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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

TCP11 Gene

protein-coding   GIFtS: 52
GCID: GC06M035133

t-complex 11, testis-specific

(Previous names: t-complex 11 (a murine tcp homolog), t-complex 11 homolog...)
(Previous symbol: D6S230E)
 Explore 2 diseases affiliated with
TCP11 via our new
 Human Malady Compendium 
Biological research products
for TCP11
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
T-Complex 11, Testis-Specific1 2     T-Complex 11 Homolog (Mouse)1
D6S230E1 2 5     Fertilization-Promoting Peptide Receptor2
FPPR1 2     T-Complex 11 Homolog2
T-Complex 11 (A Murine Tcp Homolog)1 2     T-Complex Protein 11 Homolog2
KIAA02291     

External Ids:    HGNC: 116581   Entrez Gene: 69542   Ensembl: ENSG000001246787   OMIM: 1869825   UniProtKB: Q8WWU53   

Export aliases for TCP11 gene to outside databases

Previous GC identifers: GC06M035087 GC06M035132 GC06M035193 GC06M034807


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: TCP11_HUMAN, Q8WWU5
Function: May play an important role in sperm function and fertility

Gene Wiki entry for TCP11


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000006.11  NC_018917.1  NT_007592.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the TCP11 gene promoter:
         HOXA9   HOXA9B   MIF-1   Meis-1b   MEF-2A   FOXI1   POU2F1   POU2F1a   aMEF-2   Meis-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidTCP11 promoter sequence
   Search SABiosciences Chromatin IP Primers for TCP11

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat TCP11


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 6p21.31   Ensembl cytogenetic band:  6p21.31   HGNC cytogenetic band: 6p21.31

TCP11 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
TCP11 gene location

GeneLoc information about chromosome 6         GeneLoc Exon Structure

GeneLoc location for GC06M035133:  view genomic region     (about GC identifiers)

Start:
35,085,848 bp from pter      End:
35,116,387 bp from pter
Size:
30,540 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: TCP11_HUMAN, Q8WWU5 (See protein sequence)
Recommended Name: T-complex protein 11 homolog  
Size: 503 amino acids; 56141 Da
Subcellular location: Membrane; Single-pass membrane protein (Potential)
Secondary accessions: B2RCE9 B3KQ27 B7Z7G1 Q8NF85 Q9NQZ9 Q9NR39
Alternative splicing: 4 isoforms:  Q8WWU5-1   Q8WWU5-2   Q8WWU5-3   Q8WWU5-4   

Explore the universe of human proteins at neXtProt for TCP11: NX_Q8WWU5

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8WWU5

  • TCP11 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (7 alternative transcripts): 
    NP_001087197.1  NP_001248746.1  NP_001248747.1  NP_001248748.1  NP_001248749.1  NP_001248750.1  NP_061149.1  

    ENSEMBL proteins: 
     ENSP00000363091   ENSP00000402816   ENSP00000422105   ENSP00000399012   ENSP00000308708  
     ENSP00000423293   ENSP00000421916   ENSP00000404479   ENSP00000363085   ENSP00000415320  
     ENSP00000425995   ENSP00000415562   ENSP00000421103   ENSP00000422259   ENSP00000422774  
     ENSP00000423183   ENSP00000425849   ENSP00000421333   ENSP00000421386   ENSP00000424209  
     ENSP00000422940   ENSP00000421349   ENSP00000424332   ENSP00000244645  

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    Novus Biologicals TCP11 Proteins
    Novus Biologicals TCP11 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for TCP11

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016021integral to membrane IEA--


    TCP11 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    TCP11 for domains           About GeneDecksing

    1 InterPro domain/family:
     IPR008862 Tcp11

    Graphical View of Domain Structure for InterPro Entry Q8WWU5

    ProtoNet protein and cluster: Q8WWU5

    UniProtKB/Swiss-Prot: TCP11_HUMAN, Q8WWU5
    Similarity: Belongs to the TCP11 family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: TCP11_HUMAN, Q8WWU5
    Function: May play an important role in sperm function and fertility

         Genatlas biochemistry entry for TCP11:
    T-complex 11 (murine tcp homolog)

    miRNA
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    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for TCP11


