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Aliases for TCF15 Gene

Aliases for TCF15 Gene

  • Transcription Factor 15 (Basic Helix-Loop-Helix) 2 3
  • Class A Basic Helix-Loop-Helix Protein 40 3 4
  • Protein BHLH-EC2 3 4
  • PARAXIS 3 4
  • BHLHa40 3 4
  • TCF-15 3 4
  • Basic Helix-Loop-Helix Transcription Factor 15 3
  • Transcription Factor 15 3
  • BHLHEC2 4
  • EC2 3

External Ids for TCF15 Gene

Previous GeneCards Identifiers for TCF15 Gene

  • GC20M000572
  • GC20M000579
  • GC20M000532
  • GC20M000584

Summaries for TCF15 Gene

Entrez Gene Summary for TCF15 Gene

  • The protein encoded by this gene is found in the nucleus and may be involved in the early transcriptional regulation of patterning of the mesoderm. The encoded basic helix-loop-helix protein requires dimerization with another basic helix-loop-helix protein for efficient DNA binding. [provided by RefSeq, Jul 2008]

GeneCards Summary for TCF15 Gene

TCF15 (Transcription Factor 15 (Basic Helix-Loop-Helix)) is a Protein Coding gene. Among its related pathways are ERK Signaling and ERK Signaling. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and protein dimerization activity. An important paralog of this gene is LYL1.

UniProtKB/Swiss-Prot for TCF15 Gene

  • May function as an early transcriptional regulator, involved in the patterning of the mesoderm and in lineage determination of cell types derived from the mesoderm

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCF15 Gene

Genomics for TCF15 Gene

Regulatory Elements for TCF15 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for TCF15 Gene

Start:
603,797 bp from pter
End:
610,398 bp from pter
Size:
6,602 bases
Orientation:
Minus strand

Genomic View for TCF15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCF15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCF15 Gene

Proteins for TCF15 Gene

  • Protein details for TCF15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12870-TCF15_HUMAN
    Recommended name:
    Transcription factor 15
    Protein Accession:
    Q12870
    Secondary Accessions:
    • Q9NQQ1

    Protein attributes for TCF15 Gene

    Size:
    199 amino acids
    Molecular mass:
    20816 Da
    Quaternary structure:
    • Efficient DNA binding requires dimerization with another bHLH protein.

neXtProt entry for TCF15 Gene

Proteomics data for TCF15 Gene at MOPED

Post-translational modifications for TCF15 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TCF15 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for TCF15 Gene

Domains for TCF15 Gene

Gene Families for TCF15 Gene

HGNC:
  • bHLH :Basic helix-loop-helix proteins

Protein Domains for TCF15 Gene

Suggested Antigen Peptide Sequences for TCF15 Gene

Graphical View of Domain Structure for InterPro Entry

Q12870

UniProtKB/Swiss-Prot:

TCF15_HUMAN :
  • Q12870
Domain:
  • Contains 1 bHLH (basic helix-loop-helix) domain.
genes like me logo Genes that share domains with TCF15: view

Function for TCF15 Gene

Molecular function for TCF15 Gene

GENATLAS Biochemistry: transcription factor 15,expressed in early mesoderma and developing somites in the mouse embryo
UniProtKB/Swiss-Prot Function: May function as an early transcriptional regulator, involved in the patterning of the mesoderm and in lineage determination of cell types derived from the mesoderm

Gene Ontology (GO) - Molecular Function for TCF15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0003700 sequence-specific DNA binding transcription factor activity TAS 8041747
GO:0046983 protein dimerization activity IEA --
genes like me logo Genes that share ontologies with TCF15: view
genes like me logo Genes that share phenotypes with TCF15: view

Animal Models for TCF15 Gene

MGI Knock Outs for TCF15:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for TCF15 Gene

Localization for TCF15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCF15 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCF15 Gene COMPARTMENTS Subcellular localization image for TCF15 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for TCF15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TCF15: view

Pathways for TCF15 Gene

genes like me logo Genes that share pathways with TCF15: view

Pathways by source for TCF15 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for TCF15 Gene

Gene Ontology (GO) - Biological Process for TCF15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001756 somitogenesis IEA --
GO:0003016 respiratory system process IEA --
GO:0006351 transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter TAS 8825648
GO:0007498 mesoderm development TAS 8041747
genes like me logo Genes that share ontologies with TCF15: view

Transcripts for TCF15 Gene

mRNA/cDNA for TCF15 Gene

(21) Selected AceView cDNA sequences:
(1) REFSEQ mRNAs :
(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TCF15 Gene

