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Aliases for TCAM1P Gene

Aliases for TCAM1P Gene

  • Testicular Cell Adhesion Molecule 1, Pseudogene 2 3 5
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse), Pseudogene 2
  • Testicular Cell Adhesion Molecule 1 Homolog, Pseudogene 3
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse) 2
  • TCAM1 3

External Ids for TCAM1P Gene

Previous HGNC Symbols for TCAM1P Gene

  • TCAM1

Previous GeneCards Identifiers for TCAM1P Gene

  • GC17P061927

Summaries for TCAM1P Gene

Entrez Gene Summary for TCAM1P Gene

  • This pseudogene is located downstream from the growth hormone locus on chromosome 17. This locus evolved by a series of partial duplications that have disrupted the human gene. A homologous gene in mouse encodes a testis-specific cell adhesion protein that may play a role in germ cell-Sertoli cell interactions. [provided by RefSeq, Apr 2012]

GeneCards Summary for TCAM1P Gene

TCAM1P (Testicular Cell Adhesion Molecule 1, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAM1P Gene

Genomics for TCAM1P Gene

Regulatory Elements for TCAM1P Gene

Promoters for TCAM1P Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around TCAM1P on UCSC Golden Path with GeneCards custom track

Genomic Location for TCAM1P Gene

Chromosome:
17
Start:
63,849,292 bp from pter
End:
63,864,379 bp from pter
Size:
15,088 bases
Orientation:
Plus strand

Genomic View for TCAM1P Gene

Genes around TCAM1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAM1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAM1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAM1P Gene

Proteins for TCAM1P Gene

Post-translational modifications for TCAM1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAM1P Gene

Domains & Families for TCAM1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAM1P Gene

Function for TCAM1P Gene

miRNA for TCAM1P Gene

miRTarBase miRNAs that target TCAM1P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TCAM1P Gene

Localization for TCAM1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TCAM1P Gene

Pathways & Interactions for TCAM1P Gene

SuperPathways for TCAM1P Gene

No Data Available

Interacting Proteins for TCAM1P Gene

Gene Ontology (GO) - Biological Process for TCAM1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCAM1P Gene

Drugs & Compounds for TCAM1P Gene

No Compound Related Data Available

Transcripts for TCAM1P Gene

mRNA/cDNA for TCAM1P Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TCAM1P Gene

Testicular cell adhesion molecule 1, pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for TCAM1P Gene

No ASD Table

Relevant External Links for TCAM1P Gene

GeneLoc Exon Structure for
TCAM1P
ECgene alternative splicing isoforms for
TCAM1P

Expression for TCAM1P Gene

mRNA expression in normal human tissues for TCAM1P Gene

mRNA differential expression in normal tissues according to GTEx for TCAM1P Gene

This gene is overexpressed in Testis (x39.7).

SOURCE GeneReport for Unigene cluster for TCAM1P Gene Hs.629177

genes like me logo Genes that share expression patterns with TCAM1P: view

Primer Products

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for TCAM1P Gene

Orthologs for TCAM1P Gene

Evolution for TCAM1P Gene

ENSEMBL:
Gene Tree for TCAM1P (if available)
TreeFam:
Gene Tree for TCAM1P (if available)

No data available for Orthologs for TCAM1P Gene

Paralogs for TCAM1P Gene

No data available for Paralogs for TCAM1P Gene

Variants for TCAM1P Gene

Sequence variations from dbSNP and Humsavar for TCAM1P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs2236736 -- 63,860,888(-) GGCCT(A/C)GCAGG nc-transcript-variant
rs2236737 -- 63,860,740(-) ATGTC(A/G)GTCCC nc-transcript-variant
rs2320116 -- 63,863,396(+) atccg(C/G)ccacc nc-transcript-variant
rs2320117 -- 63,863,415(+) ccaaa(A/G)tgctg nc-transcript-variant
rs2665837 -- 63,855,506(-) TAGGC(A/G)TGAGC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TCAM1P Gene

Variant ID Type Subtype PubMed ID
nsv833510 CNV Loss 17160897
nsv510720 CNV Loss 20534489
nsv517272 CNV Gain+Loss 19592680
esv2716098 CNV Deletion 23290073

Relevant External Links for TCAM1P Gene

HapMap Linkage Disequilibrium report
TCAM1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCAM1P Gene

Disorders for TCAM1P Gene

Relevant External Links for TCAM1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCAM1P

No disorders were found for TCAM1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCAM1P Gene

Publications for TCAM1P Gene

  1. Testicular cell adhesion molecule 1 (TCAM1) is not essential for fertility. (PMID: 19766163) Nalam R.L. … Matzuk M.M. (Mol. Cell. Endocrinol. 2010) 2 3 67
  2. Structure, expression, and conserved physical linkage of mouse testicular cell adhesion molecule-1 (TCAM-1) gene. (PMID: 11195349) Sakatani S. … Ono M. (Genome 2000) 2 3
  3. The human growth hormone locus: nucleotide sequence, biology, and evolution. (PMID: 2744760) Chen E.Y. … Seeburg P.H. (Genomics 1989) 2 3
  4. Characterization of the human TCAM1P pseudogene and its activation by a potential dual promoter-enhancer: comparison with a protein-coding mouse orthologue. (PMID: 25622893) Kurihara M. … Kimura A.P. (FEBS Lett. 2015) 3
  5. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3

Products for TCAM1P Gene

Sources for TCAM1P Gene

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