Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TCF7L1-IT1 Gene

Subcategory (RNA class) for TCF7L1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for TCF7L1-IT1 Gene

  • TCF7L1 Intronic Transcript 1 2 3 5
  • TCF7L1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for TCF7L1-IT1 Gene

Previous GeneCards Identifiers for TCF7L1-IT1 Gene

  • GC00U933050
  • GC02P085414

Summaries for TCF7L1-IT1 Gene

GeneCards Summary for TCF7L1-IT1 Gene

TCF7L1-IT1 (TCF7L1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCF7L1-IT1 Gene

Genomics for TCF7L1-IT1 Gene

Regulatory Elements for TCF7L1-IT1 Gene

Enhancers for TCF7L1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F085189 0.4 ENCODE 0.8 +4.0 4004 2.1 HDGF MLX CREB3L1 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 ZNF143 TCF7L1 TMEM150A SNORD94 ATOH8 MAT2A TCF7L1-IT1 GC02P085205
GH02F085178 1.2 Ensembl ENCODE 0.4 -6.3 -6343 3.5 CTCF JUN FEZF1 RAD21 ZIC2 YY1 ZNF664 ZNF316 PRDM10 MAFK TCF7L1 RNU6-674P TCF7L1-IT1
GH02F085174 1.1 Ensembl ENCODE 0.4 -10.8 -10787 2.1 ELF3 SOX13 SAP130 MLX ARID4B ZNF644 YY1 ZNF664 SCRT2 HNF4G TCF7L1 RNU6-674P TCF7L1-IT1
GH02F085171 0.9 FANTOM5 0.3 -15.1 -15099 0.4 SOX13 ZNF263 GATA3 ZFHX2 ESRRA SMAD4 RARA RNU6-674P TCF7L1 TCF7L1-IT1
GH02F085161 1.3 Ensembl ENCODE 0.3 -23.5 -23509 3.0 ELF3 HDGF TBL1XR1 ARID4B SIN3A RAD21 ZNF48 GLIS2 ZNF143 ZNF548 TCF7L1 SNORD94 RNU6-674P TCF7L1-IT1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TCF7L1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TCF7L1-IT1 Gene

Chromosome:
2
Start:
85,186,409 bp from pter
End:
85,187,253 bp from pter
Size:
845 bases
Orientation:
Plus strand

Genomic View for TCF7L1-IT1 Gene

Genes around TCF7L1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCF7L1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF7L1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for TCF7L1-IT1 Gene

Proteins for TCF7L1-IT1 Gene

Post-translational modifications for TCF7L1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCF7L1-IT1 Gene

Domains & Families for TCF7L1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCF7L1-IT1 Gene

Function for TCF7L1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCF7L1-IT1 Gene

Localization for TCF7L1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TCF7L1-IT1 Gene

Pathways & Interactions for TCF7L1-IT1 Gene

SuperPathways for TCF7L1-IT1 Gene

No Data Available

Interacting Proteins for TCF7L1-IT1 Gene

Gene Ontology (GO) - Biological Process for TCF7L1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCF7L1-IT1 Gene

Transcripts for TCF7L1-IT1 Gene

mRNA/cDNA for TCF7L1-IT1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TCF7L1-IT1 Gene

No ASD Table

Relevant External Links for TCF7L1-IT1 Gene

GeneLoc Exon Structure for
TCF7L1-IT1
ECgene alternative splicing isoforms for
TCF7L1-IT1

Expression for TCF7L1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for TCF7L1-IT1 Gene

genes like me logo Genes that share expression patterns with TCF7L1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TCF7L1-IT1 Gene

Orthologs for TCF7L1-IT1 Gene

Evolution for TCF7L1-IT1 Gene

ENSEMBL:
Gene Tree for TCF7L1-IT1 (if available)
TreeFam:
Gene Tree for TCF7L1-IT1 (if available)

No data available for Orthologs for TCF7L1-IT1 Gene

Paralogs for TCF7L1-IT1 Gene

No data available for Paralogs for TCF7L1-IT1 Gene

Variants for TCF7L1-IT1 Gene

Relevant External Links for TCF7L1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF7L1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for TCF7L1-IT1 Gene

Disorders for TCF7L1-IT1 Gene

No disorders were found for TCF7L1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for TCF7L1-IT1 Gene

Publications for TCF7L1-IT1 Gene

No publications were found for TCF7L1-IT1 Gene.

Products for TCF7L1-IT1 Gene

Sources for TCF7L1-IT1 Gene

Content
Loading form....