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for TCP11

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    2 Interacting proteins for TCP11 (Q8WWU53 ENSP000003087084) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VAV2P527353, ENSP000003609164I2D: score=1 STRING: ENSP00000360916
    IKBKGQ9Y6K93, ENSP000003586224I2D: score=1 STRING: ENSP00000358622
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007275multicellular organismal development TAS1893875
    GO:0007283spermatogenesis IEA--
    GO:0030154cell differentiation IEA--


    TCP11 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    TCP11 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for TCP11
    1 Novoseek chemical compound relationship for TCP11 gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    adenylate 54.7 2 9322250 (1)

    Search CenterWatch for drugs/clinical trials and news about TCP11 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for TCP11 gene (7 alternative transcripts): 
    NM_001093728.2  NM_001261817.1  NM_001261818.1  NM_001261819.1  NM_001261820.1  NM_001261821.1  NM_018679.5  

    Unigene Cluster for TCP11:

    T-complex 11, testis-specific
    Hs.435371  [show with all ESTs]
    Unigene Representative Sequence: NM_001261820
    18/27 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 27):
    ENST00000373979(uc003ojz.1) ENST00000412155 ENST00000502480 ENST00000455706
    ENST00000311875(uc003okd.2 uc011dsu.1 uc011dsv.1 uc011dsw.1)
    ENST00000505911 ENST00000504758 ENST00000444780 ENST00000373974 ENST00000418521
    ENST00000512012 ENST00000427376 ENST00000486638 ENST00000469514 ENST00000492680
    ENST00000507706 ENST00000479418 ENST00000505400

    miRNA
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    Inhib. RNA
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    Additional cDNA sequence: 

    AF260330.1 AF269223.1 AF536532.1 AF536533.1 AK057234.1 AK098590.1 AK301778.1 AK301975.1 
    AK302022.1 AK302375.1 AK302456.1 AK315078.1 AK316403.1 AY069943.1 BC033729.1 BC040003.1 
    BC048418.1 BC090050.1 

    16 DOTS entries:

    DT.40256097  DT.91725898  DT.91749044  DT.91725896  DT.121388878  DT.97778236  DT.100786149  DT.121388945 
    DT.95363801  DT.121388922  DT.95363798  DT.121388915  DT.91661294  DT.100786147  DT.121388976  DT.91725895 

    24/116 AceView cDNA sequences (see all 116):

    BG700615 BG721134 AF536532 BI561278 CD557279 AY069943 BI828236 BG716925 
    BI829842 BC048418 AK057234 BX280473 BC040003 BC033729 AF536533 BI829801 
    BG722302 AF269223 BI829267 NM_018679 BP371219 AF260330 BF507838 BG721937 

    GeneLoc Exon Structure

    5/18 Alternative Splicing Database (ASD) splice patterns (SP) for TCP11 (see all 18)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5a · 5b · 5c ^ 6a · 6b ^ 7 ^ 8a · 8b · 8c · 8d · 8e ^ 9a · 9b · 9c · 9d ^ 10 ^
    SP1:                                            -                                               -                                                               
    SP2:                                            -                 -                             -                                                               
    SP3:                                            -                 -     -     -                 -                                                               
    SP4:                                            -     -     -                                   -                                                               
    SP5:                                -     -     -     -     -                 -     -     -     -     -                                                         

    ExUns: 11a · 11b · 11c ^ 12 ^ 13
    SP1:                              
    SP2:                              
    SP3:                              
    SP4:                              
    SP5:                              


    ECgene alternative splicing isoforms for TCP11

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    TCP11 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: TAAACACCAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    TCP11 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    TestisSeminiferous TubulesMature Sertoli CellsTestis
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See TCP11 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for TCP11

    SOURCE GeneReport for Unigene cluster: Hs.435371

    UniProtKB/Swiss-Prot: TCP11_HUMAN, Q8WWU5
    Tissue specificity: Expressed only in fertile adult testis

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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for TCP11 gene from 4/16 species (see all 16)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves TCP111 t-complex 11 homolog (mouse) 59.74(n)
    48.23(a)
      419897  XM_418022.3  XP_418022.3 
    lizard
    (Anolis carolinensis)
    Reptilia --
    --
    49(a)
    1 → many
    4(120834287-120853370)
    fruit fly
    (Drosophila melanogaster)
    Insecta CG167216
    --
    25(a)
    1 → many
    X(5773891-5777433)
    worm
    (Caenorhabditis elegans)
    Secernentea M05D6.26
    --
    20(a)
    1 → many
    II(8468054-8470109)


