Free for academic non-profit institutions. Other users need a Commercial license

Aliases for TCEAL9 Gene

Aliases for TCEAL9 Gene

  • Transcription Elongation Factor A Like 9 2 3 5
  • Transcription Elongation Factor S-II Protein-Like 9 3 4
  • WW Domain-Binding Protein 5 3 4
  • TCEA-Like Protein 9 3 4
  • Pp21 Homolog 2 3
  • WBP-5 3 4
  • WBP5 3 4
  • Transcription Elongation Factor A Protein-Like 9 3
  • WW Domain Binding Protein 5 2
  • WW Domain Binding Protein 1 3
  • WEX6 3

External Ids for TCEAL9 Gene

Previous HGNC Symbols for TCEAL9 Gene

  • WBP5

Summaries for TCEAL9 Gene

Entrez Gene Summary for TCEAL9 Gene

  • The globular WW domain is composed of 38 to 40 semiconserved amino acids shared by proteins of diverse functions including structural, regulatory, and signaling proteins. The domain is involved in mediating protein-protein interactions through the binding of polyproline ligands. This gene encodes a WW domain binding protein. This gene also encodes a domain with similarity to the transcription elongation factor A, SII-related family. Alternative splicing results in multiple transcript variants encoding a single isoform. [provided by RefSeq, Jul 2008]

GeneCards Summary for TCEAL9 Gene

TCEAL9 (Transcription Elongation Factor A Like 9) is a Protein Coding gene. An important paralog of this gene is TCEAL1.

UniProtKB/Swiss-Prot for TCEAL9 Gene

  • May be involved in transcriptional regulation.

Additional gene information for TCEAL9 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCEAL9 Gene

Genomics for TCEAL9 Gene

GeneHancer (GH) Regulatory Elements for TCEAL9 Gene

Promoters and enhancers for TCEAL9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI103355 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.3 345 2.4 HDAC1 PKNOX1 ATF1 ZSCAN4 ZNF133 ZNF76 DMAP1 YY1 ZNF335 ZNF366 TCEAL9 BEX4 BEX3
GH0XI102720 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 9.9 -635.7 -635651 1.2 HDAC1 CLOCK ATF1 TAF9B SIN3A YY1 ZEB1 ZNF335 RCOR1 FOS BHLHB9 GC0XM102718 MORF4L2-AS1 LINC00630 ARMCX5 ENSG00000239407 TCEAL3-AS1 TCEAL9 BEX4
GH0XI102658 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE 9.9 -697.0 -696953 2.6 CLOCK ATF1 FOXA2 ARID4B SIN3A YY1 FOS ATF7 MXD4 REST ENSG00000270050 GPRASP1 LINC00630 ARMCX5 ENSG00000239407 TCEAL3-AS1 TCEAL9 BHLHB9 ARMCX5-GPRASP2
GH0XI103396 Enhancer 1.2 FANTOM5 Ensembl ENCODE 12.5 +41.3 41338 3.5 MEIS2 LEF1 ETV1 JUN ZNF384 CEBPG FOSL1 ZFHX2 ZNF350 TRIM24 BEX4 TCEAL9 TCEAL4 ENSG00000281091 LL0XNC01-250H12.3 BEX3
GH0XI103464 Enhancer 0.9 Ensembl ENCODE 13.5 +108.1 108149 1.2 CTCF PKNOX1 ZNF654 REST RAD21 FOXK2 ARID2 GLIS1 ZNF143 SMC3 TCEAL9 BEX3 RAB40A PIR62779 PIR37216 LL0XNC01-250H12.3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around TCEAL9 on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCEAL9 Gene

Genomic Locations for TCEAL9 Gene
chrX:103,356,452-103,358,469
(GRCh38/hg38)
Size:
2,018 bases
Orientation:
Plus strand
chrX:102,611,373-102,613,397
(GRCh37/hg19)

Genomic View for TCEAL9 Gene

Genes around TCEAL9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCEAL9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCEAL9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCEAL9 Gene

Proteins for TCEAL9 Gene

  • Protein details for TCEAL9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9UHQ7-TCAL9_HUMAN
    Recommended name:
    Transcription elongation factor A protein-like 9
    Protein Accession:
    Q9UHQ7
    Secondary Accessions:
    • B2R5H6

    Protein attributes for TCEAL9 Gene

    Size:
    104 amino acids
    Molecular mass:
    12749 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TCEAL9 Gene

Post-translational modifications for TCEAL9 Gene

No Post-translational modifications

Other Protein References for TCEAL9 Gene

No data available for DME Specific Peptides for TCEAL9 Gene

Domains & Families for TCEAL9 Gene

Gene Families for TCEAL9 Gene

Protein Domains for TCEAL9 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for TCEAL9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9UHQ7

UniProtKB/Swiss-Prot:

TCAL9_HUMAN :
  • Belongs to the TFS-II family. TFA subfamily.
Family:
  • Belongs to the TFS-II family. TFA subfamily.
genes like me logo Genes that share domains with TCEAL9: view

Function for TCEAL9 Gene

Molecular function for TCEAL9 Gene

UniProtKB/Swiss-Prot Function:
May be involved in transcriptional regulation.

