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Aliases for TCAF2P1 Gene

Aliases for TCAF2P1 Gene

  • TRPM8 Channel Associated Factor 2 Pseudogene 1 2 3 5
  • Family With Sequence Similarity 115, Member D (Pseudogene) 2 3
  • Family With Sequence Similarity 139, Member B 2 3
  • TRPM8 Channel-Associated Factor 2 Pseudogene 1 2
  • FAM115D 3
  • FAM139B 3

External Ids for TCAF2P1 Gene

Previous HGNC Symbols for TCAF2P1 Gene

  • FAM139B
  • FAM115D

Summaries for TCAF2P1 Gene

GeneCards Summary for TCAF2P1 Gene

TCAF2P1 (TRPM8 Channel Associated Factor 2 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for TCAF2P1 Gene

Genomics for TCAF2P1 Gene

Regulatory Elements for TCAF2P1 Gene

Enhancers for TCAF2P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07F143262 0.2 ENCODE 10.3 -536.6 -536620 2.8 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 LOC154761 GSTK1 TCAF2P1 TMEM139
GH07F143806 0.2 Ensembl 0.4 +6.4 6416 1.4 HDGF ATF1 PKNOX1 ARNT CREB3L1 SIN3A ZNF766 GATA2 KLF13 JUNB TCAF2P1 ENSG00000283528
GH07F143820 0.9 Ensembl 0.3 +20.9 20869 1.6 GLIS1 FEZF1 ZIC2 ENSG00000283528 TCAF2P1
GH07F143823 0.5 Ensembl 0.3 +23.7 23669 1.2 TCAF2 ENSG00000283528 TCAF2P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around TCAF2P1 on UCSC Golden Path with GeneCards custom track

Genomic Location for TCAF2P1 Gene

Chromosome:
7
Start:
143,800,732 bp from pter
End:
143,817,973 bp from pter
Size:
17,242 bases
Orientation:
Plus strand

Genomic View for TCAF2P1 Gene

Genes around TCAF2P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
TCAF2P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for TCAF2P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for TCAF2P1 Gene

Proteins for TCAF2P1 Gene

Post-translational modifications for TCAF2P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for TCAF2P1 Gene

Domains & Families for TCAF2P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for TCAF2P1 Gene

Function for TCAF2P1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for TCAF2P1 Gene

Localization for TCAF2P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for TCAF2P1 Gene

Pathways & Interactions for TCAF2P1 Gene

SuperPathways for TCAF2P1 Gene

No Data Available

Interacting Proteins for TCAF2P1 Gene

Gene Ontology (GO) - Biological Process for TCAF2P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for TCAF2P1 Gene

Transcripts for TCAF2P1 Gene

mRNA/cDNA for TCAF2P1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for TCAF2P1 Gene

No ASD Table

Relevant External Links for TCAF2P1 Gene

GeneLoc Exon Structure for
TCAF2P1
ECgene alternative splicing isoforms for
TCAF2P1

Expression for TCAF2P1 Gene

mRNA expression in normal human tissues for TCAF2P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of TCAF2P1 Gene:

TCAF2P1
genes like me logo Genes that share expression patterns with TCAF2P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for TCAF2P1 Gene

Orthologs for TCAF2P1 Gene

Evolution for TCAF2P1 Gene

ENSEMBL:
Gene Tree for TCAF2P1 (if available)
TreeFam:
Gene Tree for TCAF2P1 (if available)

No data available for Orthologs for TCAF2P1 Gene

Paralogs for TCAF2P1 Gene

No data available for Paralogs for TCAF2P1 Gene

Variants for TCAF2P1 Gene

Sequence variations from dbSNP and Humsavar for TCAF2P1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs111378458 -- 143,808,613(+) ATGAC(A/C)TAAAA upstream-variant-2KB
rs111521955 -- 143,811,094(+) TTTTT(-/T)GAGAC intron-variant
rs111757575 -- 143,812,109(+) ATTGA(C/T)AGAAA intron-variant, nc-transcript-variant
rs112215935 -- 143,810,062(+) ACAGG(C/G)AGAGT nc-transcript-variant
rs112222769 -- 143,809,723(+) GAAAG(-/A)AAAGA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for TCAF2P1 Gene

