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Aliases for TCP11X2 Gene

Aliases for TCP11X2 Gene

  • T-Complex 11 Family, X-Linked 2 2 3 5

External Ids for TCP11X2 Gene

Previous GeneCards Identifiers for TCP11X2 Gene

  • GC0XM101632

Summaries for TCP11X2 Gene

GeneCards Summary for TCP11X2 Gene

TCP11X2 (T-Complex 11 Family, X-Linked 2) is a Protein Coding gene. An important paralog of this gene is TCP11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCP11X2 Gene

Genomics for TCP11X2 Gene

Regulatory Elements for TCP11X2 Gene

Enhancers for TCP11X2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH0XF102516 0.6 ENCODE 0.2 -44.9 -44890 1.4 CTCF RAD21 GLIS2 ZBTB48 POLR2A NFYB PRDM10 ZNF600 E2F6 ZBTB20 TMSB15A TCP11X2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TCP11X2 on UCSC Golden Path with GeneCards custom track

Genomic Location for TCP11X2 Gene

Chromosome:
X
Start:
102,374,628 bp from pter
End:
102,471,812 bp from pter
Size:
97,185 bases
Orientation:
Minus strand

Genomic View for TCP11X2 Gene

Genes around TCP11X2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCP11X2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCP11X2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCP11X2 Gene

Proteins for TCP11X2 Gene

  • Protein details for TCP11X2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5H9J9-T11X2_HUMAN
    Recommended name:
    T-complex protein 11 X-linked protein 2
    Protein Accession:
    Q5H9J9

    Protein attributes for TCP11X2 Gene

    Size:
    407 amino acids
    Molecular mass:
    46373 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TCP11X2 Gene

Post-translational modifications for TCP11X2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TCP11X2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TCP11X2 Gene

Domains & Families for TCP11X2 Gene

Protein Domains for TCP11X2 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q5H9J9

UniProtKB/Swiss-Prot:

T11X2_HUMAN :
  • Belongs to the TCP11 family.
Family:
  • Belongs to the TCP11 family.
genes like me logo Genes that share domains with TCP11X2: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for TCP11X2 Gene

Function for TCP11X2 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCP11X2 Gene

Localization for TCP11X2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TCP11X2 Gene

Pathways & Interactions for TCP11X2 Gene

SuperPathways for TCP11X2 Gene

No Data Available

Interacting Proteins for TCP11X2 Gene

Gene Ontology (GO) - Biological Process for TCP11X2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCP11X2 Gene

Transcripts for TCP11X2 Gene

mRNA/cDNA for TCP11X2 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TCP11X2 Gene

No ASD Table

Relevant External Links for TCP11X2 Gene

GeneLoc Exon Structure for
TCP11X2
ECgene alternative splicing isoforms for
TCP11X2

Expression for TCP11X2 Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for TCP11X2 Gene



Protein tissue co-expression partners for TCP11X2 Gene

NURSA nuclear receptor signaling pathways regulating expression of TCP11X2 Gene:

TCP11X2

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TCP11X2 Gene

Orthologs for TCP11X2 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TCP11X2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100611721 34
  • 99.43 (n)
-- 35
  • 99 (a)
OneToMany
dog
(Canis familiaris)
Mammalia TCP11X2 34
  • 84.21 (n)
-- 35
  • 68 (a)
OneToMany
cow
(Bos Taurus)
Mammalia TCP11 34
  • 82.43 (n)
-- 35
  • 60 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia LOC679989 34
  • 76.87 (n)
mouse
(Mus musculus)
Mammalia 1700008I05Rik 34 35
  • 75.58 (n)
Tcp11x2 16
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 48 (a)
ManyToMany
-- 35
  • 36 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 47 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 35
  • 38 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 37 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta CG16721 35
  • 21 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea M05D6.2 35
  • 21 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SOK1 35
  • 9 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 20 (a)
OneToMany
Species where no ortholog for TCP11X2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for TCP11X2 Gene

ENSEMBL:
Gene Tree for TCP11X2 (if available)
TreeFam:
Gene Tree for TCP11X2 (if available)

Paralogs for TCP11X2 Gene

Paralogs for TCP11X2 Gene

(4) SIMAP similar genes for TCP11X2 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for TCP11X2 Gene

genes like me logo Genes that share paralogs with TCP11X2: view

Variants for TCP11X2 Gene

Sequence variations from dbSNP and Humsavar for TCP11X2 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type
rs189555946 -- 102,461,329(+) CTGGG(C/T)GTGGT intron-variant
rs201052141 -- 102,463,352(+) TACGA(C/T)GAGAA intron-variant
rs202213491 -- 102,466,745(+) ATCTC(-/T)TTTCC intron-variant
rs368117844 -- 102,468,350(+) GGGAC(A/G)GGAGT intron-variant
rs369894194 -- 102,473,359(+) CTCTA(C/T)GCAGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TCP11X2 Gene

Variant ID Type Subtype PubMed ID
dgv2351e212 CNV loss 25503493
esv3574272 CNV loss 25503493
nsv1115884 CNV duplication 24896259

Relevant External Links for TCP11X2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCP11X2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCP11X2 Gene

Disorders for TCP11X2 Gene

Relevant External Links for TCP11X2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCP11X2

No disorders were found for TCP11X2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCP11X2 Gene

Publications for TCP11X2 Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  3. NXF5, a novel member of the nuclear RNA export factor family, is lost in a male patient with a syndromic form of mental retardation. (PMID: 11566096) Jun L. … Froyen G. (Curr. Biol. 2001) 3 64

Products for TCP11X2 Gene

Sources for TCP11X2 Gene

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