Gene Ontology (GO) - Molecular Function for TCEAL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0050699 WW domain binding IBA --
genes like me logo Genes that share ontologies with TCEAL9: view

Phenotypes for TCEAL9 Gene

genes like me logo Genes that share phenotypes with TCEAL9: view

Animal Models for TCEAL9 Gene

MGI Knock Outs for TCEAL9:

Animal Model Products

CRISPR Products

miRNA for TCEAL9 Gene

miRTarBase miRNAs that target TCEAL9

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for TCEAL9 Gene

Localization for TCEAL9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCEAL9 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for TCEAL9 gene
Compartment Confidence
nucleus 5
cytosol 3

Subcellular locations from the

Human Protein Atlas (HPA)
  • Cytosol (2)
  • Nucleoplasm (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for TCEAL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IBA --
genes like me logo Genes that share ontologies with TCEAL9: view

Pathways & Interactions for TCEAL9 Gene

SuperPathways for TCEAL9 Gene

No Data Available

Gene Ontology (GO) - Biological Process for TCEAL9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0006357 regulation of transcription by RNA polymerase II IBA --
genes like me logo Genes that share ontologies with TCEAL9: view

No data available for Pathways by source and SIGNOR curated interactions for TCEAL9 Gene

Drugs & Compounds for TCEAL9 Gene

No Compound Related Data Available

Transcripts for TCEAL9 Gene

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCEAL9 Gene

No ASD Table

Relevant External Links for TCEAL9 Gene

GeneLoc Exon Structure for
TCEAL9
ECgene alternative splicing isoforms for
TCEAL9

Expression for TCEAL9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

NURSA nuclear receptor signaling pathways regulating expression of TCEAL9 Gene:

TCEAL9

Evidence on tissue expression from TISSUES for TCEAL9 Gene

  • Adrenal gland(4.4)
  • Muscle(4.3)
  • Liver(2.2)
  • Pancreas(2.1)
  • Stomach(2.1)
  • Nervous system(2.1)
  • Heart(2)
  • Skin(2)
genes like me logo Genes that share expression patterns with TCEAL9: view

Primer Products

No data available for mRNA expression in normal human tissues , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCEAL9 Gene

Orthologs for TCEAL9 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TCEAL9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia WBP5 33 34
  • 100 (n)
cow
(Bos Taurus)
Mammalia WBP5 33 34
  • 89.87 (n)
dog
(Canis familiaris)
Mammalia WBP5 33 34
  • 89.74 (n)
rat
(Rattus norvegicus)
Mammalia Wbp5 33
  • 87.18 (n)
mouse
(Mus musculus)
Mammalia Wbp5 33 34
  • 83.33 (n)
Tceal9 16
Species where no ortholog for TCEAL9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TCEAL9 Gene

ENSEMBL:
Gene Tree for TCEAL9 (if available)
TreeFam:
Gene Tree for TCEAL9 (if available)

Paralogs for TCEAL9 Gene

Paralogs for TCEAL9 Gene

Pseudogenes.org Pseudogenes for TCEAL9 Gene

genes like me logo Genes that share paralogs with TCEAL9: view

Variants for TCEAL9 Gene

Sequence variations from dbSNP and Humsavar for TCEAL9 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000540790 -- 103,355,954(+) A/C upstream_transcript_variant
rs1001009911 -- 103,355,511(+) T/G upstream_transcript_variant
rs1001527220 -- 103,356,505(+) T/C 5_prime_UTR_variant
rs1001558591 -- 103,356,720(+) G/A intron_variant
rs1001910070 -- 103,354,907(+) T/C upstream_transcript_variant

Variation tolerance for TCEAL9 Gene

Residual Variation Intolerance Score: 42.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.37; 8.10% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for TCEAL9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCEAL9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for TCEAL9 Gene

Disorders for TCEAL9 Gene

No disorders were found for TCEAL9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCEAL9 Gene

Publications for TCEAL9 Gene

  1. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. (PMID: 16221301) Winter EE … Ponting CP (BMC evolutionary biology 2005) 2 3 58
  2. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PMID: 10931946) Hu RM … Chen JL (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 4 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for TCEAL9 Gene

Sources for TCEAL9 Gene

Content
Loading form....