    ENSEMBL Gene Tree for TCP11 (if available)
    TreeFam Gene Tree for TCP11 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for TCP11 gene
    TCP11L12  TCP11L22  LOC1009966482  
    4 SIMAP similar genes for TCP11 using alignment to 16 protein entries:     TCP11_HUMAN (see all proteins):
    LOC100996648    LL0XNC01-19D8.1    TCP11L2    TCP11L1

    TCP11 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/421 NCBI SNPs in TCP11 are shown (see all 421    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 6 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs558290991,2
    C--34826399(+) GCAGCA/GAAGAA 1 -- int10--------
    rs562229411,2
    C--34826877(+) AGACCA/GGCATG 1 -- int10--------
    rs1885395061,2
    --35085506(+) CTTGTC/TGCATT 7 -- int10--------
    rs1491303761,2
    --35085567(+) AACCAC/TGTCCT 7 -- int10--------
    rs412700481,2
    --35085821(+) GGCCTC/TAGCTG 7 -- int11Minor allele frequency- T:0.01NA 120
    rs1812020261,2
    --35085874(+) ATTAAC/TGAATG 7 -- ut310--------
    rs1862020231,2
    --35085932(+) GTACTA/GGCTGC 7 -- ut310--------
    rs42564201,2
    H--35085958(+) AGCTCA/TCTGTC 7 -- ut314Minor allele frequency- T:0.00NS EA 416
    rs788237601,2
    C,--35086010(+) TCCTCT/CTGGGT 7 -- ut312Minor allele frequency- C:0.14CSA WA 120
    rs1126055931,2
    C,F,--35086073(+) TCCAGT/GGCCTG 14 /A syn13Minor allele frequency- G:0.01CSA NA EU 5873

    HapMap Linkage Disequilibrium report for TCP11 (35085848 - 35116387 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 3 variations for TCP11
         1 CNV: 99502
         2 Indels: 28289 12833

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing TCP11
    DNA2.0 Custom Variant and Variant Library Synthesis for TCP11

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    TCP11 for disorders           About GeneDecksing

    OMIM gene information: 186982    OMIM disorders: --

    2 diseases for TCP11:    About MalaCards
    pancreatic cancer    pancreatitis

    Human Genome Epidemiology (HuGE) Navigator: TCP11 (1 document)

    Export disorders for TCP11 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for TCP11 gene, integrated from 9 sources (see all 19):
    (articles sorted by number of sources associating them with TCP11)
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    1. Molecular characterization of the TCP11 gene which is the human homologue of the mouse gene encoding the receptor of fertilization promoting peptide. (PubMed id 11756566)1, 2, 3 Ma Y.... Milunsky A. (2002)
    2. A testis-expressed Zn finger gene (ZNF76) in human 6p21.3 centromeric to the MHC is closely linked to the human homolog of the t-complex gene tcp-11. (PubMed id 1427894)1, 3, 9 Ragoussis J.... Trowsdale J. (1992)
    3. Human t-complex protein 11 (TCP11), a testis-specific gene product, is a potential determinant of the sperm morphology. (PubMed id 21597245)1, 3 Liu Y....Ma Y. (2011)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. Cloning, expression and alternative splicing of a novel isoform of human TCP11b gene. (PubMed id 12545228)1, 2 Ma Y.X.... Sun Y. (2003)
    6. Cloning, expression, and alternative splicing of the novel isoform of hTCP11 gene. (PubMed id 12905703)1, 2 Ma Y.X.... Xu W.M. (2003)
    7. TCP-11, the product of a mouse t-complex gene, plays a role in stimulation of capacitation and inhibition of the spontaneous acrosome reaction. (PubMed id 9322250)1, 9 Fraser L.R....Dudley R.K. (1997)
    8. Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
    9. The role of height-associated loci identified in geno me wide association studies in the determination of pediatric stature. (PubMed id 20546612)1 Zhao J....Grant S.F. (2010)
    10. Expanding the substantial interactome of NEMO using p rotein microarrays. (PubMed id 20098747)1 Fenner B.J....Prehn J.H. (2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 6954 HGNC: 11658 AceView: TCP11 Ensembl:ENSG00000124678 euGenes: HUgn6954
    ECgene: TCP11 H-InvDB: TCP11

    (According to HUGE)
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    HUGE: KIAA0229

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for TCP11 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for TCP11 gene:
    Search GeneIP for patents involving TCP11

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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