrine
  • immune
  • integumentary
  • lymphatic
  • nervous
  • reproductive
  • respiratory
  • skeletal muscle
  • skeleton
  • urinary
Organs:
Head and neck:
  • brain
  • cerebellum
  • cerebrospinal fluid
  • cheek
  • chin
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • forehead
  • head
  • jaw
  • larynx
  • lip
  • mandible
  • maxilla
  • meninges
  • mouth
  • neck
  • nose
  • olfactory bulb
  • outer ear
  • skull
  • tongue
  • tooth
Thorax:
  • aorta
  • clavicle
  • diaphragm
  • esophagus
  • heart
  • heart valve
  • lung
Abdomen:
  • abdominal wall
  • adrenal gland
  • biliary tract
  • duodenum
  • intestine
  • kidney
  • large intestine
  • liver
  • pancreas
  • small intestine
  • spleen
  • stomach
Pelvis:
  • anus
  • pelvis
  • penis
  • placenta
  • rectum
  • testicle
  • ureter
  • urethra
  • urinary bladder
  • uterus
  • vagina
  • vulva
Limb:
  • ankle
  • arm
  • digit
  • femur
  • fibula
  • finger
  • foot
  • forearm
  • hand
  • humerus
  • lower limb
  • radius
  • shin
  • shoulder
  • thigh
  • tibia
  • toe
  • ulna
  • upper limb
General:
  • blood
  • blood vessel
  • hair
  • peripheral nerve
  • peripheral nervous system
  • skin
  • spinal column
  • spinal cord
  • vertebrae
genes like me logo Genes that share expression patterns with TCTN2: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Evidence on tissue expression from TISSUES for TCTN2 Gene

Orthologs for TCTN2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TCTN2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCTN2 33 34
  • 98.05 (n)
dog
(Canis familiaris)
Mammalia TCTN2 33 34
  • 84.33 (n)
cow
(Bos Taurus)
Mammalia TCTN2 33 34
  • 83.18 (n)
mouse
(Mus musculus)
Mammalia Tctn2 33 16 34
  • 74.9 (n)
rat
(Rattus norvegicus)
Mammalia Tctn2 33
  • 74.52 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TCTN2 34
  • 66 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TCTN2 34
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves TCTN2 33 34
  • 60.31 (n)
tropical clawed frog
(Silurana tropicalis)
Amphibia tctn2 33
  • 54.89 (n)
zebrafish
(Danio rerio)
Actinopterygii tctn2 33 34
  • 48.17 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 29 (a)
OneToOne
Species where no ortholog for TCTN2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TCTN2 Gene

ENSEMBL:
Gene Tree for TCTN2 (if available)
TreeFam:
Gene Tree for TCTN2 (if available)

Paralogs for TCTN2 Gene

No data available for Paralogs for TCTN2 Gene

Variants for TCTN2 Gene

Sequence variations from dbSNP and Humsavar for TCTN2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs111574617 likely-benign, Joubert syndrome, Meckel-Gruber syndrome, not specified 123,697,201(+) G/C intron_variant
rs112158562 conflicting-interpretations-of-pathogenicity, benign, likely-benign, not specified, Joubert syndrome, Meckel-Gruber syndrome, Cutis laxa, recessive 123,707,660(+) T/C coding_sequence_variant, intron_variant, synonymous_variant
rs112214860 likely-benign, Cutis laxa, recessive 123,707,780(+) C/T 3_prime_UTR_variant
rs112525270 likely-benign, Meckel-Gruber syndrome, Cutis laxa, recessive, Joubert syndrome 123,708,125(+) T/C 3_prime_UTR_variant, downstream_transcript_variant, genic_downstream_transcript_variant
rs113292231 likely-benign, Joubert syndrome, Cutis laxa, recessive, Meckel-Gruber syndrome 123,707,800(+) C/T 3_prime_UTR_variant

Structural Variations from Database of Genomic Variants (DGV) for TCTN2 Gene

Variant ID Type Subtype PubMed ID
dgv1566n100 CNV gain 25217958
dgv1567n100 CNV gain 25217958
dgv1568n100 CNV loss 25217958
dgv2926n54 CNV gain 21841781
dgv309e214 CNV gain 21293372
esv2759918 CNV gain 17122850
esv35148 CNV gain 17911159
nsv1051385 CNV gain 25217958
nsv1052065 CNV gain+loss 25217958
nsv442292 CNV gain 18776908
nsv455733 CNV gain 19166990
nsv519344 CNV gain 19592680
nsv524660 CNV gain 19592680
nsv832534 CNV loss 17160897

Variation tolerance for TCTN2 Gene

Residual Variation Intolerance Score: 10.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.60; 30.87% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TCTN2 Gene

Human Gene Mutation Database (HGMD)
TCTN2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCTN2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCTN2 Gene

Disorders for TCTN2 Gene

MalaCards: The human disease database

(7) MalaCards diseases for TCTN2 Gene - From: HGMD, OMIM, ClinVar, GTR, Orphanet, DISEASES, and GeneCards

- elite association - COSMIC cancer census association via MalaCards
Search TCTN2 in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

TECT2_HUMAN
  • Joubert syndrome 24 (JBTS24) [MIM:616654]: A form of Joubert syndrome, a disorder presenting with cerebellar ataxia, oculomotor apraxia, hypotonia, neonatal breathing abnormalities and psychomotor delay. Neuroradiologically, it is characterized by cerebellar vermian hypoplasia/aplasia, thickened and reoriented superior cerebellar peduncles, and an abnormally large interpeduncular fossa, giving the appearance of a molar tooth on transaxial slices (molar tooth sign). Additional variable features include retinal dystrophy, renal disease, liver fibrosis, and polydactyly. {ECO:0000269 PubMed:21565611, ECO:0000269 PubMed:25118024}. Note=The disease is caused by mutations affecting the gene represented in this entry.
  • Meckel syndrome 8 (MKS8) [MIM:613885]: A disorder characterized by a combination of renal cysts and variably associated features including developmental anomalies of the central nervous system (typically encephalocele), hepatic ductal dysplasia and cysts, and polydactyly. {ECO:0000269 PubMed:21462283}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for TCTN2

genes like me logo Genes that share disorders with TCTN2: view

No data available for Genatlas for TCTN2 Gene

Publications for TCTN2 Gene

  1. A TCTN2 mutation defines a novel Meckel Gruber syndrome locus. (PMID: 21462283) Shaheen R … Alkuraya FS (Human mutation 2011) 2 3 4 58
  2. Mapping the NPHP-JBTS-MKS protein network reveals ciliopathy disease genes and pathways. (PMID: 21565611) Sang L … Jackson PK (Cell 2011) 3 4 58
  3. Tectonic, a novel regulator of the Hedgehog pathway required for both activation and inhibition. (PMID: 16357211) Reiter JF … Skarnes WC (Genes & development 2006) 3 4 58
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58

Products for TCTN2 Gene

Sources for TCTN2 Gene

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