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Aliases for TCFL5 Gene

Aliases for TCFL5 Gene

  • Transcription Factor Like 5 2 3
  • Transcription Factor-Like 5 (Basic Helix-Loop-Helix) 2 3 5
  • HPV-16 E2-Binding Protein 1 3 4
  • Cha Transcription Factor 3 4
  • E2BP-1 3 4
  • CHA 3 4
  • HPV-16 E2 Binding Protein 1 2
  • BHLHe82 3
  • Figlb 3
  • E2BP1 4

External Ids for TCFL5 Gene

Previous GeneCards Identifiers for TCFL5 Gene

  • GC20M061349
  • GC20M061309
  • GC20M062151
  • GC20M062198
  • GC20M060942
  • GC20M061472
  • GC20M058190

Summaries for TCFL5 Gene

GeneCards Summary for TCFL5 Gene

TCFL5 (Transcription Factor Like 5) is a Protein Coding gene. Diseases associated with TCFL5 include chagas disease and bile duct adenocarcinoma. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and protein dimerization activity.

UniProtKB/Swiss-Prot for TCFL5 Gene

  • Putative transcription factor. Isoform 3 may play a role in early spermatogenesis.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCFL5 Gene

Genomics for TCFL5 Gene

Regulatory Elements for TCFL5 Gene

Promoters for TCFL5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TCFL5 on UCSC Golden Path with GeneCards custom track

Genomic Location for TCFL5 Gene

Chromosome:
20
Start:
62,841,014 bp from pter
End:
62,861,763 bp from pter
Size:
20,750 bases
Orientation:
Minus strand

Genomic View for TCFL5 Gene

Genes around TCFL5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCFL5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCFL5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCFL5 Gene

Proteins for TCFL5 Gene

  • Protein details for TCFL5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UL49-TCFL5_HUMAN
    Recommended name:
    Transcription factor-like 5 protein
    Protein Accession:
    Q9UL49
    Secondary Accessions:
    • O94771
    • Q9BYW0

    Protein attributes for TCFL5 Gene

    Size:
    500 amino acids
    Molecular mass:
    52697 Da
    Quaternary structure:
    • Efficient DNA binding requires dimerization with another bHLH protein.
    Miscellaneous:
    • Antibodies against TCFL5 are present in sera from patients with Chagas disease, an autoimmune disease caused by Trypanosoma cruzi. Two different epitopes that mimic Trypanosoma cruzi antigens have been identified: R1 and R3 epitopes, which are recognized by T- and B-cells, respectively.
    SequenceCaution:
    • Sequence=BAA36557.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for TCFL5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TCFL5 Gene

Proteomics data for TCFL5 Gene at MOPED

Post-translational modifications for TCFL5 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TCFL5 Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for TCFL5 Gene

Domains & Families for TCFL5 Gene

Gene Families for TCFL5 Gene

Protein Domains for TCFL5 Gene

Suggested Antigen Peptide Sequences for TCFL5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UL49

UniProtKB/Swiss-Prot:

TCFL5_HUMAN :
  • Contains 1 bHLH (basic helix-loop-helix) domain.
Domain:
  • Contains 1 bHLH (basic helix-loop-helix) domain.
genes like me logo Genes that share domains with TCFL5: view

Function for TCFL5 Gene

Molecular function for TCFL5 Gene

GENATLAS Biochemistry:
transcription factor-like 5,specifically expressed in cell nuclei of primary spermatocytes
UniProtKB/Swiss-Prot Function:
Putative transcription factor. Isoform 3 may play a role in early spermatogenesis.
genes like me logo Genes that share phenotypes with TCFL5: view

Animal Model Products

  • Taconic Biosciences Mouse Models for TCFL5

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TCFL5 Gene

Localization for TCFL5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCFL5 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCFL5 Gene COMPARTMENTS Subcellular localization image for TCFL5 gene
Compartment Confidence
nucleus 5
cytosol 1
extracellular 1
golgi apparatus 1
plasma membrane 1

No data available for Gene Ontology (GO) - Cellular Components for TCFL5 Gene

Pathways & Interactions for TCFL5 Gene

SuperPathways for TCFL5 Gene

No Data Available

Interacting Proteins for TCFL5 Gene

STRING Interaction Network Preview (showing 2 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000334294%0d%0a9606.ENSP00000356999%0d%0a9606.ENSP00000260810%0d%0a
Selected Interacting proteins: Q9UL49-TCFL5_HUMAN ENSP00000334294 for TCFL5 Gene via I2D STRING

SIGNOR curated interactions for TCFL5 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for TCFL5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007275 multicellular organism development IEA --
GO:0030154 cell differentiation IEA --
GO:0045595 regulation of cell differentiation IEP 9763657
genes like me logo Genes that share ontologies with TCFL5: view

No data available for Pathways by source for TCFL5 Gene

Drugs & Compounds for TCFL5 Gene

No Compound Related Data Available

Transcripts for TCFL5 Gene

Unigene Clusters for TCFL5 Gene

Transcription factor-like 5 (basic helix-loop-helix):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TCFL5 Gene

ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b
SP1: -
SP2: - - - -
SP3:
SP4: - -
SP5:

Relevant External Links for TCFL5 Gene

GeneLoc Exon Structure for
TCFL5
ECgene alternative splicing isoforms for
TCFL5

Expression for TCFL5 Gene

mRNA expression in normal human tissues for TCFL5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TCFL5 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x6.0).

