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Aliases for TCP1 Gene

Aliases for TCP1 Gene

  • T-Complex 1 2 3
  • TCP-1-Alpha 3 4
  • CCT-Alpha 3 4
  • CCTA 3 4
  • CCT1 3 4
  • T-Complex Protein 1, Alpha Subunit 3
  • T-Complex Protein 1 Subunit Alpha 3
  • Tailless Complex Polypeptide 1 3
  • D6S230E 3

External Ids for TCP1 Gene

Previous GeneCards Identifiers for TCP1 Gene

  • GC06M159639
  • GC06M160073
  • GC06M160109
  • GC06M160170
  • GC06M160120
  • GC06M160122
  • GC06M160199

Summaries for TCP1 Gene

Entrez Gene Summary for TCP1 Gene

  • The protein encoded by this gene is a molecular chaperone that is a member of the chaperonin containing TCP1 complex (CCT), also known as the TCP1 ring complex (TRiC). This complex consists of two identical stacked rings, each containing eight different proteins. Unfolded polypeptides enter the central cavity of the complex and are folded in an ATP-dependent manner. The complex folds various proteins, including actin and tubulin. Alternate transcriptional splice variants of this gene, encoding different isoforms, have been characterized. In addition, three pseudogenes that appear to be derived from this gene have been found. [provided by RefSeq, Jun 2010]

GeneCards Summary for TCP1 Gene

TCP1 (T-Complex 1) is a Protein Coding gene. Among its related pathways are Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein and HIF1Alpha Pathway. GO annotations related to this gene include unfolded protein binding.

UniProtKB/Swiss-Prot for TCP1 Gene

  • Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Gene Wiki entry for TCP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCP1 Gene

Genomics for TCP1 Gene

Regulatory Elements for TCP1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TCP1 Gene

Start:
159,778,498 bp from pter
End:
159,789,749 bp from pter
Size:
11,252 bases
Orientation:
Minus strand

Genomic View for TCP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCP1 Gene

Proteins for TCP1 Gene

  • Protein details for TCP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P17987-TCPA_HUMAN
    Recommended name:
    T-complex protein 1 subunit alpha
    Protein Accession:
    P17987
    Secondary Accessions:
    • E1P5B2
    • Q15556
    • Q5TCM3

    Protein attributes for TCP1 Gene

    Size:
    556 amino acids
    Molecular mass:
    60344 Da
    Quaternary structure:
    • Heterooligomeric complex of about 850 to 900 kDa that forms two stacked rings, 12 to 16 nm in diameter. Interacts with PACRG. Component of the BBS/CCT complex composed at least of MKKS, BBS10, BBS12, TCP1, CCT2, CCT3, CCT4, CCT5 AND CCT8.

neXtProt entry for TCP1 Gene

Proteomics data for TCP1 Gene at MOPED

Post-translational modifications for TCP1 Gene

  • Ubiquitination at Lys33, Lys63, Lys73, Lys109, Lys111, Lys243, Lys259, Lys365, Lys400, Lys466, Lys484, Lys494, Lys499, Lys532, Lys538, and Lys541
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for TCP1 Gene

Domains for TCP1 Gene

Gene Families for TCP1 Gene

HGNC:
  • CHAP :Heat Shock Proteins / Chaperonins

Graphical View of Domain Structure for InterPro Entry

P17987

UniProtKB/Swiss-Prot:

TCPA_HUMAN :
  • P17987
Family:
  • Belongs to the TCP-1 chaperonin family.
genes like me logo Genes that share domains with TCP1: view

Function for TCP1 Gene

Molecular function for TCP1 Gene

GENATLAS Biochemistry:
T-complex 1,cytosolic,potential chaperonin,TF55/TCP-1,overlapping in opposite sense,the 3 region of ACAT2
UniProtKB/Swiss-Prot Function:
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. As part of the BBS/CCT complex may play a role in the assembly of BBSome, a complex involved in ciliogenesis regulating transports vesicles to the cilia. Known to play a role, in vitro, in the folding of actin and tubulin.

