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Aliases for TCL6 Gene

Subcategory (RNA class) for TCL6 Gene

processed_transcript

Quality Score for this RNA gene is

3

Aliases for TCL6 Gene

  • T-Cell Leukemia/Lymphoma 6 (Non-Protein Coding) 2 3
  • TNG1 3 6
  • TNG2 3 6
  • T-Cell Leukemia/Lymphoma 6 2
  • TCL1-Neighboring Gene 1 3
  • TCL1-Neighboring Gene 2 3

External Ids for TCL6 Gene

Previous GeneCards Identifiers for TCL6 Gene

  • GC14U990093
  • GC14P089934
  • GC14P094106
  • GC14P094107
  • GC14P095187
  • GC14P096116
  • GC14P076303

Summaries for TCL6 Gene

GeneCards Summary for TCL6 Gene

TCL6 (T-Cell Leukemia/Lymphoma 6 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the processed_transcript RNA class. Diseases associated with TCL6 include t-cell leukemia.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCL6 Gene

Genomics for TCL6 Gene

Regulatory Elements for TCL6 Gene

Genomic Location for TCL6 Gene

Start:
95,650,498 bp from pter
End:
95,679,833 bp from pter
Size:
29,336 bases
Orientation:
Plus strand

Genomic View for TCL6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCL6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCL6 Gene

Proteins for TCL6 Gene

  • Protein details for TCL6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024R6G0
    Recommended name:
    T-cell leukemia/lymphoma 6, isoform CRA_b
    Protein Accession:
    A0A024R6G0
    Secondary Accessions:

    Protein attributes for TCL6 Gene

    Size:
    141 amino acids
    Molecular mass:
    15855 Da
    Quaternary structure:
    No Data Available
  • Protein details for TCL6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024R6J2
    Recommended name:
    T-cell leukemia/lymphoma 6, isoform CRA_d
    Protein Accession:
    A0A024R6J2
    Secondary Accessions:

    Protein attributes for TCL6 Gene

    Size:
    163 amino acids
    Molecular mass:
    18579 Da
    Quaternary structure:
    No Data Available
  • Protein details for TCL6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024R6J5
    Recommended name:
    T-cell leukemia/lymphoma 6, isoform CRA_a
    Protein Accession:
    A0A024R6J5
    Secondary Accessions:

    Protein attributes for TCL6 Gene

    Size:
    119 amino acids
    Molecular mass:
    13961 Da
    Quaternary structure:
    No Data Available
  • Protein details for TCL6 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A024R6L9
    Recommended name:
    T-cell leukemia/lymphoma 6, isoform CRA_c
    Protein Accession:
    A0A024R6L9
    Secondary Accessions:

    Protein attributes for TCL6 Gene

    Size:
    103 amino acids
    Molecular mass:
    12064 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TCL6 Gene

Proteomics data for TCL6 Gene at MOPED

Post-translational modifications for TCL6 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCL6 Gene

Domains for TCL6 Gene

Gene Families for TCL6 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Protein Domains for TCL6 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for TCL6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with TCL6: view

No data available for UniProtKB/Swiss-Prot for TCL6 Gene

Function for TCL6 Gene

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCL6

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TCL6 Gene

Localization for TCL6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCL6 Gene COMPARTMENTS Subcellular localization image for TCL6 gene
Compartment Confidence
mitochondrion 2
endoplasmic reticulum 1
extracellular 1
nucleus 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for TCL6 Gene

Pathways for TCL6 Gene

SuperPathways for TCL6 Gene

No Data Available

Interacting Proteins for TCL6 Gene

Gene Ontology (GO) - Biological Process for TCL6 Gene

None

No data available for Pathways by source for TCL6 Gene

Transcripts for TCL6 Gene

mRNA/cDNA for TCL6 Gene

Unigene Clusters for TCL6 Gene

T-cell leukemia/lymphoma 6 (non-protein coding):
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCL6

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCL6 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b · 5c ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15a · 15b
SP1: - - - - -
SP2: - - -
SP3: -
SP4: - -
SP5: - - -
SP6: -
SP7: - - -
SP8:
SP9:

Relevant External Links for TCL6 Gene

GeneLoc Exon Structure for
TCL6
ECgene alternative splicing isoforms for
TCL6

Expression for TCL6 Gene

mRNA expression in normal human tissues for TCL6 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TCL6 Gene

This gene is overexpressed in Kidney - Cortex (15.2), Whole Blood (9.1), and Spleen (6.5).

SOURCE GeneReport for Unigene cluster for TCL6 Gene Hs.510368

genes like me logo Genes that share expressions with TCL6: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for TCL6 Gene

Orthologs for TCL6 Gene

Evolution for TCL6 Gene

ENSEMBL:
Gene Tree for TCL6 (if available)
TreeFam:
Gene Tree for TCL6 (if available)

No data available for Orthologs for TCL6 Gene

Paralogs for TCL6 Gene

No data available for Paralogs for TCL6 Gene

Variants for TCL6 Gene

Sequence variations from dbSNP and Humsavar for TCL6 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs1514 -- 95,673,370(-) ATTAT(A/G)CTATA nc-transcript-variant
rs1516 -- 95,673,357(-) GACCT(G/T)CTATA nc-transcript-variant
rs9591 -- 95,669,194(-) GACAA(C/G)AGCCA intron-variant
rs911678 -- 95,671,598(+) TTTGA(A/G)ATGAA intron-variant
rs1078704 -- 95,666,497(-) GTGTT(C/G)CTGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TCL6 Gene

Variant ID Type Subtype PubMed ID
dgv89e55 CNV Gain 17911159
nsv456410 CNV Loss 19166990

Relevant External Links for TCL6 Gene

HapMap Linkage Disequilibrium report
TCL6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCL6 Gene

Disorders for TCL6 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for TCL6 Gene including...

Search for TCL6 Gene in MalaCards »

Relevant External Links for TCL6

Genetic Association Database (GAD)
TCL6
genes like me logo Genes that share disorders with TCL6: view

No data available for UniProtKB/Swiss-Prot for TCL6 Gene

Publications for TCL6 Gene

  1. Molecular basis of mature T-cell leukemia. (PMID: 11710897) Pekarsky Y. … Croce C.M. (JAMA 2001) 3 23
  2. Genomic analysis of human and mouse TCL1 loci reveals a complex of tightly clustered genes. (PMID: 10588720) Hallas C. … Croce C.M. (Proc. Natl. Acad. Sci. U.S.A. 1999) 2 3
  3. Identification of the TCL6 genes within the breakpoint cluster region on chromosome 14q32 in T-cell leukemia. (PMID: 10851082) Saitou M. … Isobe M. (Oncogene 2000) 2 3
  4. A genome-wide association scan of RR and QT interval duration in 3 European genetically isolated populations: the EUROSPAN project. (PMID: 20031603) Marroni F. … Pramstaller P.P. (Circ Cardiovasc Genet 2009) 3 48
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for TCL6 Gene

Sources for TCL6 Gene

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