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Aliases for TCEAL3 Gene

Aliases for TCEAL3 Gene

  • Transcription Elongation Factor A (SII)-Like 3 2 3
  • Transcription Elongation Factor S-II Protein-Like 3 3 4
  • TCEA-Like Protein 3 3 4
  • Transcription Elongation Factor A Protein-Like 3 3
  • WEX8 3

External Ids for TCEAL3 Gene

Summaries for TCEAL3 Gene

Entrez Gene Summary for TCEAL3 Gene

  • This gene encodes a member of the transcription elongation factor A (SII)-like (TCEAL) gene family. Members of this family contain TFA domains and may function as nuclear phosphoproteins that modulate transcription in a promoter context-dependent manner. Multiple family members are located on the X chromosome. Alternative splicing results in multiple transcript variants encoding a single isoform. [provided by RefSeq, Jul 2008]

GeneCards Summary for TCEAL3 Gene

TCEAL3 (Transcription Elongation Factor A (SII)-Like 3) is a Protein Coding gene. An important paralog of this gene is TCEAL6.

UniProtKB/Swiss-Prot for TCEAL3 Gene

  • May be involved in transcriptional regulation

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCEAL3 Gene

Genomics for TCEAL3 Gene

Genomic Location for TCEAL3 Gene

Start:
103,607,451 bp from pter
End:
103,629,690 bp from pter
Size:
22,240 bases
Orientation:
Plus strand

Genomic View for TCEAL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCEAL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCEAL3 Gene

Regulatory Elements for TCEAL3 Gene

Proteins for TCEAL3 Gene

  • Protein details for TCEAL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969E4-TCAL3_HUMAN
    Recommended name:
    Transcription elongation factor A protein-like 3
    Protein Accession:
    Q969E4
    Secondary Accessions:
    • D3DXA4

    Protein attributes for TCEAL3 Gene

    Size:
    200 amino acids
    Molecular mass:
    22502 Da
    Quaternary structure:
    No Data Available

neXtProt entry for TCEAL3 Gene

Proteomics data for TCEAL3 Gene at MOPED

Post-translational modifications for TCEAL3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for TCEAL3 Gene

No data available for DME Specific Peptides for TCEAL3 Gene

Domains for TCEAL3 Gene

Protein Domains for TCEAL3 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

TCAL3_HUMAN
Family:
  • Belongs to the TFS-II family. TFA subfamily.:
    • Q969E4
genes like me logo Genes that share domains with TCEAL3: view

No data available for Gene Families for TCEAL3 Gene

Function for TCEAL3 Gene

Molecular function for TCEAL3 Gene

UniProtKB/Swiss-Prot Function: May be involved in transcriptional regulation

Phenotypes for TCEAL3 Gene

GenomeRNAi human phenotypes for TCEAL3:
genes like me logo Genes that share phenotypes with TCEAL3: view

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for TCEAL3 Gene

Localization for TCEAL3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for TCEAL3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for TCEAL3 Gene COMPARTMENTS Subcellular localization image for TCEAL3 gene
Compartment Confidence
nucleus 4
cytosol 2

Gene Ontology (GO) - Cellular Components for TCEAL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
genes like me logo Genes that share ontologies with TCEAL3: view

Pathways for TCEAL3 Gene

SuperPathways for TCEAL3 Gene

No Data Available

Interacting Proteins for TCEAL3 Gene

Selected Interacting proteins: Q969E4-TCAL3_HUMAN for TCEAL3 Gene via I2D

Symbol External ID(s) Details
ETS1

Gene Ontology (GO) - Biological Process for TCEAL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IEA --
genes like me logo Genes that share ontologies with TCEAL3: view

No data available for Pathways by source for TCEAL3 Gene

Transcripts for TCEAL3 Gene

Unigene Clusters for TCEAL3 Gene

Transcription elongation factor A (SII)-like 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TCEAL3 Gene

ExUns: 1a · 1b · 1c · 1d · 1e ^ 2 ^ 3a · 3b · 3c · 3d
SP1: -
SP2:
SP3:
SP4: -

Relevant External Links for TCEAL3 Gene

GeneLoc Exon Structure for
TCEAL3
ECgene alternative splicing isoforms for
TCEAL3

Expression for TCEAL3 Gene

mRNA expression in normal human tissues for TCEAL3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for TCEAL3 Gene

SOURCE GeneReport for Unigene cluster for TCEAL3 Gene Hs.311776

genes like me logo Genes that share expressions with TCEAL3: view

Orthologs for TCEAL3 Gene

This gene was present in the common ancestor of mammals.

Orthologs for TCEAL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia TCEAL3 36
  • 99.67 (n)
  • 99 (a)
TCEAL3 37
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 37
  • 77 (a)
ManyToMany
-- 37
  • 83 (a)
ManyToMany
-- 37
  • 77 (a)
ManyToMany
-- 37
  • 85 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Tceal3 16
Tceal3 37
  • 73 (a)
ManyToMany
Tceal5 37
  • 69 (a)
ManyToMany
Tceal6 37
  • 74 (a)
ManyToMany
rat
(Rattus norvegicus)
Mammalia Tceal6 36
  • 79.29 (n)
  • 69.7 (a)
Species with no ortholog for TCEAL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TCEAL3 Gene

ENSEMBL:
Gene Tree for TCEAL3 (if available)
TreeFam:
Gene Tree for TCEAL3 (if available)

Paralogs for TCEAL3 Gene

Paralogs for TCEAL3 Gene

Selected SIMAP similar genes for TCEAL3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with TCEAL3: view

Variants for TCEAL3 Gene

Sequence variations from dbSNP and Humsavar for TCEAL3 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs221939 -- 103,608,180(-) CTCCG(A/C)CCGCT intron-variant
rs221940 -- 103,609,649(+) TTACA(C/T)GATAT reference, synonymous-codon
rs3813783 -- 103,605,978(-) TCTGA(A/C)TTTTG upstream-variant-2KB
rs7892745 -- 103,607,201(+) AAAGA(C/T)ATTTA upstream-variant-2KB
rs12009847 - 103,609,323(+) CCTCC(C/G)AGGCA reference, missense

Relevant External Links for TCEAL3 Gene

HapMap Linkage Disequilibrium report
TCEAL3

No data available for Structural Variations from Database of Genomic Variants (DGV) for TCEAL3 Gene

Disorders for TCEAL3 Gene

No disorders were found for TCEAL3 Gene.

No data available for UniProtKB/Swiss-Prot for TCEAL3 Gene

Publications for TCEAL3 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 3 4
  4. Mammalian BEX, WEX and GASP genes: coding and non-coding chimaerism sustained by gene conversion events. (PMID: 16221301) Winter E.E. … Ponting C.P. (BMC Evol. Biol. 2005) 2 3
  5. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4

Products for TCEAL3 Gene

Sources for TCEAL3 Gene

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