Gene Ontology (GO) - Molecular Function for TCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 14532270
GO:0005524 ATP binding IEA --
GO:0031625 ubiquitin protein ligase binding IPI 21753002
GO:0044822 poly(A) RNA binding IDA 22681889
GO:0051082 unfolded protein binding IEA --
genes like me logo Genes that share ontologies with TCP1: view
genes like me logo Genes that share phenotypes with TCP1: view

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCP1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for TCP1 Gene

Localization for TCP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCP1 Gene

Cytoplasm. Cytoplasm, cytoskeleton, microtubule organizing center, centrosome.

Gene Ontology (GO) - Cellular Components for TCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000242 pericentriolar material IEA --
GO:0000792 heterochromatin --
GO:0001669 acrosomal vesicle IEA --
GO:0002199 zona pellucida receptor complex IEA --
GO:0005720 nuclear heterochromatin IEA --
genes like me logo Genes that share ontologies with TCP1: view

No data available for Subcellular locations from COMPARTMENTS for TCP1 Gene

Pathways for TCP1 Gene

genes like me logo Genes that share pathways with TCP1: view

PCR Array Products

Gene Ontology (GO) - Biological Process for TCP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006457 protein folding TAS --
GO:0007021 tubulin complex assembly NAS 11532003
GO:0007339 binding of sperm to zona pellucida IEA --
GO:0044053 translocation of peptides or proteins into host cell cytoplasm IEA --
GO:0044267 cellular protein metabolic process TAS --
genes like me logo Genes that share ontologies with TCP1: view

Compounds for TCP1 Gene

(3) Novoseek inferred chemical compound relationships for TCP1 Gene

Compound -log(P) Hits PubMed IDs
acetyl-coa 29 2
atp 27.8 2
glucose 0 1
genes like me logo Genes that share compounds with TCP1: view

Transcripts for TCP1 Gene

Unigene Clusters for TCP1 Gene

T-complex 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCP1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCP1 Gene

ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b · 6c · 6d ^ 7a · 7b · 7c · 7d ^ 8a · 8b · 8c · 8d ^
SP1: - - - - - - - -
SP2: -
SP3: - - - - - - - - -
SP4:
SP5:
SP6: - - - - - - - - - - -
SP7: - - - - - - - - - - - - - - - - - - -
SP8: - - - - - -
SP9:
SP10: - - - - - -
SP11: - - - - - - - - - - - - - - - - - -
SP12: - - - - - - - - - - - -
SP13: - - - -
SP14: - - -
SP15: - -
SP16:
SP17: - - - - -
SP18:

ExUns: 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14a · 14b
SP1:
SP2:
SP3:
SP4: -
SP5:
SP6:
SP7:
SP8:
SP9: -
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17:
SP18:

Relevant External Links for TCP1 Gene

GeneLoc Exon Structure for
TCP1
ECgene alternative splicing isoforms for
TCP1

Expression for TCP1 Gene

mRNA expression in normal human tissues for TCP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for TCP1 Gene

SOURCE GeneReport for Unigene cluster for TCP1 Gene Hs.363137

genes like me logo Genes that share expressions with TCP1: view

Expression partners for TCP1 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues , Protein differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for TCP1 Gene