Variant ID Type Subtype PubMed ID
dgv12n29 CNV gain+loss 16826518
dgv249n111 CNV duplication 26073780
dgv250n111 CNV duplication 26073780
dgv251n111 CNV duplication 26073780
dgv252n111 CNV duplication 26073780
dgv6699n100 CNV gain 25217958
dgv6700n100 CNV gain 25217958
dgv6701n100 CNV gain 25217958
dgv6702n100 CNV gain 25217958
dgv6703n100 CNV loss 25217958
dgv6704n100 CNV loss 25217958
dgv6705n100 CNV gain+loss 25217958
dgv6706n100 CNV loss 25217958
dgv6707n100 CNV loss 25217958
dgv6709n100 CNV loss 25217958
dgv6710n100 CNV loss 25217958
dgv6711n100 CNV gain 25217958
dgv6712n100 CNV loss 25217958
dgv6714n100 CNV gain+loss 25217958
dgv6715n100 CNV gain+loss 25217958
dgv6716n100 CNV gain 25217958
dgv6717n100 CNV gain+loss 25217958
dgv6718n100 CNV gain 25217958
dgv6719n100 CNV loss 25217958
dgv6720n100 CNV gain+loss 25217958
dgv6721n100 CNV gain+loss 25217958
dgv6722n100 CNV loss 25217958
dgv6723n100 CNV loss 25217958
esv2422489 CNV duplication 17116639
esv2759570 CNV gain+loss 17122850
esv2761113 CNV gain+loss 21179565
esv2761375 CNV gain 21179565
esv29816 CNV gain+loss 19812545
esv3584556 CNV gain 24956385
esv3891220 CNV loss 25118596
esv3891221 CNV loss 25118596
nsv1016831 CNV gain 25217958
nsv1020659 CNV gain+loss 25217958
nsv1022459 CNV gain 25217958
nsv1023621 CNV loss 25217958
nsv1024360 CNV gain+loss 25217958
nsv1027488 CNV gain 25217958
nsv1027829 CNV gain+loss 25217958
nsv1028513 CNV gain+loss 25217958
nsv1029557 CNV gain+loss 25217958
nsv1033465 CNV gain 25217958
nsv1034865 CNV gain 25217958
nsv1076960 CNV deletion 25765185
nsv1140255 OTHER inversion 24896259
nsv1145165 CNV deletion 24896259
nsv1145166 CNV deletion 24896259
nsv1150104 CNV duplication 26484159
nsv1153668 CNV duplication 26484159
nsv1161631 CNV duplication 26073780
nsv1161656 CNV duplication 26073780
nsv16 OTHER inversion 15895083
nsv17 OTHER inversion 15895083
nsv428188 CNV gain+loss 18775914
nsv442210 CNV gain 18776908
nsv469570 CNV gain+loss 16826518
nsv471645 CNV gain+loss 15918152
nsv514455 CNV gain+loss 21397061
nsv522225 CNV gain 19592680
nsv608682 CNV gain 21841781
nsv608683 CNV loss 21841781
nsv608684 CNV loss 21841781
nsv608689 CNV loss 21841781
nsv608690 CNV loss 21841781
nsv7408 OTHER inversion 18451855
nsv8227 CNV gain+loss 18304495
nsv824357 CNV loss 20364138
nsv824358 CNV gain 20364138
nsv949973 CNV deletion 24416366
nsv971554 CNV duplication 23825009

Relevant External Links for TCAF2P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
TCAF2P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for TCAF2P1 Gene

Disorders for TCAF2P1 Gene

Relevant External Links for TCAF2P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
TCAF2P1

No disorders were found for TCAF2P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for TCAF2P1 Gene

Publications for TCAF2P1 Gene

  1. Toward a complete human genome sequence. (PMID: 9847074) Sulston J.E. … Waterston R. (Genome Res. 1998) 3 64

Products for TCAF2P1 Gene

Sources for TCAF2P1 Gene

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