Transcription factor 15 (basic helix-loop-helix):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCF15

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCF15 Gene

No ASD Table

Relevant External Links for TCF15 Gene

GeneLoc Exon Structure for
TCF15
ECgene alternative splicing isoforms for
TCF15

Expression for TCF15 Gene

mRNA expression in normal human tissues for TCF15 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TCF15 Gene

This gene is overexpressed in Heart - Left Ventricle (12.3), Adipose - Visceral (Omentum) (4.7), and Heart - Atrial Appendage (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for TCF15 Gene

SOURCE GeneReport for Unigene cluster for TCF15 Gene Hs.437

genes like me logo Genes that share expressions with TCF15: view

In Situ Assay Products

No data available for mRNA Expression by UniProt/SwissProt for TCF15 Gene

Orthologs for TCF15 Gene

This gene was present in the common ancestor of animals.

Orthologs for TCF15 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia TCF15 35
  • 93.4 (n)
  • 93.4 (a)
TCF15 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia TCF15 35
  • 94.64 (n)
  • 94.47 (a)
TCF15 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tcf15 35
  • 90.6 (n)
  • 92.31 (a)
Tcf15 16
Tcf15 36
  • 95 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia TCF15 36
  • 74 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tcf15 35
  • 90.94 (n)
  • 92.82 (a)
chicken
(Gallus gallus)
Aves TCF15 35
  • 77.96 (n)
  • 76.5 (a)
TCF15 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TCF15 36
  • 81 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.15926 35
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101733229 35
  • 72.54 (n)
  • 72.96 (a)
Str.11266 35
zebrafish
(Danio rerio)
Actinopterygii par1 35
  • 65.17 (n)
  • 66.29 (a)
par1 36
  • 68 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG33557 36
  • 39 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea hlh-8 36
  • 25 (a)
OneToMany
Species with no ortholog for TCF15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TCF15 Gene

ENSEMBL:
Gene Tree for TCF15 (if available)
TreeFam:
Gene Tree for TCF15 (if available)

Paralogs for TCF15 Gene

Paralogs for TCF15 Gene

Selected SIMAP similar genes for TCF15 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with TCF15: view

Variants for TCF15 Gene

Sequence variations from dbSNP and Humsavar for TCF15 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type MAF
rs183989 -- 610,256(-) CACGG(A/C/G/T)GGGAC utr-variant-5-prime
rs188157 -- 610,079(+) ccccc(G/T)gggcc synonymous-codon, reference
rs282162 -- 606,311(-) ACTTA(A/C)AGAGT intron-variant
rs282163 -- 607,445(-) CTTTG(G/T)GGGCC intron-variant
rs282164 -- 609,812(-) TTCCG(A/C/G/T)GCCGC synonymous-codon, reference

Structural Variations from Database of Genomic Variants (DGV) for TCF15 Gene

Variant ID Type Subtype PubMed ID
nsv469833 CNV Gain 16826518
nsv833891 CNV Gain+Loss 17160897
nsv458844 CNV Loss 19166990
nsv912569 CNV Loss 21882294
nsv458845 CNV Loss 19166990
dgv4510n71 CNV Loss 21882294
dgv4511n71 CNV Loss 21882294
nsv912573 CNV Loss 21882294
nsv828661 CNV Gain 20364138

Relevant External Links for TCF15 Gene

HapMap Linkage Disequilibrium report
TCF15

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCF15 Gene

Disorders for TCF15 Gene

No disorders were found for TCF15 Gene.

No data available for UniProtKB/Swiss-Prot for TCF15 Gene

Publications for TCF15 Gene

  1. Genomic organization and chromosomal localization of the gene TCF15 encoding the early mesodermal basic helix-loop-helix factor bHLH-EC2. (PMID: 8825648) Hidai H. … Quertermous T. (Genomics 1995) 2 3 23
  2. Cloning and characterization of a basic helix-loop-helix protein expressed in early mesoderm and the developing somites. (PMID: 8041747) Quertermous E.E. … Quertermous T. (Proc. Natl. Acad. Sci. U.S.A. 1994) 2 3 4
  3. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Acetylation of KLF5 alters the assembly of p15 transcription factors in transforming growth factor-beta-mediated induction in epithelial cells. (PMID: 19419955) Guo P. … Dong J.T. (J. Biol. Chem. 2009) 3

Products for TCF15 Gene

Sources for TCF15 Gene

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