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Aliases for TCEANC Gene

Aliases for TCEANC Gene

  • Transcription Elongation Factor A (SII) N-Terminal And Central Domain Containing 2 3
  • TFIIS Central Domain-Containing Protein 1 4

External Ids for TCEANC Gene

Summaries for TCEANC Gene

GeneCards Summary for TCEANC Gene

TCEANC (Transcription Elongation Factor A (SII) N-Terminal And Central Domain Containing) is a Protein Coding gene. An important paralog of this gene is TCEA2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCEANC Gene

Genomics for TCEANC Gene

Genomic Location for TCEANC Gene

Start:
13,653,133 bp from pter
End:
13,681,964 bp from pter
Size:
28,832 bases
Orientation:
Plus strand

Genomic View for TCEANC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCEANC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCEANC Gene

Regulatory Elements for TCEANC Gene

Proteins for TCEANC Gene

  • Protein details for TCEANC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N8B7-TEANC_HUMAN
    Recommended name:
    Transcription elongation factor A N-terminal and central domain-containing protein
    Protein Accession:
    Q8N8B7
    Secondary Accessions:
    • A6NI06
    • B2RDM3

    Protein attributes for TCEANC Gene

    Size:
    351 amino acids
    Molecular mass:
    40245 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=BAC04930.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for TCEANC Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for TCEANC Gene

Proteomics data for TCEANC Gene at MOPED

Post-translational modifications for TCEANC Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TCEANC Gene

No data available for DME Specific Peptides for TCEANC Gene

Domains for TCEANC Gene

Protein Domains for TCEANC Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TEANC_HUMAN
Domain:
  • Contains 1 TFIIS central domain.:
    • Q8N8B7
  • Contains 1 TFIIS N-terminal domain.:
    • Q8N8B7
genes like me logo Genes that share domains with TCEANC: view

No data available for Gene Families for TCEANC Gene

Function for TCEANC Gene

Gene Ontology (GO) - Molecular Function for TCEANC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IEA --
GO:0005515 protein binding IPI 25416956
GO:0008270 zinc ion binding --
genes like me logo Genes that share ontologies with TCEANC: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TCEANC Gene

Localization for TCEANC Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCEANC Gene COMPARTMENTS Subcellular localization image for TCEANC gene
Compartment Confidence
mitochondrion 3
nucleus 3
peroxisome 2
cytosol 1

Gene Ontology (GO) - Cellular Components for TCEANC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TCEANC: view

Pathways for TCEANC Gene

SuperPathways for TCEANC Gene

No Data Available

Interacting Proteins for TCEANC Gene

Gene Ontology (GO) - Biological Process for TCEANC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006357 regulation of transcription from RNA polymerase II promoter IEA --
GO:0032784 regulation of DNA-templated transcription, elongation IEA --
genes like me logo Genes that share ontologies with TCEANC: view

No data available for Pathways by source for TCEANC Gene

Transcripts for TCEANC Gene

Unigene Clusters for TCEANC Gene

Transcription elongation factor A (SII) N-terminal and central domain containing:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TCEANC Gene

No ASD Table

Relevant External Links for TCEANC Gene

GeneLoc Exon Structure for
TCEANC
ECgene alternative splicing isoforms for
TCEANC

Expression for TCEANC Gene

mRNA expression in normal human tissues for TCEANC Gene

SOURCE GeneReport for Unigene cluster for TCEANC Gene Hs.222855

genes like me logo Genes that share expressions with TCEANC: view

Orthologs for TCEANC Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for TCEANC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCEANC 36
  • 99.39 (n)
  • 99.21 (a)
TCEANC 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia -- 37
  • 65 (a)
OneToMany
-- 37
  • 63 (a)
OneToMany
TCEANC 36
  • 75.58 (n)
  • 68.52 (a)
dog
(Canis familiaris)
Mammalia TCEANC 36
  • 84.3 (n)
  • 79.77 (a)
TCEANC 37
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Tceanc 36
  • 79.75 (n)
  • 69.91 (a)
Tceanc 16
Tceanc 37
  • 67 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Tceanc 36
  • 80.27 (n)
  • 70.98 (a)
chicken
(Gallus gallus)
Aves TCEANC 36
  • 62.74 (n)
  • 55.17 (a)
TCEANC 37
  • 52 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia TCEANC 37
  • 42 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.17490 36
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.12985 36
tceanc 36
  • 58.15 (n)
  • 53.23 (a)
zebrafish
(Danio rerio)
Actinopterygii LOC100150588 36
  • 52.99 (n)
  • 44.01 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG8117 37
  • 38 (a)
ManyToMany
TfIIS 37
  • 27 (a)
ManyToMany
worm
(Caenorhabditis elegans)
Secernentea T24H10.1 37
  • 24 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DST1 37
  • 19 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2769 37
  • 24 (a)
OneToMany
Species with no ortholog for TCEANC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for TCEANC Gene

ENSEMBL:
Gene Tree for TCEANC (if available)
TreeFam:
Gene Tree for TCEANC (if available)

Paralogs for TCEANC Gene

Paralogs for TCEANC Gene

Selected SIMAP similar genes for TCEANC Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with TCEANC: view

Variants for TCEANC Gene

Sequence variations from dbSNP and Humsavar for TCEANC Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs2361159 - 13,662,996(+) GAGAT(C/T)GAGTG reference, missense
rs2361160 -- 13,665,495(+) GAGGC(C/T)GAGGC intron-variant, downstream-variant-500B
rs3761625 -- 13,664,458(+) ACCCT(A/G)GAACT utr-variant-3-prime, downstream-variant-500B
rs3761626 -- 13,664,596(+) TCTAG(A/G)ATGTT utr-variant-3-prime
rs4830882 -- 13,656,115(+) TAGCT(A/G)TCCAG intron-variant

Relevant External Links for TCEANC Gene

HapMap Linkage Disequilibrium report
TCEANC

No data available for Structural Variations from Database of Genomic Variants (DGV) for TCEANC Gene

Disorders for TCEANC Gene

No disorders were found for TCEANC Gene.

No data available for UniProtKB/Swiss-Prot for TCEANC Gene

Publications for TCEANC Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  4. Towards a proteome-scale map of the human protein-protein interaction network. (PMID: 16189514) Rual J.F. … Vidal M. (Nature 2005) 3
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for TCEANC Gene

Sources for TCEANC Gene

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