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Aliases for TCAM1P Gene

Aliases for TCAM1P Gene

  • Testicular Cell Adhesion Molecule 1, Pseudogene 2 3 5
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse), Pseudogene 2
  • Testicular Cell Adhesion Molecule 1 Homolog, Pseudogene 3
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse) 2
  • TCAM1 3

External Ids for TCAM1P Gene

Previous HGNC Symbols for TCAM1P Gene

  • TCAM1

Previous GeneCards Identifiers for TCAM1P Gene

  • GC17P061927

Summaries for TCAM1P Gene

Entrez Gene Summary for TCAM1P Gene

  • This pseudogene is located downstream from the growth hormone locus on chromosome 17. This locus evolved by a series of partial duplications that have disrupted the human gene. A homologous gene in mouse encodes a testis-specific cell adhesion protein that may play a role in germ cell-Sertoli cell interactions. [provided by RefSeq, Apr 2012]

GeneCards Summary for TCAM1P Gene

TCAM1P (Testicular Cell Adhesion Molecule 1, Pseudogene) is a Pseudogene.

Additional gene information for TCAM1P Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAM1P Gene

Genomics for TCAM1P Gene

Regulatory Elements for TCAM1P Gene

Enhancers for TCAM1P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17H063600 1.2 ENCODE 9.9 -248.0 -248016 2.5 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 SP3 NFYC ZC3H11A FTSJ3 DDX42 POLG2 CEP95 DDX5 DCAF7 MAP3K3 CSH2 ENSG00000263501 ENSG00000259333
GH17H063694 1.2 ENCODE dbSUPER 6.1 -150.0 -150021 10.2 HDGF PKNOX1 ARID4B ZBTB7B GLIS2 ZNF143 ZNF207 ATF7 RUNX3 PAF1 FTSJ3 CSH2 STRADA ENSG00000125695 PSMC5 TCAM1P GC17M063698 GC17M063699 PIR54058
GH17H063355 1 Ensembl ENCODE 4.5 -491.7 -491699 3.5 ZBTB21 JUN ZSCAN4 FEZF1 ZIC2 ZFHX2 ZNF316 ZNF366 POLR2A FOS TCAM1P LOC105371857 GC17P063380
GH17H063397 0.8 Ensembl ENCODE 5.6 -450.2 -450163 3.2 POLR2A CREB1 MLLT1 RCOR1 BMI1 TCAM1P ENSG00000271749 ENSG00000226797
GH17H064325 0.6 ENCODE dbSUPER 4.2 +473.9 473884 0.2 NRF1 TCAM1P GC17M064322 RPL31P57
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around TCAM1P on UCSC Golden Path with GeneCards custom track

Genomic Locations for TCAM1P Gene

Genomic Locations for TCAM1P Gene
chr17:63,849,292-63,864,379
(GRCh38/hg38)
Size:
15,088 bases
Orientation:
Plus strand
chr17:61,926,652-61,941,739
(GRCh37/hg19)

Genomic View for TCAM1P Gene

Genes around TCAM1P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAM1P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAM1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAM1P Gene

Proteins for TCAM1P Gene

Post-translational modifications for TCAM1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAM1P Gene

Domains & Families for TCAM1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAM1P Gene

Function for TCAM1P Gene

Phenotypes From GWAS Catalog for TCAM1P Gene

Animal Model Products

miRNA for TCAM1P Gene

miRTarBase miRNAs that target TCAM1P

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for TCAM1P Gene

Localization for TCAM1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for TCAM1P Gene

Pathways & Interactions for TCAM1P Gene

SuperPathways for TCAM1P Gene

No Data Available

Interacting Proteins for TCAM1P Gene

Gene Ontology (GO) - Biological Process for TCAM1P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCAM1P Gene

Drugs & Compounds for TCAM1P Gene

No Compound Related Data Available

Transcripts for TCAM1P Gene

mRNA/cDNA for TCAM1P Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TCAM1P Gene

Testicular cell adhesion molecule 1, pseudogene:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCAM1P Gene

No ASD Table

Relevant External Links for TCAM1P Gene

GeneLoc Exon Structure for
TCAM1P
ECgene alternative splicing isoforms for
TCAM1P

Expression for TCAM1P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for TCAM1P Gene

mRNA differential expression in normal tissues according to GTEx for TCAM1P Gene

This gene is overexpressed in Testis (x39.7).

NURSA nuclear receptor signaling pathways regulating expression of TCAM1P Gene:

TCAM1P

SOURCE GeneReport for Unigene cluster for TCAM1P Gene:

Hs.629177
genes like me logo Genes that share expression patterns with TCAM1P: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for TCAM1P Gene

Orthologs for TCAM1P Gene

Evolution for TCAM1P Gene

ENSEMBL:
Gene Tree for TCAM1P (if available)
TreeFam:
Gene Tree for TCAM1P (if available)

No data available for Orthologs for TCAM1P Gene

Paralogs for TCAM1P Gene

No data available for Paralogs for TCAM1P Gene

Variants for TCAM1P Gene

Sequence variations from dbSNP and Humsavar for TCAM1P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000251106 -- 63,857,102(+) CAAAG(C/T)GCTGG nc-transcript-variant
rs1000939449 -- 63,858,215(+) ATTAG(C/G)CAGGC intron-variant
rs1001147227 -- 63,860,208(+) CACAG(A/G)GTAAC nc-transcript-variant
rs1001753606 -- 63,863,830(+) GAGCT(C/T)GTTGA nc-transcript-variant
rs1001809560 -- 63,856,555(+) CTGGC(A/T)AATTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TCAM1P Gene

Variant ID Type Subtype PubMed ID
nsv960135 CNV duplication 23825009
nsv954553 CNV deletion 24416366
nsv833510 CNV loss 17160897
nsv517272 CNV gain+loss 19592680
nsv510720 CNV deletion 20534489
esv3582856 CNV loss 25503493
esv3573787 CNV gain 25503493
esv2716098 CNV deletion 23290073

Relevant External Links for TCAM1P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCAM1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCAM1P Gene

Disorders for TCAM1P Gene

Relevant External Links for TCAM1P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCAM1P

No disorders were found for TCAM1P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCAM1P Gene

Publications for TCAM1P Gene

  1. Testicular cell adhesion molecule 1 (TCAM1) is not essential for fertility. (PMID: 19766163) Nalam RL … Matzuk MM (Molecular and cellular endocrinology 2010) 2 3 60
  2. Structure, expression, and conserved physical linkage of mouse testicular cell adhesion molecule-1 (TCAM-1) gene. (PMID: 11195349) Sakatani S … Ono M (Genome 2000) 2 3 60
  3. The human growth hormone locus: nucleotide sequence, biology, and evolution. (PMID: 2744760) Chen EY … Seeburg PH (Genomics 1989) 2 3 60
  4. Characterization of the human TCAM1P pseudogene and its activation by a potential dual promoter-enhancer: comparison with a protein-coding mouse orthologue. (PMID: 25622893) Kurihara M … Kimura AP (FEBS letters 2015) 3 60
  5. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang ZD … Gerstein M (Genome biology 2010) 3 60

Products for TCAM1P Gene

Sources for TCAM1P Gene

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