Orthologs for TCP1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TCP1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TCP1 35
  • 92.67 (n)
  • 97.3 (a)
TCP1 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TCP1 35
  • 92.69 (n)
  • 97.66 (a)
TCP1 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tcp1 35
  • 90.65 (n)
  • 96.4 (a)
Tcp1 16
Tcp1 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia TCP1 35
  • 99.82 (n)
  • 100 (a)
TCP1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tcp1 35
  • 90.05 (n)
  • 97.66 (a)
oppossum
(Monodelphis domestica)
Mammalia TCP1 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TCP1 36
  • 95 (a)
OneToOne
chicken
(Gallus gallus)
Aves TCP1 35
  • 80.84 (n)
  • 91.17 (a)
TCP1 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TCP1 36
  • 90 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tcp1 35
  • 77.18 (n)
  • 88.83 (a)
African clawed frog
(Xenopus laevis)
Amphibia tcp1-A-prov 35
zebrafish
(Danio rerio)
Actinopterygii tcp1 35
  • 73.48 (n)
  • 87.16 (a)
tcp1 36
  • 86 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.9170 35
fruit fly
(Drosophila melanogaster)
Insecta T-cp1 37
  • 73 (a)
T-cp1 35
  • 64.86 (n)
  • 73.6 (a)
T-cp1 36
  • 73 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004238 35
  • 63.02 (n)
  • 74.68 (a)
worm
(Caenorhabditis elegans)
Secernentea cct-1 37
  • 69 (a)
cct-1 35
  • 62.02 (n)
  • 69.33 (a)
cct-1 36
  • 68 (a)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AGL092W 35
  • 56.4 (n)
  • 62.15 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A04191g 35
  • 60.28 (n)
  • 62.03 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes TCP1 35
  • 60.72 (n)
  • 64.31 (a)
TCP1 36
  • 61 (a)
OneToOne
TCP1 38
thale cress
(Arabidopsis thaliana)
eudicotyledons TCP-1 35
  • 63.36 (n)
  • 66.85 (a)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.2766 35
barley
(Hordeum vulgare)
Liliopsida Hv.1928 35
rice
(Oryza sativa)
Liliopsida Os.22700 35
Os04g0551800 35
  • 65.09 (n)
  • 68.11 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.28393 35
corn
(Zea mays)
Liliopsida Zm.6975 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.12384 35
bread mold
(Neurospora crassa)
Ascomycetes NCU04448 35
  • 58.95 (n)
  • 64.07 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes cct1 35
  • 61.93 (n)
  • 66.61 (a)
Species with no ortholog for TCP1:
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for TCP1 Gene

ENSEMBL:
Gene Tree for TCP1 (if available)
TreeFam:
Gene Tree for TCP1 (if available)

Paralogs for TCP1 Gene

Pseudogenes.org Pseudogenes for TCP1 Gene

genes like me logo Genes that share paralogs with TCP1: view

No data available for Paralogs for TCP1 Gene

Variants for TCP1 Gene

Sequence variations from dbSNP and Humsavar for TCP1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type MAF
rs1547093 -- 159,784,959(+) TAAAG(A/C)AGCAA intron-variant
rs1547094 -- 159,785,083(+) ATTTC(A/C)ATACA intron-variant
rs4709368 -- 159,783,095(+) ATGTA(C/T)GAAGA intron-variant
rs5881340 -- 159,784,308(+) TTTTA(-/T)TTTTT intron-variant
rs7764326 -- 159,783,324(+) TGACA(A/G)CACAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TCP1 Gene

Variant ID Type Subtype PubMed ID
dgv2023e1 CNV Complex 17122850
nsv5563 CNV Insertion 18451855

Relevant External Links for TCP1 Gene

HapMap Linkage Disequilibrium report
TCP1
Human Gene Mutation Database (HGMD)
TCP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCP1 Gene

Disorders for TCP1 Gene

(3) Novoseek inferred disease relationships for TCP1 Gene

Disease -log(P) Hits PubMed IDs
down syndrome 24 1
shock 15.1 2
alzheimers disease 8.52 2

Relevant External Links for TCP1

Genetic Association Database (GAD)
TCP1
Human Genome Epidemiology (HuGE) Navigator
TCP1
genes like me logo Genes that share disorders with TCP1: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES and Genatlas for TCP1 Gene

Publications for TCP1 Gene

  1. The human homologue of the mouse T-complex gene, TCP1, is located on chromosome 6 but is not near the HLA region. (PMID: 3653076) Willison K. … Trowsdale J. (EMBO J. 1987) 2 3 4
  2. T-complex polypeptide-1 is a subunit of a heteromeric particle in the eukaryotic cytosol. (PMID: 1630492) Lewis V.A. … Willison K.R. (Nature 1992) 3 4 23
  3. Nucleotide and amino-acid sequence of human testis-derived TCP1. (PMID: 2377466) Kirchhoff C. … Willison K.R. (Nucleic Acids Res. 1990) 3 4
  4. Assignment of the TCP1 locus to the long arm of human chromosome 6 by in situ hybridization. (PMID: 3476253) Fonatsch C. … Ziegler A. (Cytogenet. Cell Genet. 1987) 2 3
  5. Elucidation of the subunit orientation in CCT (chaperonin containing TCP1) from the subunit composition of CCT micro-complexes. (PMID: 9250675) Liou A.K. … Willison K.R. (EMBO J. 1997) 3 23

Products for TCP1 Gene

Sources for TCP1 Gene

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