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Aliases for TCF25 Gene

Aliases for TCF25 Gene

  • Transcription Factor 25 2 3 5
  • Transcription Factor 25 (Basic Helix-Loop-Helix) 2 3
  • Nuclear Localized Protein 1 3 4
  • TCF-25 3 4
  • NULP1 3 4
  • HKIAA1049 3
  • KIAA1049 4
  • PRO2620 3
  • FKSG26 3
  • Hulp1 3

External Ids for TCF25 Gene

Previous GeneCards Identifiers for TCF25 Gene

  • GC16P088469
  • GC16P089939
  • GC16P075633

Summaries for TCF25 Gene

Entrez Gene Summary for TCF25 Gene

  • TCF25 is a member of the basic helix-loop-helix (bHLH) family of transcription factors that are important in embryonic development (Steen and Lindholm, 2008 [PubMed 18068114]).[supplied by OMIM, Sep 2008]

GeneCards Summary for TCF25 Gene

TCF25 (Transcription Factor 25) is a Protein Coding gene. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6 and Non-Canonical Wnt Pathway. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding.

UniProtKB/Swiss-Prot for TCF25 Gene

  • May play a role in cell death control. Acts as a transcriptional repressor. Has been shown to repress transcription of SRF in vitro and so may play a role in heart development.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCF25 Gene

Genomics for TCF25 Gene

Regulatory Elements for TCF25 Gene

Enhancers for TCF25 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G089480 2.1 FANTOM5 Ensembl ENCODE dbSUPER 6.6 -386.8 -386817 12.0 MLX CREB3L1 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 SP3 NFYC SPG7 RPL13 ZNF778 RNU6-430P SNORD68 MC1R AFG3L1P ENSG00000260121 ZNF276 ANKRD11
GH16G089421 2 FANTOM5 Ensembl ENCODE dbSUPER 4.5 -450.6 -450556 2.4 HDGF FOXA2 PKNOX1 CREB3L1 ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 SNORD68 MC1R AFG3L1P ENSG00000260121 ENSG00000268218 ZNF778 SPG7 RPL13 ANKRD11 TCF25
GH16G089405 1.8 FANTOM5 Ensembl ENCODE dbSUPER 1.8 -464.7 -464744 7.1 HDGF FOXA2 PKNOX1 ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF121 GLIS2 RNU6-430P ANKRD11 SPG7 ZNF276 SPATA2L TCF25 ACSF3 CBFA2T3 ZNF778 ENSG00000261574
GH16G090076 1.6 FANTOM5 Ensembl ENCODE 1.9 +204.3 204277 1.9 PKNOX1 CREB3L1 ARNT SIN3A E2F7 ZNF2 GLIS2 ZNF143 FOS SP3 CDK10 ENSG00000261172 SPATA2L ZNF276 TCF25 VPS9D1 SPATA33 PRDM7 URAHP
GH16G089503 1.8 FANTOM5 ENCODE dbSUPER 1.4 -366.6 -366587 6.1 MLX CREB3L1 AGO1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 RPL13 SPG7 SNORD68 ENSG00000268218 AFG3L1P MC1R RNU6-430P ENSG00000260279 ZNF778 LOC101927863
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TCF25 on UCSC Golden Path with GeneCards custom track

Promoters for TCF25 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000089791 214 1601 HDGF PKNOX1 FOXA2 MLX CREB3L1 AGO1 ARID4B SIN3A DMAP1 ZBTB7B

Genomic Location for TCF25 Gene

Chromosome:
16
Start:
89,873,570 bp from pter
End:
89,913,627 bp from pter
Size:
40,058 bases
Orientation:
Plus strand

Genomic View for TCF25 Gene

Genes around TCF25 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCF25 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCF25 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCF25 Gene

Proteins for TCF25 Gene

  • Protein details for TCF25 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQ70-TCF25_HUMAN
    Recommended name:
    Transcription factor 25
    Protein Accession:
    Q9BQ70
    Secondary Accessions:
    • Q2MK75
    • Q9UPV3

    Protein attributes for TCF25 Gene

    Size:
    676 amino acids
    Molecular mass:
    76667 Da
    Quaternary structure:
    • Interacts with XIAP.

neXtProt entry for TCF25 Gene

Post-translational modifications for TCF25 Gene

  • Ubiquitination at Lys192 and Lys231
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for TCF25 Gene

Domains & Families for TCF25 Gene

Protein Domains for TCF25 Gene

Suggested Antigen Peptide Sequences for TCF25 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BQ70

UniProtKB/Swiss-Prot:

TCF25_HUMAN :
  • The C-terminal region mediates transcriptional repression.
  • Belongs to the TCF25 family.
Domain:
  • The C-terminal region mediates transcriptional repression.
Family:
  • Belongs to the TCF25 family.
genes like me logo Genes that share domains with TCF25: view

No data available for Gene Families for TCF25 Gene

Function for TCF25 Gene

Molecular function for TCF25 Gene

UniProtKB/Swiss-Prot Function:
May play a role in cell death control. Acts as a transcriptional repressor. Has been shown to repress transcription of SRF in vitro and so may play a role in heart development.