Protein differential expression in normal tissues from HIPED for TCFL5 Gene

This gene is overexpressed in Testis (52.3) and Kidney (16.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for TCFL5 Gene



SOURCE GeneReport for Unigene cluster for TCFL5 Gene Hs.126248

mRNA Expression by UniProt/SwissProt for TCFL5 Gene

Q9UL49-TCFL5_HUMAN
Tissue specificity: Isoform 3 is testis specific. Isoform 2 is pancreas specific.
genes like me logo Genes that share expression patterns with TCFL5: view

Protein tissue co-expression partners for TCFL5 Gene

- Elite partner

Primer Products

In Situ Assay Products

Orthologs for TCFL5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for TCFL5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCFL5 36
  • 99 (a)
OneToOne
TCFL5 35
  • 99.5 (n)
  • 99.14 (a)
cow
(Bos Taurus)
Mammalia TCFL5 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TCFL5 36
  • 74 (a)
OneToOne
TCFL5 35
  • 85.84 (n)
  • 89.74 (a)
mouse
(Mus musculus)
Mammalia Tcfl5 16
Tcfl5 36
  • 87 (a)
OneToOne
Tcfl5 35
  • 85.65 (n)
  • 85.87 (a)
oppossum
(Monodelphis domestica)
Mammalia TCFL5 36
  • 63 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TCFL5 36
  • 62 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tcfl5 35
  • 85.22 (n)
  • 84.84 (a)
chicken
(Gallus gallus)
Aves TCFL5 35
  • 65.02 (n)
  • 60.45 (a)
TCFL5 36
  • 54 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TCFL5 36
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tcfl5 35
  • 57.53 (n)
  • 49.81 (a)
Species with no ortholog for TCFL5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TCFL5 Gene

ENSEMBL:
Gene Tree for TCFL5 (if available)
TreeFam:
Gene Tree for TCFL5 (if available)

Paralogs for TCFL5 Gene

No data available for Paralogs for TCFL5 Gene

Variants for TCFL5 Gene

Sequence variations from dbSNP and Humsavar for TCFL5 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs34304654 - 62,857,493(-) TCGGA(C/G)TCCTC nc-transcript-variant, reference, missense
VAR_061263 -
rs723829 -- 62,854,663(+) GCCCA(A/G)CACTC intron-variant
rs1980500 -- 62,842,489(+) GGGCG(C/T)GGCGG intron-variant
rs3765463 -- 62,853,859(+) AAGTT(A/G)TATCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TCFL5 Gene

Variant ID Type Subtype PubMed ID
dgv4603n71 CNV Loss 21882294
nsv913073 CNV Loss 21882294
nsv428380 CNV Loss 18775914
dgv4614n71 CNV Loss 21882294
nsv834027 CNV Loss 17160897
nsv9825 CNV Gain 18304495
nsv913124 CNV Loss 21882294
nsv913127 CNV Loss 21882294
nsv828794 CNV Loss 20364138
esv2670154 CNV Deletion 23128226
esv268658 CNV Insertion 20981092

Variation tolerance for TCFL5 Gene

Residual Variation Intolerance Score: 70.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.39; 77.02% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TCFL5 Gene

HapMap Linkage Disequilibrium report
TCFL5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCFL5 Gene

Disorders for TCFL5 Gene

MalaCards: The human disease database

(4) MalaCards diseases for TCFL5 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
chagas disease
  • american trypanosomiasis
bile duct adenocarcinoma
bile duct carcinoma
  • carcinoma of extrahepatic bile duct
foodborne botulism
  • intoxication botulism
- elite association - COSMIC cancer census association via MalaCards
Search TCFL5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for TCFL5

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCFL5
genes like me logo Genes that share disorders with TCFL5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for TCFL5 Gene

Publications for TCFL5 Gene

  1. Cloning of TCFL5 encoding a novel human basic helix-loop-helix motif protein that is specifically expressed in primary spermatocytes at the pachytene stage. (PMID: 9763657) Maruyama O. … Nakamura Y. (Cytogenet. Cell Genet. 1998) 2 3 4 23 67
  2. PCR based detection of HPV 16 and 18 genotypes in normal oral mucosa of tobacco users and non-users. (PMID: 24588599) Pattanshetty S. … Babji D. (Biotech Histochem 2014) 3
  3. Proteomic analysis identifies dysfunction in cellular transport, energy, and protein metabolism in different brain regions of atypical frontotemporal lobar degeneration. (PMID: 22360420) Martins-de-Souza D. … Bahn S. (J. Proteome Res. 2012) 3
  4. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3
  5. Genome-scale RNAi screen for host factors required for HIV replication. (PMID: 18976975) Zhou H. … Espeseth A.S. (Cell Host Microbe 2008) 3

Products for TCFL5 Gene

Sources for TCFL5 Gene

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