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Aliases & Descriptions for TCF3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases E2A 1 , 2 , 3 , 5 ITF1 1 , 2 , 3 MGC129647 1 , 2 MGC129648 1 , 2 TCF-3 3 VDIR 1 , 2 bHLHb21 1 , 2
Descriptions E2A immunoglobulin enhancer-binding factor E12/E47 2 Immunoglobulin enhancer-binding factor E12/E47 3 Immunoglobulin transcription factor 1 2 , 3 Kappa-E2-binding factor 2 , 3 Transcription factor 3 2 , 3 Transcription factor ITF-1 3 VDR interacting repressor 2 transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) 2 transcription factor E2-alpha 2
Search outside databases for aliases for TCF3 genePrevious GC identifers: GC19M001671 GC19M001549
Summaries for TCF3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: TFE2_HUMAN, P15923 Function : Heterodimers between TCF3 and tissue-specific basic helix-loop-helix (bHLH) proteins playmajor roles in determining tissue-specific cell fate during embryogenesis, like muscle or earlyB-cell differentiation. Dimers bind DNA on E-box motifs: 5'-CANNTG-3'. Binds to the kappa-E2 sitein the kappa immunoglobulin gene enhancer
Gene Wiki entry for TCF3
Genomic Location for TCF3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the TCF3 gene Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3 TCF3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19M001560:
(about GC identifiers )
Start:
1,560,293 bp from pter
End:
1,601,277 bp from pter
Size:
40,985 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000019.8 NT_011255.14 Proteins for TCF3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
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Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
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UniProtKB/Swiss-Prot: TFE2_HUMAN, P15923 (See
protein sequence )Recommended Name: Transcription factor E2-alpha Size : 654 amino acids; 67600 Da
Subunit : Efficient DNA binding requires dimerization with another bHLH protein. Forms a heterodimerwith ASH1 and TWIST2. Isoform E12 interacts with GRIPE and FIGLA (By similarity). Interacts withPTF1A and TGFB1I1. Component of a nuclear TAL-1 complex composed at least of CBFA2T3, LDB1, TAL1and TCF3 (By similarity). Interacts with UBE2I
Subcellular location : Nucleus
PDB structures from and Proteopedia : 1HLH (3D)
 
Secondary accessions : P15883 Q14208 Q14635 Q14636 Q2TB40 Q9UPI9Alternative splicing : 2 isoforms : P15923-1 P15923-2
Post-translational modifications:
Phosphorylated following NGF stimulation (By similarity)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001129611.1 NP_003191.1 ENSEMBL proteins: ENSP00000378813 ENSP00000262965 ENSP00000344375 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: TCF3 1 Gene Ontology (GO) cellular component term (links to tree view) :
About this table Antibodies for TCF3: Assays for TCF3:
Protein
Domains/ Families for TCF3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P15923 ProtoNet protein and cluster: P15923
1 Blocks protein family : IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: TFE2_HUMAN, P15923 Similarity : Contains 1 basic helix-loop-helix (bHLH) domain
Gene Function for TCF3
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
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Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001136139 Applied Biosystems Silencer ® siRNAs for TCF3 Sigma-Aldrich siRNA for TCF3 Sigma-Aldrich shRNA Panels and shRNA for TCF3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_003200 UniProtKB/Swiss-Prot: TFE2_HUMAN, P15923 Function : Heterodimers between TCF3 and tissue-specific basic helix-loop-helix (bHLH) proteins playmajor roles in determining tissue-specific cell fate during embryogenesis, like muscle or earlyB-cell differentiation. Dimers bind DNA on E-box motifs: 5'-CANNTG-3'. Binds to the kappa-E2 sitein the kappa immunoglobulin gene enhancer
Genatlas biochemistry entry for TCF3 :transcription factor 3,heterodimerizing with all myogenic bHLH vproteins and binding DNAcooperatively with PBXs/MEISs/PKNOX1
12 MGI mutant phenotypes (inferred from 13 alleles ) (MGI details for Tcf3) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for TCF3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
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KEGG
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Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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3 Sigma-Aldrich "Your Favorite Gene" Pathways for TCF3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for TCF3 5/126 Interacting proteins for TCF3 (ENSP00000262965 3 P15923 1 ) via UniProtKB, MINT, and/or STRING (see all 126
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
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Drugs & Compounds for TCF3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
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Novoseek and Drugs according to
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Transcripts for TCF3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_001136139 Sigma-Aldrich siRNA for TCF3 Sigma-Aldrich shRNA Panels and shRNA for TCF3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001136139 NM_003200
REFSEQ mRNAs for TCF3 gene (2 alternative transcripts): NM_001136139.1 NM_003200.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001136139 NM_003200
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_001136139  
Additional cDNA sequence: AK024806.1 AK310998.1 AL117663.1 AY311345.1 BC005166.2 BC011665.2 BC014680.1 BC110580.1 EU155120.1 M24404.1 M24405.1 M31222.1 M31523.1 M65214.1 X52078.1