Gene Ontology (GO) - Molecular Function for TCF25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 transcription factor activity, sequence-specific DNA binding IDA 16574069
GO:0005515 protein binding IPI 16189514
genes like me logo Genes that share ontologies with TCF25: view
genes like me logo Genes that share phenotypes with TCF25: view

Animal Model Products

CRISPR Products

miRNA for TCF25 Gene

miRTarBase miRNAs that target TCF25

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TCF25

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TCF25 Gene

Localization for TCF25 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCF25 Gene

Nucleus. Note=Some staining in the cytosol.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TCF25 gene
Compartment Confidence
nucleus 5
mitochondrion 1
cytosol 1

Gene Ontology (GO) - Cellular Components for TCF25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA,IEA 16574069
genes like me logo Genes that share ontologies with TCF25: view

Pathways & Interactions for TCF25 Gene

genes like me logo Genes that share pathways with TCF25: view

Pathways by source for TCF25 Gene

2 Sino Biological pathways for TCF25 Gene

Gene Ontology (GO) - Biological Process for TCF25 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000122 negative regulation of transcription from RNA polymerase II promoter IDA 16574069
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0007507 heart development NAS 16574069
genes like me logo Genes that share ontologies with TCF25: view

No data available for SIGNOR curated interactions for TCF25 Gene

Drugs & Compounds for TCF25 Gene

No Compound Related Data Available

Transcripts for TCF25 Gene

Unigene Clusters for TCF25 Gene

Transcription factor 25 (basic helix-loop-helix):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Addgene plasmids for TCF25

Alternative Splicing Database (ASD) splice patterns (SP) for TCF25 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b · 14c · 14d ^ 15 ^ 16a · 16b ^ 17a ·
SP1: - - - - - -
SP2: - - - - -
SP3: - -
SP4: - -
SP5: - - - - - - - - - - - - -
SP6:
SP7:
SP8:
SP9:

ExUns: 17b ^ 18 ^ 19a · 19b ^ 20
SP1: - -
SP2: -
SP3:
SP4:
SP5:
SP6: - -
SP7:
SP8:
SP9:

Relevant External Links for TCF25 Gene

GeneLoc Exon Structure for
TCF25
ECgene alternative splicing isoforms for
TCF25

Expression for TCF25 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCF25 Gene

Protein differential expression in normal tissues from HIPED for TCF25 Gene

This gene is overexpressed in Breast (17.3) and Lung (10.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for TCF25 Gene



Protein tissue co-expression partners for TCF25 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of TCF25 Gene:

TCF25

SOURCE GeneReport for Unigene cluster for TCF25 Gene:

Hs.415342

mRNA Expression by UniProt/SwissProt for TCF25 Gene:

Q9BQ70-TCF25_HUMAN
Tissue specificity: In the embryo, widely expressed with highest levels in brain. In the adult, highest expression is found in the heart.

Evidence on tissue expression from TISSUES for TCF25 Gene

  • Nervous system(4.9)
  • Liver(4.4)
  • Muscle(4.3)
  • Lung(3.3)
  • Kidney(2.1)
genes like me logo Genes that share expression patterns with TCF25: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCF25 Gene

Orthologs for TCF25 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for TCF25 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCF25 34 35
  • 98.81 (n)
dog
(Canis familiaris)
Mammalia TCF25 34 35
  • 87.08 (n)
rat
(Rattus norvegicus)
Mammalia Tcf25 34
  • 86.83 (n)
mouse
(Mus musculus)
Mammalia Tcf25 34 16 35
  • 85.9 (n)
cow
(Bos Taurus)
Mammalia TCF25 34 35
  • 83.9 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia TCF25 35
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TCF25 35
  • 61 (a)
OneToOne
chicken
(Gallus gallus)
Aves TCF25 35 34
  • 68.38 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TCF25 35
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia tcf25 34
  • 63.65 (n)
Str.8047 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.23789 34
zebrafish
(Danio rerio)
Actinopterygii tcf25 34 35
  • 60.88 (n)
wufc09e07 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.5155 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005545 34
  • 55.33 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG7927 35 34
  • 49.63 (n)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea K07A12.1 35
  • 23 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes -- 35
  • 20 (a)
OneToOne
RQC1 37
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G46900 34
  • 44.47 (n)
rice
(Oryza sativa)
Liliopsida Os09g0514900 34
  • 43.99 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC1142.01 34
  • 38.84 (n)
Species where no ortholog for TCF25 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TCF25 Gene

