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Aliases for TCF24 Gene

Aliases for TCF24 Gene

  • Transcription Factor 24 2 3
  • TCF-24 3 4
  • BHLHa25 3

External Ids for TCF24 Gene

Summaries for TCF24 Gene

GeneCards Summary for TCF24 Gene

TCF24 (Transcription Factor 24) is a Protein Coding gene. GO annotations related to this gene include protein dimerization activity. An important paralog of this gene is MSC.

UniProtKB/Swiss-Prot for TCF24 Gene

  • Putative transcription factor.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCF24 Gene

Genomics for TCF24 Gene

Genomic Location for TCF24 Gene

Start:
66,946,501 bp from pter
End:
66,962,590 bp from pter
Size:
16,090 bases
Orientation:
Minus strand

Genomic View for TCF24 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCF24 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCF24 Gene

No data available for Regulatory Elements for TCF24 Gene

Proteins for TCF24 Gene

  • Protein details for TCF24 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTU0-TCF24_HUMAN
    Recommended name:
    Transcription factor 24
    Protein Accession:
    Q7RTU0
    Secondary Accessions:
    • H3BPR9

    Protein attributes for TCF24 Gene

    Size:
    167 amino acids
    Molecular mass:
    17516 Da
    Quaternary structure:
    • Efficient DNA binding requires dimerization with another bHLH protein.
    SequenceCaution:
    • Sequence=DAA00306.1; Type=Erroneous gene model prediction; Evidence={ECO:0000305};

neXtProt entry for TCF24 Gene

Proteomics data for TCF24 Gene at MOPED

Post-translational modifications for TCF24 Gene

No Post-translational modifications

Other Protein References for TCF24 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TCF24 Gene

Domains for TCF24 Gene

Gene Families for TCF24 Gene

HGNC:
  • bHLH :Basic helix-loop-helix proteins

Protein Domains for TCF24 Gene

UniProtKB/Swiss-Prot:

TCF24_HUMAN
Domain:
  • Contains 1 bHLH (basic helix-loop-helix) domain.:
    • Q7RTU0
genes like me logo Genes that share domains with TCF24: view

Function for TCF24 Gene

Molecular function for TCF24 Gene

UniProtKB/Swiss-Prot Function: Putative transcription factor.

Gene Ontology (GO) - Molecular Function for TCF24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with TCF24: view

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TCF24 Gene

Localization for TCF24 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCF24 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCF24 Gene COMPARTMENTS Subcellular localization image for TCF24 gene
Compartment Confidence
nucleus 3

Gene Ontology (GO) - Cellular Components for TCF24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TCF24: view

Pathways for TCF24 Gene

SuperPathways for TCF24 Gene

No Data Available

Interacting Proteins for TCF24 Gene

Gene Ontology (GO) - Biological Process for TCF24 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with TCF24: view

No data available for Pathways by source for TCF24 Gene

Transcripts for TCF24 Gene

mRNA/cDNA for TCF24 Gene

(2) REFSEQ mRNAs :
(0) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TCF24 Gene

Transcription factor 24:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TCF24 Gene

No ASD Table

Relevant External Links for TCF24 Gene

GeneLoc Exon Structure for
TCF24
ECgene alternative splicing isoforms for
TCF24

Expression for TCF24 Gene

mRNA expression in normal human tissues for TCF24 Gene

mRNA differential expression in normal tissues according to GTEx for TCF24 Gene

This gene is overexpressed in Heart - Left Ventricle (12.6), Testis (9.3), and Heart - Atrial Appendage (5.5).

SOURCE GeneReport for Unigene cluster for TCF24 Gene Hs.120040

genes like me logo Genes that share expressions with TCF24: view

Orthologs for TCF24 Gene

This gene was present in the common ancestor of animals.

Orthologs for TCF24 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCF24 36
  • 99.6 (n)
  • 99.4 (a)
cow
(Bos Taurus)
Mammalia TCF24 36
  • 87.69 (n)
  • 89.23 (a)
dog
(Canis familiaris)
Mammalia TCF24 36
  • 84.83 (n)
  • 82.04 (a)
TCF24 37
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tcf24 36
  • 78.11 (n)
  • 78.92 (a)
Tcf24 16
Tcf24 37
  • 81 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TCF24 37
  • 80 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia TCF24 37
  • 64 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tcf24 36
  • 80.61 (n)
  • 79.39 (a)
lizard
(Anolis carolinensis)
Reptilia TCF24 37
  • 61 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii TCF24 37
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta HLH54F 37
  • 16 (a)
OneToMany
Species with no ortholog for TCF24:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for TCF24 Gene

ENSEMBL:
Gene Tree for TCF24 (if available)
TreeFam:
Gene Tree for TCF24 (if available)

Paralogs for TCF24 Gene

Paralogs for TCF24 Gene

Selected SIMAP similar genes for TCF24 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TCF24: view

Variants for TCF24 Gene

Sequence variations from dbSNP and Humsavar for TCF24 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs4737816 -- 66,957,324(+) aggca(A/G)aagaa intron-variant
rs4737817 -- 66,957,327(+) cagaa(A/G)aattg intron-variant
rs4737818 -- 66,957,467(+) ATGTa(A/G)aggcc intron-variant
rs6992540 -- 66,963,391(+) TTCAG(C/T)AACAT upstream-variant-2KB
rs7824706 -- 66,957,077(+) cacta(C/T)actct intron-variant

Relevant External Links for TCF24 Gene

HapMap Linkage Disequilibrium report
TCF24

No data available for Structural Variations from Database of Genomic Variants (DGV) for TCF24 Gene

Disorders for TCF24 Gene

No disorders were found for TCF24 Gene.

No data available for UniProtKB/Swiss-Prot for TCF24 Gene

Publications for TCF24 Gene

  1. Exhaustive identification of human class II basic helix-loop-helix proteins by virtual library screening. (PMID: 14516699) McLellan A.S. … Kealey T. (Mech. Dev. 2002) 2 3 4
  2. Biochemical and phosphoproteomic analysis of the helix-loop-helix protein E47. (PMID: 22354994) Teachenor R. … Murre C. (Mol. Cell. Biol. 2012) 3
  3. DNA sequence and analysis of human chromosome 8. (PMID: 16421571) Nusbaum C. … Lander E.S. (Nature 2006) 4

Products for TCF24 Gene

Sources for TCF24 Gene

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