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Aliases for TCAM1P Gene

Aliases for TCAM1P Gene

  • Testicular Cell Adhesion Molecule 1, Pseudogene 2 3
  • TCAM1 3 6
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse), Pseudogene 2
  • Testicular Cell Adhesion Molecule 1 Homolog, Pseudogene 3
  • Testicular Cell Adhesion Molecule 1 Homolog (Mouse) 2

External Ids for TCAM1P Gene

Previous HGNC Symbols for TCAM1P Gene

  • TCAM1

Previous GeneCards Identifiers for TCAM1P Gene

  • GC17P061927

Summaries for TCAM1P Gene

Entrez Gene Summary for TCAM1P Gene

  • This pseudogene is located downstream from the growth hormone locus on chromosome 17. This locus evolved by a series of partial duplications that have disrupted the human gene. A homologous gene in mouse encodes a testis-specific cell adhesion protein that may play a role in germ cell-Sertoli cell interactions. [provided by RefSeq, Apr 2012]

GeneCards Summary for TCAM1P Gene

TCAM1P (Testicular Cell Adhesion Molecule 1, Pseudogene) is a Pseudogene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAM1P Gene

Genomics for TCAM1P Gene

Genomic Location for TCAM1P Gene

Start:
63,849,292 bp from pter
End:
63,864,379 bp from pter
Size:
15,088 bases
Orientation:
Plus strand

Genomic View for TCAM1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for TCAM1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAM1P Gene

No data available for Regulatory Elements for TCAM1P Gene

Proteins for TCAM1P Gene

Post-translational modifications for TCAM1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAM1P Gene

Domains for TCAM1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAM1P Gene

Function for TCAM1P Gene

miRNA for TCAM1P Gene

miRTarBase miRNAs that target TCAM1P

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for TCAM1P Gene

Localization for TCAM1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TCAM1P Gene

Pathways for TCAM1P Gene

SuperPathways for TCAM1P Gene

No Data Available

Interacting Proteins for TCAM1P Gene

Gene Ontology (GO) - Biological Process for TCAM1P Gene

None

No data available for Pathways by source for TCAM1P Gene

Transcripts for TCAM1P Gene

mRNA/cDNA for TCAM1P Gene

(2) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for TCAM1P Gene

Testicular cell adhesion molecule 1, pseudogene:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for TCAM1P

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for TCAM1P
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for TCAM1P Gene

No ASD Table

Relevant External Links for TCAM1P Gene

GeneLoc Exon Structure for
TCAM1P
ECgene alternative splicing isoforms for
TCAM1P

Expression for TCAM1P Gene

mRNA expression in normal human tissues for TCAM1P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for TCAM1P Gene

This gene is overexpressed in Testis (39.7).

SOURCE GeneReport for Unigene cluster for TCAM1P Gene Hs.629177

genes like me logo Genes that share expressions with TCAM1P: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for TCAM1P Gene

Orthologs for TCAM1P Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for TCAM1P Gene

Organism Taxonomy Gene Similarity Type Details
mouse
(Mus musculus)
Mammalia Tcam1 16
Species with no ortholog for TCAM1P:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for TCAM1P Gene

ENSEMBL:
Gene Tree for TCAM1P (if available)
TreeFam:
Gene Tree for TCAM1P (if available)

Paralogs for TCAM1P Gene

No data available for Paralogs for TCAM1P Gene

Variants for TCAM1P Gene

Sequence variations from dbSNP and Humsavar for TCAM1P Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs2156903 -- 63,859,819(-) TCACA(C/T)ATCAT intron-variant
rs2236736 -- 63,860,888(-) GGCCT(A/C)GCAGG nc-transcript-variant
rs2236737 -- 63,860,740(-) ATGTC(A/G)GTCCC nc-transcript-variant
rs2584597 -- 63,863,924(-) GGCCC(A/G)AAGTG nc-transcript-variant
rs2584598 -- 63,863,883(-) GACCC(A/G)CAACA nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for TCAM1P Gene

Variant ID Type Subtype PubMed ID
nsv833510 CNV Loss 17160897
nsv510720 CNV Loss 20534489
nsv517272 CNV Gain+Loss 19592680
esv2716098 CNV Deletion 23290073

Relevant External Links for TCAM1P Gene

HapMap Linkage Disequilibrium report
TCAM1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for TCAM1P Gene

Disorders for TCAM1P Gene

No disorders were found for TCAM1P Gene.

No data available for UniProtKB/Swiss-Prot for TCAM1P Gene

Publications for TCAM1P Gene

  1. Structure, expression, and conserved physical linkage of mouse testicular cell adhesion molecule-1 (TCAM-1) gene. (PMID: 11195349) Sakatani S. … Ono M. (Genome 2000) 2 3
  2. Testicular cell adhesion molecule 1 (TCAM1) is not essential for fertility. (PMID: 19766163) Nalam R.L. … Matzuk M.M. (Mol. Cell. Endocrinol. 2010) 2 3
  3. The human growth hormone locus: nucleotide sequence, biology, and evolution. (PMID: 2744760) Chen E.Y. … Seeburg P.H. (Genomics 1989) 2 3
  4. Gene structure of rat testicular cell adhesion molecule 1 (TCAM-1), and its physical linkage to genes coding for the growth hormone and BAF60b, a component of SWI/SNF complexes. (PMID: 9889334) Ono M. … Nakazato S. (Gene 1999) 3
  5. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. (PMID: 20210993) Zhang Z.D. … Gerstein M. (Genome Biol. 2010) 3

Products for TCAM1P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate TCAM1P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for TCAM1P
    • Block miRNA regulation of TCAM1P using miScript Target Protectors

    Sources for TCAM1P Gene

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