24/30 DOTS entries (see all 30
): DT.454302 DT.92019877 DT.119679 DT.91793901 DT.40133480 DT.95150823 DT.100867319 DT.91982919 DT.100647180 DT.97862408 DT.91971358 DT.121441891 DT.100647174 DT.91991861 DT.101960616 DT.121441845 DT.97811535 DT.121441872 DT.87078345 DT.91770899 DT.92030806 DT.92335324 DT.100710233 DT.102839502
24/423 AceView cDNA sequences (see all 423
):AW575617 BE217951 AW467799 M65214 AI379099 BE782875 AW664917 AA417032 R71755 AI202041 BQ029880 AW291864 M24404 BF342764 AW007720 AA354346 BM771545 BQ707450 R72653 CF887518 BU631013 BQ929289 AW410957 AI983613
highest scoring ESTs for TCF3 :M31523 BQ068134 BX400804 CD516687 M65214 AA176379 AA210757 AA251176 AA251379 AA284958
Unigene Cluster for TCF3: Transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47) Hs.371282 [show with all ESTs ] Unigene Representative Sequence: NM_003200 GeneLoc Exon Structure 5/21 Alternative Splicing Database (ASD) splice patterns (SP) for TCF3 (see all 21
) ExUns: 1 ^ 2a · 2b · 2c ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18a · 18b · 18c · 18d · SP1 :                 -                                     SP2 :                                                     SP3 :                                                     SP4 :           -   -   -   -                                     SP5 :                                                    
ExUns: 18e · 18f ^ 19a · 19b ^ 20a · 20b · 20c · 20d ^ 21a · 21b · 21c · 21d · 21e · 21f · 21g ^ 22a · 22b · 22c ^ 23 ^ 24a · 24b · 24c SP1 :         -   -   -   -                               SP2 :     -   -   -                 -   -   -   -   -   -           SP3 :         -   -   -   -                               SP4 :                                             SP5 :                                            
About this scheme ECgene alternative splicing isoforms for TCF3 3 Ensembl transcripts including schematic representations : ENST00000395423
ENST00000262965
ENST00000344749
Expression for TCF3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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TCF3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for TCF3 1 / 2 / 3
19 probe-sets matching TCF3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTAGATGCAASOURCE GeneReport for Unigene cluster: Hs.371282 Expression variation in blood from EXPOLDB for TCF3
Orthologs for TCF3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
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Orthologs for TCF3 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for TCF3 ENSEMBL Gene Tree for TCF3 Paralogs for TCF3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for TCF3 gene TCF12 2 TCF4 2 Pseudogenes 1 related pseudogene
SNPs/Variants for TCF3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for TCF3 (up to first 250kb)
Disorders & Mutations for TCF3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 147141 UniProtKB/Swiss-Prot: TFE2_HUMAN, P15923
Chromosomal aberrations involving TCF3 are cause of forms of pre-B-cell acutelymphoblastic leukemia (B-ALL). Translocation t(1;19)(q23;p13.3) with PBX1; Translocationt(17;19)(q22;p13.3) with HLF. Inversion inv(19)(p13;q13) with TFPT
3 Novoseek disease relationships for TCF3 gene
About this table 1 PharmGKB disease relationship for TCF3 gene About this table Genatlas disease: TCF3 acute lymphoblastic leukemia,pre-B cell,with translocation t(1;19)(q23;p13);see PBX1
Medical News for TCF3 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for TCF3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/152 PubMed articles for TCF3 gene (see all 152
): Sequence of the cDNA encoding ITF-1, a positive-acting transcription factor. (PubMed id 2308859) 2, 3, 4 Henthorn P.... Kadesch T. (1990) A new homeobox gene contributes the DNA binding domain of the t(1;19) translocation protein in pre-B ALL. (PubMed id 1967983) 2, 3, 4 Kamps M.P....Baltimore D. (1990) The DNA sequence and biology of human chromosome 19. (PubMed id 15057824) 3, 4 Grimwood J.... Lucas S.M. (2004) Increased expression of the FIGLA transcription factor is associated with primordial follicle formation in the human fetal ovary. (PubMed id 15044608) 3, 4 Bayne R.A.L.... Anderson R.A. (2004) Identification of a novel molecular partner of the E2A gene in childhood leukemia. (PubMed id 10086727) 3, 4 Brambillasca F.... Privitera E. (1999) The mUBC9 murine ubiquitin conjugating enzyme interacts with the E2A transcription factors. (PubMed id 9409784) 3, 4 Loveys D.A.... Kato G.J. (1997) Sequence of a HeLa cDNA provides the DNA binding domain and carboxy terminus of HE47: a human helix-loop-helix protein related to the enhancer binding factor E47. (PubMed id 1818757) 3, 4 Zhang Y. and Bina M. (1992) Fusion of the leucine zipper gene HLF to the E2A gene in human acute B-lineage leukemia. (PubMed id 1386162) 3, 4 Inaba T.... Look A.T. (1992) The t(1;19)(q23;p13) results in consistent fusion of E2A and PBX1 coding sequences in acute lymphoblastic leukemias. (PubMed id 1671560) 3, 4 Hunger S.P....Cleary M.L. (1991) Mutations that disrupt DNA binding and dimer formation in the E47 helix-loop-helix protein map to distinct domains. (PubMed id 2112746) 3, 4 Voronova A. and Baltimore D. (1990)
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Genome Databases showing TCF3
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
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Other Databases showing TCF3
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Specialized Databases showing TCF3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Incremental update: 13 Oct 2009