ENSEMBL:
Gene Tree for TCF25 (if available)
TreeFam:
Gene Tree for TCF25 (if available)

Paralogs for TCF25 Gene

genes like me logo Genes that share paralogs with TCF25: view

No data available for Paralogs for TCF25 Gene

Variants for TCF25 Gene

Sequence variations from dbSNP and Humsavar for TCF25 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000002708 -- 89,906,280(+) CCTGC(C/T)CCCGG reference, missense
rs1000041954 -- 89,883,916(+) TGAAC(C/T)TTGAA intron-variant
rs1000059004 -- 89,901,034(+) GGGCC(C/T)GTGTT intron-variant
rs1000073767 -- 89,871,986(+) AGCCC(C/G)CAGTA upstream-variant-2KB
rs1000223486 -- 89,888,326(+) CTCAC(A/G)CCTGT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for TCF25 Gene

Variant ID Type Subtype PubMed ID
dgv5336n54 CNV gain 21841781
dgv5337n54 CNV gain+loss 21841781
dgv5338n54 CNV gain+loss 21841781
dgv5339n54 CNV loss 21841781
dgv5340n54 CNV gain 21841781
dgv5341n54 CNV gain+loss 21841781
esv1230447 CNV deletion 17803354
esv1404867 CNV deletion 17803354
esv1411513 CNV deletion 17803354
esv1528431 CNV deletion 17803354
esv24531 CNV gain 19812545
esv2665192 CNV deletion 23128226
esv2758671 CNV loss 17122850
esv2762221 CNV gain+loss 21179565
esv3553918 CNV deletion 23714750
esv5359 CNV loss 18987735
nsv1066499 CNV loss 25217958
nsv1071318 CNV deletion 25765185
nsv1118366 CNV deletion 24896259
nsv428331 CNV gain+loss 18775914
nsv457624 CNV loss 19166990
nsv482951 CNV loss 15286789
nsv509640 CNV insertion 20534489
nsv511563 CNV loss 21212237
nsv512457 CNV loss 21212237
nsv526347 CNV loss 19592680
nsv573744 CNV loss 21841781
nsv573799 CNV gain 21841781
nsv573810 CNV loss 21841781
nsv573811 CNV gain+loss 21841781
nsv573812 CNV gain 21841781
nsv573813 CNV gain 21841781
nsv573816 CNV loss 21841781
nsv573825 CNV gain 21841781
nsv573839 CNV loss 21841781
nsv9479 CNV gain 18304495
nsv9481 CNV loss 18304495

Variation tolerance for TCF25 Gene

Residual Variation Intolerance Score: 33.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.78; 66.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for TCF25 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCF25

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCF25 Gene

Disorders for TCF25 Gene

Relevant External Links for TCF25

Genetic Association Database (GAD)
TCF25
Human Genome Epidemiology (HuGE) Navigator
TCF25
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCF25

No disorders were found for TCF25 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCF25 Gene

Publications for TCF25 Gene

  1. hnulp1, a basic helix-loop-helix protein with a novel transcriptional repressive domain, inhibits transcriptional activity of serum response factor. (PMID: 16574069) Cai Z. … Wu X. (Biochem. Biophys. Res. Commun. 2006) 2 3 4 64
  2. Assessment of a polymorphism of SDK1 with hypertension in Japanese Individuals. (PMID: 19851296) Oguri M. … Yamada Y. (Am. J. Hypertens. 2010) 3 46 64
  3. Association of genetic variants with hemorrhagic stroke in Japanese individuals. (PMID: 20198315) Yoshida T. … Yamada Y. (Int. J. Mol. Med. 2010) 3 46 64
  4. Nuclear localized protein-1 (Nulp1) increases cell death of human osteosarcoma cells and binds the X-linked inhibitor of apoptosis protein. (PMID: 18068114) Steen H. … Lindholm D. (Biochem. Biophys. Res. Commun. 2008) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for TCF25 Gene

  • Addgene plasmids for TCF25

Sources for TCF25 Gene

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